EWM22432.1, cds8206 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22432.1
Unique Name	cds8206
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:137683..137983 -
Alignment location	KK037248.1:136594..137597 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22432.1
Product	WD40-repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100011g42.3432.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:137683..137983 -
KK037248.1	supercontig	KK037248.1:136594..137597 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017986	WD40_repeat_dom
IPR001810	F-box_dom
IPR015943	WD40/YVTN_repeat-like_dom
IPR001680	WD40_repeat

Homology

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BLAST of EWM22432.1 vs. NCBI_GenBank
Match: gi|585102938|gb|EWM22432.1| (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 888.641 bits (2295), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0

Query:    1 MERALHSQDVVKAVLSYLDHYTLLRRGARVSRGWQRVIEAGGLGEEACRLAFWSHYRSQDECYPNDFATISTSSFSWRKECKSRRLNGWSPREDIVGPSTVCDITGDVIFAVAATPVDSLFICGGENGILYFIDITEEVGKAIRYHFEAHTGTLLALSARKSCPGRDGVSMYHVISGDTLGCIQINAVDVVHRTRHILYTLRLKTSVLHFVRLRRDMQASALRDGTVFCWRDYSGSQEKSGEGHGSGEANATHAHNGEVTHFTGIGEENRVRLLVTASNSDQNLRTWRTAFGKDPGNSVRVELEPMQVLSLASLSVGSLCTSSGMSVAPDGVVTLGFGNGRVCSLDAYTCSLISVLHVHDDEVWDVRSCGSGMVVTSSRDRSVAVSDIRSADPSDHFRLAVGNWIVRVKATPACLLLLGFDAQLRVVRKRSLKM 434
            MERALHSQDVVKAVLSYLDHYTLLRRGARVSRGWQRVIEAGGLGEEACRLAFWSHYRSQDECYPNDFATISTSSFSWRKECKSRRLNGWSPREDIVGPSTVCDITGDVIFAVAATPVDSLFICGGENGILYFIDITEEVGKAIRYHFEAHTGTLLALSARKSCPGRDGVSMYHVISGDTLGCIQINAVDVVHRTRHILYTLRLKTSVLHFVRLRRDMQASALRDGTVFCWRDYSGSQEKSGEGHGSGEANATHAHNGEVTHFTGIGEENRVRLLVTASNSDQNLRTWRTAFGKDPGNSVRVELEPMQVLSLASLSVGSLCTSSGMSVAPDGVVTLGFGNGRVCSLDAYTCSLISVLHVHDDEVWDVRSCGSGMVVTSSRDRSVAVSDIRSADPSDHFRLAVGNWIVRVKATPACLLLLGFDAQLRVVRKRSLKM
Sbjct:    1 MERALHSQDVVKAVLSYLDHYTLLRRGARVSRGWQRVIEAGGLGEEACRLAFWSHYRSQDECYPNDFATISTSSFSWRKECKSRRLNGWSPREDIVGPSTVCDITGDVIFAVAATPVDSLFICGGENGILYFIDITEEVGKAIRYHFEAHTGTLLALSARKSCPGRDGVSMYHVISGDTLGCIQINAVDVVHRTRHILYTLRLKTSVLHFVRLRRDMQASALRDGTVFCWRDYSGSQEKSGEGHGSGEANATHAHNGEVTHFTGIGEENRVRLLVTASNSDQNLRTWRTAFGKDPGNSVRVELEPMQVLSLASLSVGSLCTSSGMSVAPDGVVTLGFGNGRVCSLDAYTCSLISVLHVHDDEVWDVRSCGSGMVVTSSRDRSVAVSDIRSADPSDHFRLAVGNWIVRVKATPACLLLLGFDAQLRVVRKRSLKM 434

The following BLAST results are available for this feature:

BLAST of EWM22432.1 vs. NCBI_GenBank

BLAST of EWM22432.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102938\|gb\|EWM22432.1\|	0.000e+0	100.00	WD40-repeat-containing protein [Nannochloropsis ga...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8230	rna8230	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications