rna8228, rna8228 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8228
Unique Name	rna8228
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	786
Alignment location	KK037248.1:132158..133435 +

Link to JBrowse

Properties


Property Name	Value
Product	Cyclin C/H/T/L
Orig transcript id	gnl\|cribi\|Naga_100011g40.3456.mrna
Orig protein id	gnl\|cribi\|Naga_100011g40.3456
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:132158..133435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g40	gene7970	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8228	rna8228-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22456.1	cds8204	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:132158..133435+
coding sequence from alignment at KK037248.1:132158..133435+

mRNA sequence

>rna8228 ID=rna8228|Name=rna8228|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
ATGTCAGGTGCTATTGTGGCACCCACGCGTATGGCTTTAACCATGTACAA
GACGAAGCGCGTTGGTGCCAAAAAAGGTTACGAATTGCTGAAGAAGAAGT
CGGATGCATTGAAAGTTCGCTTTCGTGATATAATGAAGGACATAGCGCGA
ACCAAAGGAAATATGGCTGACCAGGGGTCAAGTGCTTTTTTCTCGCTTAC
GCAGGCGCAGTATGCGGCAGGTGATTTCCGGCAACAAGTTTTGCAAGGCA
GCCTGACGGCCTCAGTGCGGGTACACACACACACGGACAACGTGGCAGGC
GTGAAGCTGCCGGTGTTTCGGCAATACGAGTTACAGAGCGAAGTAAAGAG
TAAATCTGACAGAGACAATTTAGGGTTGGCGCAAGGCGGACGTCAAATCA
AGGCCTGTAAGGAAAAATTCACTGTATTCCTCACCAACCTTGTCCGACTT
GCTTCTCTCCAGACTTCCTTCATAACCCTCGACGAAGCCCTCAAGGTGAC
AAATCGCAGGGTGAACGCTCTTGAAAATGTTACGATTCCACGCATCGAGG
CTATTCTGGCTTACATCAATCGTGAGCTGGATGAACTAGAGCGCGAGGAT
TTCACTCGTCTCAAGAAAGTGCAGGGGAGTAAACGGACTGCACAGGCTGC
AGCAGAAGCAGCTGAGGAAGCTTTGCACAAGGCTGCCGCTGCTGCTGGCG
CGAGATCAAGCAAAATCGAGGGTGGTTTAGTCAAGGATGTCACGGCCCAG
TACGACACTGCCGGGGACAGTGATATCGTCTTTTGA

protein sequence of rna8228

>rna8228-protein ID=rna8228-protein|Name=rna8228|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMW
NACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYA
LRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGEL
GGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAV
RKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVD
VYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTR
RAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI

mRNA from alignment at KK037248.1:132158..133435+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8228 ID=rna8228|Name=rna8228|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at KK037248.1:132158..133435+ (Nannochloropsis gaditana)
ATGTACTTTACAGATGAGCAGTTGGCAAAGGGCACAGCCAGCCGGATGGA
TGGAATtttagaggaggaggaagagaattATCGGCGCAAAACGAATGAGT
TTGTAGTGCAGCTATGCCGGAAGTTGGACATGAACCCAATGAGTATGTGG
AATGCGTGCACTCTAACGCATCGTTTTTTCACCTTTGAATCGTTCAAACG
CCGAGATCGTCTCTTGGTGGGGGCGACGGCCGTGTTTCTGGGGGGCAAGA
TGGCCGAGAACGCCCGTCGCCTGCTAGATGTCGTGGGATACTATTACGCG
CTTCGGCACAAGGCGCCGAACCTTCCGCCTGAGAAGAGTAAGCTGGTGCA
AGATCTGAAAGACGAGTTACTGGCACACGAGCGATTGATGCTTCATGTAA
TCGGTTTCAACCTCTACTTTGAAATCCCTCGAGCCAAGTTTGGAGAGTTA
GGTGGCAAGGTCAAAGGTACGTTTTGGAGGCAAGGGGCAGCCTGTCTTTA
TTTGTTTACCAAGTCAGTAGCATCATTGTCAATGCCTTCATTTTTTACAT
TTCACAGCTTATGCCCCCGATGCTTATGAAAAAGTAGTGCCTTGGGCAGC
CAATGTTTTGAATGATCTATACAGCAAGACCACCTTGTGTTTACGCTGCG
ATGCCTCTGTCATTGCACAGATTGCCTTATATCTTGCCGTGCGCAAATTT
TCCTTGCCTGAGCCGAGCAGAGAGGCCAGAGTTGGTGGAAAGACGGACGT
GAAGCCTTTGGAAGAACGAGAAAATTGGCGAGAGGTGTTCGGGCTGAAGG
ACGATGCTCTTACATATTGTAAGTGTACAACTGAATGAAAGCGGATTCGA
CGGTCTTGGTGCATTGATTGGAGGAATGTAATGTCAGACTTACTGTGTCG
TTTCTACCACCTCTCCTTGGGCTGTATCTGCACTTTTGTACATCTTTTCA
GGCTTGATAAAGCGGGCTGTTGACGTTTACAGGGGAAACCATTACGCTGC
TTACCGGCCCATGGTGCGTTGCATGGATCTAGAGATCGCCGGTGCACTAG
CCAAGGAGAAGCGCGAAAATGGGAGTGGCGGTGACATGCCGAGCGCCTCA
CCCCAAAAACCACCTTCGTTGCCTGCAGCCCCTCCCTAAGTCTGGGTGTT
GAAAAACCGGCACCGACAGGACGCGCAGGGCATTTATTGTGGGGCACGAC
GAAGGGCAAGTAGAACCGGTTAATGTACGCCATATGATAGTCTCTGGGCT
TAAGGGAGACGCTTTCCTGCACATATAA

