rna823, rna823 (mRNA) Nannochloropsis gaditana

Overview
Namerna823
Unique Namerna823
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2111
Alignment locationCM002456.1:503059..505264 -

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Properties
Property NameValue
Producthomocysteine s-methyltransferase
Orig transcript idgnl|cribi|Naga_100017g12.327.mrna
Orig protein idgnl|cribi|Naga_100017g12.327
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:503059..505264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g12gene787Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna823rna823-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29829.1cds823Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna823 ID=rna823|Name=rna823|organism=Nannochloropsis gaditana|type=mRNA|length=2111bp
CGGGCTTGAATGGGAATACATCACTTTTACGCGTTCTCGGGGCTATATCT
CCTCTTTTCCAGGTATCTCTCAATCCAAATACACAAGTTATGTGGCAAAA
TGGGCTTTCGCGTTGGAAAGCTCACGATTTAAGAGAGTCGAAGGAGCTGA
AGCCAGAGTAAGGCGAGTAGCTTACATTGGTTAAAAAGGTGCCACTCTTG
TCAATTGAGATGCGCGATGAATCATCACACAACCCTTTAGCTGCCATGCT
GGCCCATCAAAATTGCATCATTAGTGATGGGGGCATGGGCACGCTTCTGG
AGGCCTACATCGGTGCACCCTTGGATTCTAAATTGTGGTCGGCGGGGTGT
TTGCGCACCCACCCTTCAGCCATCAAAGCCGTGCATAGGCAATACTTCGA
AGCTGGTGCGGACATAGCAACAGCGGCGACGTACCAGGCCAGCTTGGAGG
GGTTCATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCCGAGGAT
TTGATCCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGAATTTTG
GGCGGCGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGGAGGCGG
GGGGAGGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGGTGCTAC
GGAGCGGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGGCTTGAC
GGTGGAAGAGGTGAGTCGAGAGATTGTCCCTGCCTTGGACGTGCTTTTGC
CAAGTCGCACCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGC
TCACCTTGTATGCGTCCTCATGTCCCCCTTCTGCAGCTCACCTTGTATGC
GTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCC
TTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACC
TTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTC
ATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCAATCTGC
AGCTCACCCTGTATGCGTCCTCATGTCCCCTCCTGCAGCTGATGGACTGG
CACCGTCCCCGCCTTGCAATCCTGGGTGAAACAGACGCTGACTTACTGGC
CTTCGAGACGATCCCTTGCCAAGCTGAGGTGGTCGCGATCCTGCAACTCC
TTCGGGAAGGACGGGAACAGGAAGGCTCAGCTCCCACCTCGAGACGCACT
CCCTGCTGGATTACCCTGGCTTGCCAAGACGCCACCCATCTCAACAGCGG
CGAGTCCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCGCTGGATACGGGTT
CACGGCCCCAAGTAGTGGGGTTAGGAGTGAATTGCTGCGCGCCTCAGCAT
GTGGAGGGGGCCCTTACGGTGCTACGGGAAGGCTTACTGACCATTTCCGC
CGCGAAAGAGGTCATTAGCGCAGCGAAAGGAAGTGAACGCATCCTTATCG
CATACCCGAATTCAGGAGAGGTGTGGCAAGACAAGAGGTGGCTTCCGGGG
ACGGGAGTGTGCCCCTCTTCGCGAGATTTTGCCGACTTGGCTCGTAAATG
GGTGGTGGCGGGCGCCCGCGTTCTGGGGGGATGCTGCAGAACCACGCCCG
AAACTATAAAAGCCTTACGAGCGTGCTTGCTAGCGAAGTAGAATTCATTC
TGATTGTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTGAGG
GATGGAAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGGATGAATTCA
TTCTGATTGTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTG
AGGGATGGAAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGAATGAAT
TCATTCTGATTGTTTAAATTGCATGCGTTTAATAGCCAAACGGACACTTT
GTGAGGGATGGAAATAGCCTGAATTAGGGTTAAATTGAAAGTCTCAAAAC
AGTGAACAACTTTAAAATTTGGGGCCTTTCTATACTACTCGAGTCTTTAA
AATGGATTGTTCAAAGTAACTTTTTTTCTTCTAAAGAAAAATCACTTCGA
AAGCGTTTTTC
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protein sequence of rna823

>rna823-protein ID=rna823-protein|Name=rna823|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGG
GTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGET
DADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDA
THLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREG
LLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFA
DLARKWVVAGARVLGGCCRTTPETIKALRACLLAK
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mRNA from alignment at CM002456.1:503059..505264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna823 ID=rna823|Name=rna823|organism=Nannochloropsis gaditana|type=mRNA|length=2206bp|location=Sequence derived from alignment at CM002456.1:503059..505264- (Nannochloropsis gaditana)
CGGGCTTGAATGGGAATACATCACTTTTACGCGTTCTCGGGGCTATATCT CCTCTTTTCCAGGTATCTCTCAATCCAAATACACAAGTTATGTGGCAAAA TGGGCTTTCGCGTTGGAAAGCTCACGATTTAAGAGAGTCGAAGGAGCTGA AGCCAGAGTAAGGCGAGTAGCTTACATTGGTTAAAAAGGTGCCACTCTTG TCAATTGAGATGCGCGATGAATCATCACACAACCCTTTAGCTGCCATGCT GGCCCATCAAAATTGCATCATTAGTGATGGGGGCATGGGCACGCTTCTGG AGGCCTACATCGGTGCACCCTTGGATTCTAAATTGTGGTGAGTTATCACA TCCCATGTCGCAGTCGTAGAAAGCCTTCAAGCACGCACATTCCCCAGAAA TTGTTTTCTACCACGCTGTGGCTTATTCACAGGTCGGCGGGGTGTTTGCG CACCCACCCTTCAGCCATCAAAGCCGTGCATAGGCAATACTTCGAAGCTG GTGCGGACATAGCAACAGCGGCGACGTACCAGGCCAGCTTGGAGGGGTTC ATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCCGAGGATTTGAT CCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGAATTTTGGGCGG CGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGGAGGCGGGGGGA GGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGGTGCTACGGAGC GGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGGCTTGACGGTGG AAGAGGTGAGTCGAGAGATTGTCCCTGCCTTGGACGTGCTTTTGCCAAGT CGCACCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACC TTGTATGCGTCCTCATGTCCCCCTTCTGCAGCTCACCTTGTATGCGTCCT CATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTG CAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTA TGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCC CCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCAATCTGCAGCTC ACCCTGTATGCGTCCTCATGTCCCCTCCTGCAGCTGATGGACTGGCACCG TCCCCGCCTTGCAATCCTGGGTGAAACAGACGCTGACTTACTGGCCTTCG AGACGATCCCTTGCCAAGCTGAGGTGGTCGCGATCCTGCAACTCCTTCGG GAAGGACGGGAACAGGAAGGCTCAGCTCCCACCTCGAGACGCACTCCCTG CTGGATTACCCTGGCTTGCCAAGACGCCACCCATCTCAACAGCGGCGAGT CCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCGCTGGATACGGGTTCACGG CCCCAAGTAGTGGGGTTAGGAGTGAATTGCTGCGCGCCTCAGCATGTGGA GGGGGCCCTTACGGTGCTACGGGAAGGCTTACTGACCATTTCCGCCGCGA AAGAGGTCATTAGCGCAGCGAAAGGAAGTGAACGCATCCTTATCGCATAC CCGAATTCAGGAGAGGTGTGGCAAGACAAGAGGTGGCTTCCGGGGACGGG