EWM29829.1, cds823 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|585112410|gb|EWM29829.1| (homocysteine s-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 1 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 285 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK Sbjct: 1 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 285
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|585112411|gb|EWM29830.1| (homocysteine s-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 412.535 bits (1059), Expect = 6.074e-140 Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 0 Query: 85 ELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 285 +LMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK Sbjct: 293 QLMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 493 HSP 2 Score: 174.481 bits (441), Expect = 1.886e-47 Identity = 96/128 (75.00%), Postives = 102/128 (79.69%), Query Frame = 0 Query: 1 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAIL--GETDADLL----AFETIPCQAEVVAILQL 122 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEE+ P L +L T + + F + PC V +LQL Sbjct: 83 MSSAGVRVTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEEVSREIVPALDVLLPSRTSSPCMRPHAPFCSSPCMRPHVPLLQL 210
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|553189163|ref|XP_005854945.1| (homocysteine S-methyltransferase, partial [Nannochloropsis gaditana CCMP526] >gi|422294116|gb|EKU21416.1| homocysteine S-methyltransferase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.745 bits (761), Expect = 1.208e-99 Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0 Query: 85 ELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVW 231 +LMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVW Sbjct: 9 QLMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVW 155
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|1082655086|gb|OFZ80118.1| (homocysteine S-methyltransferase [Bdellovibrionales bacterium RIFOXYD1_FULL_53_11]) HSP 1 Score: 196.438 bits (498), Expect = 1.128e-57 Identity = 121/279 (43.37%), Postives = 159/279 (56.99%), Query Frame = 0 Query: 12 QAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKG-SERILIAYPNSGEVWQDKR--WL-PGTG-VCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 285 +A LIRK V +A+EARD FW + AG R++PL+AAS+G YGA ADGSEYRG YGL+V EL D+HR RLA L +T AD+LAFET+PC E A ++LL EG + P WI+ +C+D + G C+ +V GS PQ+V +GVNC AP+HVE +I AA+ +++ +I YPNS E+W +R W+ P G V P AD A +W AGAR++GGCCRT I+ALR LL K Sbjct: 83 EAASLIRKSVEIAVEARDAFWLV---------QDSRAG---REKPLIAASIGPYGAFLADGSEYRGFYGLSVRELADFHRDRLAALVQTRADMLAFETVPCPEEAEAYVRLLEEGEAK----------PAWISFSCKDGLSVCQGVPFERCIDIV----AGS-PQIVAIGVNCTAPEHVE-----------------SLIRAARSRTDKAIIVYPNSSEIWDARRRTWVSPAHGPVKP-----ADFAPQWFEAGARIIGGCCRTGIADIRALRTRLLQK 312
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|504246229|ref|WP_014433331.1| (homocysteine S-methyltransferase [Caldilinea aerophila] >gi|381383279|dbj|BAM00096.1| homocysteine S-methyltransferase [Caldilinea aerophila DSM 14535 = NBRC 104270]) HSP 1 Score: 196.052 bits (497), Expect = 2.201e-57 Identity = 116/277 (41.88%), Postives = 154/277 (55.60%), Query Frame = 0 Query: 8 VTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVW--QDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACL 282 + AQ +L R V LA EA +E+ A E G R PL+AAS+G YGA ADGSEYRG YGL+VE L+ WHRPR++ L ET+ADL A ETIPC AE A+++LL E + P W++ +C+D L+SGE V+L + Q+V +GVNC AP+ VE L + R +++ L+ YPNSGE W + + W+ GTGV DFA+ AR+W AGAR++GGCCRTTP I A+ L Sbjct: 81 LNEAQVRNLFRLSVQLAAEAIEEYLA------------ETQAGPARLPPLIAASIGPYGAYLADGSEYRGDYGLSVEALIAWHRPRVSALAETEADLFACETIPCLAEAEALIRLLEEYPDM----------PAWLSFSCRDGESLSSGEPFAEAVRLANRSE-----QIVAVGVNCTAPRFVESLLQIAR----------------PLTDKPLLCYPNSGEAWDAEARCWVEGTGVT----DFAEPARRWYAAGARLIGGCCRTTPADIAAMAQAL 310
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|1194436361|gb|OUC08407.1| (homocysteine methyltransferase [Litorilinea aerophila]) HSP 1 Score: 195.282 bits (495), Expect = 2.883e-57 Identity = 118/273 (43.22%), Postives = 154/273 (56.41%), Query Frame = 0 Query: 8 VTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKR--WLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKAL 278 ++R QAE+L+ V LA EARD FWA + A R RPLVAAS+G YGA ADGSEYRG YGL+VE LMD+HRPR+A+L + ADLLA ETIPCQAE A+++LL E + W++ +C D H+ GE CV+L + QV+ +G+NC P+HVE L A ++R L+AYPNSGE W + W+ G+G DF A +W AGAR++GGCCRTTP I+A+ Sbjct: 82 LSREQAEELLLLSVRLAQEARDLFWA------------DPANRQGRIRPLVAASIGPYGAYLADGSEYRGDYGLSVEALMDFHRPRMAVLAASGADLLACETIPCQAEGEALVRLLAEFPQAVA----------WLSFSCCDDLHVCHGEPFARCVRLASRSE-----QVIAVGLNCTPPRHVEALLR----------------HAVGVTDRPLVAYPNSGETWDAEHHCWVAGSG----ETDFRTPALRWYAAGARLIGGCCRTTPADIQAM 307