Coding sequence (CDS) from alignment at KK037248.1:132158..133435+

>rna8228 ID=rna8228|Name=rna8228|organism=Nannochloropsis gaditana|type=CDS|length=4008bp|location=Sequence derived from alignment at KK037248.1:132158..133435+ (Nannochloropsis gaditana)
ATGTACTTTACAGATGAGCAGTTGGCAAAGGGCACAGCCAGCCGGATGGA
TGGAATtttagaggaggaggaagagaattATCGGCGCAAAACGAATGAGT
TTGTAGTGCAGCTATGCCGGAAGTTGGACATGAACCCAATGAGTATGTGG
AATGCGTGCACTCTAACGCATCGTTTTTTCACCTTTGAATCGTTCAAACG
CCGAGATCGTCTCTTGGTGGGGGCGACGGCCGTGTTTCTGGGGGGCAAGA
TGGCCGAGAACGCCCGTCGCCTGCTAGATGTCGTGGGATACTATTACGCG
CTTCGGCACAAGGCGCCGAACCTTCCGCCTGAGAAGAGTAAGCTGGTGCA
AGATCTGAAAGACGAGTTACTGGCACACGAGCGATTGATGCTTCATGTAA
TCGGTTTCAACCTCTACTTTGAAATCCCTCGAGCCAAGTTTGGAGAGTTA
GGTGGCAAGGTCAAAGCTTATGCCCCCGATGCTTATGAAAAAGTAGTGCC
TTGGGCAGCCAATGTTTTGAATGATCTATACAGCAAGACCACCTTGTGTT
TACGCTGCGATGCCTCTGTCATTGCACAGATTGCCTTATATCTTGCCGTG
CGCAAATTTTCCTTGCCTGAGCCGAGCAGAGAGGCCAGAGTTGGTGGAAA
GACGGACGTGAAGCCTTTGGAAGAACGAGAAAATTGGCGAGAGGTGTTCG
GGCTGAAGGACGATGCTCTTACATATTGCTTGATAAAGCGGGCTGTTGAC
GTTTACAGGGGAAACCATTACGCTGCTTACCGGCCCATGGTGCGTTGCAT
GGATCTAGAGATCGCCGGTGCACTAGCCAAGGAGAAGCGCGAAAATGGGA
GTGGCGGTGACATGCCGAGCGCCTCACCCCAAAAACCACCTTCGACGCGC
AGGGCATTTATTGTGGGGCACGACGAAGGGCAAGTAGAACCGGTTAATGT
ACGCCATATGATAGTCTCTGGGCTTAAGGGAGACGCTTTCCTGCACATAT
AAATGTACTTTACAGATGAGCAGTTGGCAAAGGGCACAGCCAGCCGGATG
GATGGAATtttagaggaggaggaagagaattATCGGCGCAAAACGAATGA
GTTTGTAGTGCAGCTATGCCGGAAGTTGGACATGAACCCAATGAGTATGT
GGAATGCGTGCACTCTAACGCATCGTTTTTTCACCTTTGAATCGTTCAAA
CGCCGAGATCGTCTCTTGGTGGGGGCGACGGCCGTGTTTCTGGGGGGCAA
GATGGCCGAGAACGCCCGTCGCCTGCTAGATGTCGTGGGATACTATTACG
CGCTTCGGCACAAGGCGCCGAACCTTCCGCCTGAGAAGAGTAAGCTGGTG
CAAGATCTGAAAGACGAGTTACTGGCACACGAGCGATTGATGCTTCATGT
AATCGGTTTCAACCTCTACTTTGAAATCCCTCGAGCCAAGTTTGGAGAGT
TAGGTGGCAAGGTCAAAGCTTATGCCCCCGATGCTTATGAAAAAGTAGTG
CCTTGGGCAGCCAATGTTTTGAATGATCTATACAGCAAGACCACCTTGTG
TTTACGCTGCGATGCCTCTGTCATTGCACAGATTGCCTTATATCTTGCCG
TGCGCAAATTTTCCTTGCCTGAGCCGAGCAGAGAGGCCAGAGTTGGTGGA
AAGACGGACGTGAAGCCTTTGGAAGAACGAGAAAATTGGCGAGAGGTGTT
CGGGCTGAAGGACGATGCTCTTACATATTGCTTGATAAAGCGGGCTGTTG
ACGTTTACAGGGGAAACCATTACGCTGCTTACCGGCCCATGGTGCGTTGC
ATGGATCTAGAGATCGCCGGTGCACTAGCCAAGGAGAAGCGCGAAAATGG
GAGTGGCGGTGACATGCCGAGCGCCTCACCCCAAAAACCACCTTCGACGC
