EWM22456.1, cds8204 (CDS) Nannochloropsis gaditana

Overview
NameEWM22456.1
Unique Namecds8204
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:132158..132623 +
Alignment locationKK037248.1:132715..132975 +
Alignment locationKK037248.1:133109..133274 +
Alignment locationKK037248.1:133327..133435 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22456.1
ProductCyclin C/H/T/L
Orig transcript idgnl|cribi|Naga_100011g40.3456.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:132158..132623 +
KK037248.1supercontigKK037248.1:132715..132975 +
KK037248.1supercontigKK037248.1:133109..133274 +
KK037248.1supercontigKK037248.1:133327..133435 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006355regulation of transcription, DNA-templated
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR015429Cyclin_C/H/T/L
IPR013763Cyclin-like
IPR006671Cyclin_N
Homology
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|585102962|gb|EWM22456.1| (Cyclin C/H/T/L [Nannochloropsis gaditana])

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:    1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI 333
            MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI
Sbjct:    1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI 333          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168034893|ref|XP_001769946.1| (predicted protein [Physcomitrella patens] >gi|162678852|gb|EDQ65306.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 98.2117 bits (243), Expect = 1.208e-20
Identity = 69/226 (30.53%), Postives = 119/226 (52.65%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK---SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLPEPSREARVGGKTDVKP 222
            YF  E++ K + SR+DG+  ++E  +R+K   F+  L  +L +  +++  A    HRFF  +S  + DRL++    +FL GK+ E  R + +V+ + Y +R +   L  E+    +++++ K+ +LA ERL+L  +GF+L    P   +  L   +K +        V W  N +ND   +T+LCL+     IA  A++LA +  K +LPE   +    G  DV P
Sbjct:    1 YFRWEEIEKFSPSRLDGVDLKKETYFRKKYYIFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHAKNDRLIIATACMFLAGKVEETHRPIREVIVFSYHIRFRIDPLAKERIEQKEVIEEQKELVLAGERLVLTTLGFDLNIHHP---YKPLVAAIKRFKAQKTLAQVAW--NFVNDSL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPEEGDKVWWQG-FDVTP 219          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1108484351|emb|CRK87348.1| (CLUMA_CG001150, isoform A [Clunio marinus])

HSP 1 Score: 103.219 bits (256), Expect = 1.222e-20
Identity = 63/201 (31.34%), Postives = 109/201 (54.23%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK-SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR 201
            YF  E+L K T SR DG+  + E+ YRR+   F+ +   ++++   ++ +A    HRF+ F SF+   R +   + +FL GK+ E  ++  D+V   +++      L  EK +   +D K+E++  ER++L  + F+L  + P     E    +K+ +P   E+VV  A N +ND   +TTLCL+ +  +IA   LYLA +
Sbjct:  233 YFEKEEL-KNTPSRRDGVDFDTEKRYRREATNFIRECGTEMNLGYATIHSAVAFMHRFYMFHSFRTFPRFVTACSCLFLAGKVEETPKKCKDIVKKAHSI------LSSEKFASFGEDPKEEVITMERILLKTVKFDLQVDHPYRFVIEYAKCLKSNSPIPKEQVVQKAWNFVNDSL-ETTLCLQWEPEIIAVAMLYLACK 425          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|698778821|ref|XP_009822454.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574122115|gb|ETV87591.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 97.8265 bits (242), Expect = 4.277e-20
Identity = 72/214 (33.64%), Postives = 107/214 (50.00%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALR----HKAPNL---------PPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPW---AANVLNDLYSKTTLCLRCDASVIAQIALYLA 199
            YF++ +L K + S  DGI ++  + YR K  E + +L     +  MS+ +A    HRFF  +SFKR+D  L+ AT +FL  K+ E+  + +D   +Y A R    H A  +          P  S  V+ + DELL  E L+LHV+ ++L    P A   E      A+   + +  V     A + LND  S T LCLR +  VI  +A+YLA
Sbjct:    3 YFSESEL-KESPSFQDGISQQTIDVYRFKGCELIDRLAAVFRLPKMSVASAKVFFHRFFVVQSFKRQDAWLIAATCLFLAAKVEEHYMKAVDFSKHYLAYRRKLCHDAKKVEGGSRVYPSEPATSPTVEAMTDELLFTECLVLHVLAYDLGVVHPHAYVNEFVSLSMAHVDASEDMAVELKRAAWSFLND-SSNTCLCLRFEPRVITAVAVYLA 214          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|698778819|ref|XP_009822453.1| (hypothetical protein H257_01116 [Aphanomyces astaci] >gi|574122114|gb|ETV87590.1| hypothetical protein H257_01116 [Aphanomyces astaci])