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|944227510|gb|KQK91914.1| (hypothetical protein SETIT_036632mg [Setaria italica]) HSP 1 Score: 193.356 bits (490), Expect = 5.193e-57 Identity = 114/279 (40.86%), Postives = 151/279 (54.12%), Query Frame = 0 Query: 8 VTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYG--LTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQD--KRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACL 282 +T +AEDL++ V LA+EARDEFW + T R LVAAS+G YGA ADGSEY G+YG +T E+L D+HR RL +L DL+AFE IP + E A+++LL E Q P WI + D HL SGES C+Q++ A + +V +GVNC PQ +EG + R K +++ + YPNSGEVW KRWLP C + F LA++W AGA ++GGCCRTTP TI+A+ L Sbjct: 32 MTLDEAEDLLQTSVKLALEARDEFW----------KSTLRKSKPIYNRALVAASIGSYGAYLADGSEYSGSYGADITTEKLKDFHRRRLQVLAGAGPDLIAFEAIPNKMEAQALVELLEEENIQ---------VPSWICFSSVDGKHLCSGESFADCLQILNASE-----KVAVVGVNCTPPQFIEGIICEFR----------------KQTKKAIAVYPNSGEVWDGIAKRWLPAE--CLGHKSFDALAKRWHEAGASLIGGCCRTTPSTIRAVSKIL 268
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|1174567826|gb|OQU92985.1| (hypothetical protein SORBI_3001G453100 [Sorghum bicolor]) HSP 1 Score: 192.971 bits (489), Expect = 7.588e-57 Identity = 116/278 (41.73%), Postives = 153/278 (55.04%), Query Frame = 0 Query: 12 QAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYG--LTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVW--QDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK 285 +AEDL+R V LA+EARDEFW + R+ R LVAASVG YGA ADGSEY G+YG +T E+L D+HR RL +L DL+AFE IP + E A+++LL E + Q P WI + D +L SGES C+++ LDT + VVG VNC PQ +EG + + K +++ + YPNSGEVW + KRWLP C + F LA++W AGA ++GGCCRTTP TI+A+ L K Sbjct: 32 EAEDLLRTSVKLAVEARDEFWKSALRK----------AKPIYNRALVAASVGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKMEAQALVELLEEEKVQ---------VPSWICFSSVDGKNLCSGESFADCLKI---LDTSDKVAVVG--VNCTPPQFIEGIICEFK----------------KQTKKAIAVYPNSGEVWDGRAKRWLPVE--CLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGK 267
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|514820963|ref|XP_004985165.1| (PREDICTED: homocysteine S-methyltransferase 1 [Setaria italica] >gi|514820965|ref|XP_004985166.1| PREDICTED: homocysteine S-methyltransferase 1 [Setaria italica] >gi|944227511|gb|KQK91915.1| hypothetical protein SETIT_036632mg [Setaria italica]) HSP 1 Score: 192.971 bits (489), Expect = 3.415e-56 Identity = 116/279 (41.58%), Postives = 153/279 (54.84%), Query Frame = 0 Query: 8 VTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYG--LTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQD--KRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACL 282 +T +AEDL++ V LA+EARDEFW + R K K R LVAAS+G YGA ADGSEY G+YG +T E+L D+HR RL +L DL+AFE IP + E A+++LL E Q P WI + D HL SGES C+Q++ A + +V +GVNC PQ +EG + R K +++ + YPNSGEVW KRWLP C + F LA++W AGA ++GGCCRTTP TI+A+ L Sbjct: 81 MTLDEAEDLLQTSVKLALEARDEFWKSTLR----KSKP------IYNRALVAASIGSYGAYLADGSEYSGSYGADITTEKLKDFHRRRLQVLAGAGPDLIAFEAIPNKMEAQALVELLEEENIQ---------VPSWICFSSVDGKHLCSGESFADCLQILNASE-----KVAVVGVNCTPPQFIEGIICEFR----------------KQTKKAIAVYPNSGEVWDGIAKRWLPAE--CLGHKSFDALAKRWHEAGASLIGGCCRTTPSTIRAVSKIL 317
BLAST of EWM29829.1 vs. NCBI_GenBank
Match: gi|1053899271|ref|WP_066096701.1| (homocysteine S-methyltransferase [Hydrogenophaga sp. LPB0072] >gi|1026338846|gb|OAD39332.1| homocysteine S-methyltransferase [Hydrogenophaga sp. LPB0072] >gi|1078664384|gb|AOW11492.1| homocysteine S-methyltransferase [Hydrogenophaga sp. LPB0072]) HSP 1 Score: 192.586 bits (488), Expect = 4.649e-56 Identity = 113/273 (41.39%), Postives = 152/273 (55.68%), Query Frame = 0 Query: 9 TRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQ--DKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALR 279 +RA A L+R+ + LAIEARD+FWA A RQ+PLVAASVG YGA ADGSEYRG YG+ + LMD+HRPR+A+L E ADLLA ETIPC E +AI +LL P WI+ +C+D H + GE L CV + A+ PQ+ +G+NC AP+ + + R+ + + ++ YPNSGE + K W GV +++DFA A +W GAR++GGCCRT PE I+A+R Sbjct: 88 SRADAAMLMRRSIELAIEARDQFWA------------NPANRIGRQKPLVAASVGPYGAMLADGSEYRGHYGVARQALMDFHRPRMAVLAEAGADLLACETIPCLDEAMAIAELL----------PDFGSISAWISFSCKDGEHNSQGERLADCVAALDAV-----PQIAAIGINCTAPEWIPSLVEQARQ----------------HTAKPIVVYPNSGEHYDATSKEW---HGVS-NAQDFAQQAMRWSQRGARLVGGCCRTGPEDIRAVR 313 The following BLAST results are available for this feature:
BLAST of EWM29829.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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