GCAGGGCATTTATTGTGGGGCACGACGAAGGGCAAGTAGAACCGGTTAAT
GTACGCCATATGATAGTCTCTGGGCTTAAGGGAGACGCTTTCCTGCACAT
ATAAATGTACTTTACAGATGAGCAGTTGGCAAAGGGCACAGCCAGCCGGA
TGGATGGAATtttagaggaggaggaagagaattATCGGCGCAAAACGAAT
GAGTTTGTAGTGCAGCTATGCCGGAAGTTGGACATGAACCCAATGAGTAT
GTGGAATGCGTGCACTCTAACGCATCGTTTTTTCACCTTTGAATCGTTCA
AACGCCGAGATCGTCTCTTGGTGGGGGCGACGGCCGTGTTTCTGGGGGGC
AAGATGGCCGAGAACGCCCGTCGCCTGCTAGATGTCGTGGGATACTATTA
CGCGCTTCGGCACAAGGCGCCGAACCTTCCGCCTGAGAAGAGTAAGCTGG
TGCAAGATCTGAAAGACGAGTTACTGGCACACGAGCGATTGATGCTTCAT
GTAATCGGTTTCAACCTCTACTTTGAAATCCCTCGAGCCAAGTTTGGAGA
GTTAGGTGGCAAGGTCAAAGCTTATGCCCCCGATGCTTATGAAAAAGTAG
TGCCTTGGGCAGCCAATGTTTTGAATGATCTATACAGCAAGACCACCTTG
TGTTTACGCTGCGATGCCTCTGTCATTGCACAGATTGCCTTATATCTTGC
CGTGCGCAAATTTTCCTTGCCTGAGCCGAGCAGAGAGGCCAGAGTTGGTG
GAAAGACGGACGTGAAGCCTTTGGAAGAACGAGAAAATTGGCGAGAGGTG
TTCGGGCTGAAGGACGATGCTCTTACATATTGCTTGATAAAGCGGGCTGT
TGACGTTTACAGGGGAAACCATTACGCTGCTTACCGGCCCATGGTGCGTT
GCATGGATCTAGAGATCGCCGGTGCACTAGCCAAGGAGAAGCGCGAAAAT
GGGAGTGGCGGTGACATGCCGAGCGCCTCACCCCAAAAACCACCTTCGAC
GCGCAGGGCATTTATTGTGGGGCACGACGAAGGGCAAGTAGAACCGGTTA
ATGTACGCCATATGATAGTCTCTGGGCTTAAGGGAGACGCTTTCCTGCAC
ATATAAATGTACTTTACAGATGAGCAGTTGGCAAAGGGCACAGCCAGCCG
GATGGATGGAATtttagaggaggaggaagagaattATCGGCGCAAAACGA
ATGAGTTTGTAGTGCAGCTATGCCGGAAGTTGGACATGAACCCAATGAGT
ATGTGGAATGCGTGCACTCTAACGCATCGTTTTTTCACCTTTGAATCGTT
CAAACGCCGAGATCGTCTCTTGGTGGGGGCGACGGCCGTGTTTCTGGGGG
GCAAGATGGCCGAGAACGCCCGTCGCCTGCTAGATGTCGTGGGATACTAT
TACGCGCTTCGGCACAAGGCGCCGAACCTTCCGCCTGAGAAGAGTAAGCT
GGTGCAAGATCTGAAAGACGAGTTACTGGCACACGAGCGATTGATGCTTC
ATGTAATCGGTTTCAACCTCTACTTTGAAATCCCTCGAGCCAAGTTTGGA
GAGTTAGGTGGCAAGGTCAAAGCTTATGCCCCCGATGCTTATGAAAAAGT
AGTGCCTTGGGCAGCCAATGTTTTGAATGATCTATACAGCAAGACCACCT
TGTGTTTACGCTGCGATGCCTCTGTCATTGCACAGATTGCCTTATATCTT
GCCGTGCGCAAATTTTCCTTGCCTGAGCCGAGCAGAGAGGCCAGAGTTGG
TGGAAAGACGGACGTGAAGCCTTTGGAAGAACGAGAAAATTGGCGAGAGG
TGTTCGGGCTGAAGGACGATGCTCTTACATATTGCTTGATAAAGCGGGCT
GTTGACGTTTACAGGGGAAACCATTACGCTGCTTACCGGCCCATGGTGCG
TTGCATGGATCTAGAGATCGCCGGTGCACTAGCCAAGGAGAAGCGCGAAA
ATGGGAGTGGCGGTGACATGCCGAGCGCCTCACCCCAAAAACCACCTTCG
ACGCGCAGGGCATTTATTGTGGGGCACGACGAAGGGCAAGTAGAACCGGT
TAATGTACGCCATATGATAGTCTCTGGGCTTAAGGGAGACGCTTTCCTGC
ACATATAA

Synonyms

Publications