AGTGTGCCCCTCTTCGCGAGATTTTGCCGACTTGGCTCGTAAATGGGTGG TGGCGGGCGCCCGCGTTCTGGGGGGATGCTGCAGAACCACGCCCGAAACT ATAAAAGCCTTACGAGCGTGCTTGCTAGCGAAGTAGAATTCATTCTGATT GTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTGAGGGATGG AAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGGATGAATTCATTCTG ATTGTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTGAGGGA TGGAAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGAATGAATTCATT CTGATTGTTTAAATTGCATGCGTTTAATAGCCAAACGGACACTTTGTGAG GGATGGAAATAGCCTGAATTAGGGTTAAATTGAAAGTCTCAAAACAGTGA ACAACTTTAAAATTTGGGGCCTTTCTATACTACTCGAGTCTTTAAAATGG ATTGTTCAAAGTAACTTTTTTTCTTCTAAAGAAAAATCACTTCGAAAGCG TTTTTC
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Coding sequence (CDS) from alignment at CM002456.1:503059..505264-

>rna823 ID=rna823|Name=rna823|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002456.1:503059..505264- (Nannochloropsis gaditana)
CTGATGGACTGGCACCGTCCCCGCCTTGCAATCCTGGGTGAAACAGACGC
TGACTTACTGGCCTTCGAGACGATCCCTTGCCAAGCTGAGGTGGTCGCGA
TCCTGCAACTCCTTCGGGAAGGACGGGAACAGGAAGGCTCAGCTCCCACC
TCGAGACGCACTCCCTGCTGGATTACCCTGGCTTGCCAAGACGCCACCCA
TCTCAACAGCGGCGAGTCCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCGC
TGGATACGGGTTCACGGCCCCAAGTAGTGGGGTTAGGAGTGAATTGCTGC
GCGCCTCAGCATGTGGAGGGGGCCCTTACGGTGCTACGGGAAGGCTTACT
GACCATTTCCGCCGCGAAAGAGGTCATTAGCGCAGCGAAAGGAAGTGAAC
GCATCCTTATCGCATACCCGAATTCAGGAGAGGTGTGGCAAGACAAGAGG
TGGCTTCCGGGGACGGGAGTGTGCCCCTCTTCGCGAGATTTTGCCGACTT
GGCTCGTAAATGGGTGGTGGCGGGCGCCCGCGTTCTGGGGGGATGCTGCA
GAACCACGCCCGAAACTATAAAAGCCTTACGAGCGTGCTTGCTAGCGAAG
TAGATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCCGAGGATTT
GATCCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGAATTTTGGG
CGGCGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGGAGGCGGGG
GGAGGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGGTGCTACGG
AGCGGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGGCTTGACGG
TGGAAGAGCTGATGGACTGGCACCGTCCCCGCCTTGCAATCCTGGGTGAA
ACAGACGCTGACTTACTGGCCTTCGAGACGATCCCTTGCCAAGCTGAGGT
GGTCGCGATCCTGCAACTCCTTCGGGAAGGACGGGAACAGGAAGGCTCAG
CTCCCACCTCGAGACGCACTCCCTGCTGGATTACCCTGGCTTGCCAAGAC
GCCACCCATCTCAACAGCGGCGAGTCCCTAGTAAGCTGTGTGCAGCTCGT
GAAGGCGCTGGATACGGGTTCACGGCCCCAAGTAGTGGGGTTAGGAGTGA
ATTGCTGCGCGCCTCAGCATGTGGAGGGGGCCCTTACGGTGCTACGGGAA
GGCTTACTGACCATTTCCGCCGCGAAAGAGGTCATTAGCGCAGCGAAAGG
AAGTGAACGCATCCTTATCGCATACCCGAATTCAGGAGAGGTGTGGCAAG
ACAAGAGGTGGCTTCCGGGGACGGGAGTGTGCCCCTCTTCGCGAGATTTT
GCCGACTTGGCTCGTAAATGGGTGGTGGCGGGCGCCCGCGTTCTGGGGGG
ATGCTGCAGAACCACGCCCGAAACTATAAAAGCCTTACGAGCGTGCTTGC
TAGCGAAGTAGATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCC
GAGGATTTGATCCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGA
ATTTTGGGCGGCGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGG
AGGCGGGGGGAGGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGG
TGCTACGGAGCGGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGG
CTTGACGGTGGAAGAG
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Synonyms
Publications