HSP 1 Score: 98.5969 bits (244), Expect = 4.612e-20
Identity = 75/217 (34.56%), Postives = 108/217 (49.77%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALR----HKAPNL---------PPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYE------KVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLA 199
            YF++ +L K + S  DGI ++  + YR K  E + +L     +  MS+ +A    HRFF  +SFKR+D  L+ AT +FL  K+ E+  + +D   +Y A R    H A  +          P  S  V+ + DELL  E L+LHV+ ++L    P A   E      A+  DA E      K   W  + LND  S T LCLR +  VI  +A+YLA
Sbjct:    3 YFSESEL-KESPSFQDGISQQTIDVYRFKGCELIDRLAAVFRLPKMSVASAKVFFHRFFVVQSFKRQDAWLIAATCLFLAAKVEEHYMKAVDFSKHYLAYRRKLCHDAKKVEGGSRVYPSEPATSPTVEAMTDELLFTECLVLHVLAYDLGVVHPHAYVNEFVSLSMAHV-DASEDMAVELKRAAW--SFLND-SSNTCLCLRFEPRVITAVAVYLA 214          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168028384|ref|XP_001766708.1| (predicted protein [Physcomitrella patens] >gi|162682140|gb|EDQ68561.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 94.7449 bits (234), Expect = 3.167e-19
Identity = 74/230 (32.17%), Postives = 118/230 (51.30%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKT-DVKP--LEEREN 228
            YF+ E++ K + SR+DGI  ++E  +R+    F+  L  +L +  +++  A    HRFF  +S KR DR ++    +FL GK+ E  R L +V+ + Y +R K   L  E+ K  Q L   +LA ERL+L  +GF+L    P   +  L   +K +   A   +   A N +ND   +T+LCL+     IA  A++LA +   +  P    +V  +  +V P  LEE  N
Sbjct:    2 YFSREEIEKHSPSRLDGIDIKKETYFRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHKRNDRYMIATVCMFLAGKVEETPRPLREVIVFSYHIRFKKDPLAKERIK--QKL---VLAGERLVLTTLGFDLNIHHP---YKPLVAAIKRFKV-AQNTLAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPKEGDKVWWQEFEVTPRQLEEVSN 221          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1137213248|gb|OMO81189.1| (hypothetical protein COLO4_23726 [Corchorus olitorius])

HSP 1 Score: 93.9745 bits (232), Expect = 7.113e-18
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0
Query:    1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK----SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEP 208
             Y TDEQL + + SR DGI E  E   R    + + +    L +    M     L HRF+  +SF R D  +V A++++L  K+ E+ RR   V+  ++ +  +  NLP E     SK   DLK EL   ER +L  +GF  + E P          ++   P+  +K    A N+ ND   +TTLC+R  + V+A   +Y A R F +P P
Sbjct:    9 FYLTDEQL-QNSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKKSFARFDAKIVAASSLWLASKLEESPRRARQVIIVFHRMECRRENLPLEHLDLYSKKFSDLKAELSRTERHILKEMGFVCHVEHPHKFISNYLATLEILTPELRQK----AWNLANDSL-RTTLCVRFKSEVVACGVVYAAARMFQVPLP 214          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168054684|ref|XP_001779760.1| (predicted protein [Physcomitrella patens] >gi|162668845|gb|EDQ55444.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 93.5893 bits (231), Expect = 8.944e-18
Identity = 64/211 (30.33%), Postives = 113/211 (53.55%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSK---LVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLPE 207
            YF+ +++ K + SR+DGI  ++E  +R+    F+  L  +L +  +++  A    HRFF  +S K+ DR +V    +FL GK+ E  R L +V+ + Y +R K   +  ++ +   + +D K+ +L  ERL+L  +GF+L    P   +  L   +K +   A   +   A N +ND   +T+LCL+     IA  A++LA +  K +LP+
Sbjct:    4 YFSRDEIEKQSPSRLDGIDIKKETYFRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHKKNDRHMVATICMFLAGKVEETPRPLREVIMFSYEIRFKKDPIAVQRIRQKDVYEDQKELVLGGERLLLTTLGFDLNVHHP---YKPLVAAIKKFKV-AQNTLAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPK 209          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1137200904|gb|OMO71627.1| (hypothetical protein CCACVL1_18121 [Corchorus capsularis])

HSP 1 Score: 93.5893 bits (231), Expect = 1.385e-17
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0
Query:    1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK----SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEP 208
             Y TDEQL + + SR DGI E  E   R    + + +    L +    M     L HRF+  +SF R D  +V A++++L  K+ E+ RR   V+  ++ +  +  NLP E     SK   DLK EL   ER +L  +GF  + E P          ++   P+  +K    A N+ ND   +TTLC+R  + V+A   +Y A R F +P P
Sbjct:    9 FYLTDEQL-QNSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKKSFARFDAKIVAASSLWLASKLEESPRRARQVIIVFHRMECRRENLPLEHLDLYSKKFSDLKAELSRTERHILKEMGFVCHVEHPHKFISNYLATLEILTPELRQK----AWNLANDSL-RTTLCVRFKSEVVACGVVYAAARMFQVPLP 214          
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1175844075|ref|XP_020575630.1| (cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844077|ref|XP_020575632.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844079|ref|XP_020575633.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844081|ref|XP_020575634.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844083|ref|XP_020575635.1| cyclin-T1-4-like [Phalaenopsis equestris])

HSP 1 Score: 92.0485 bits (227), Expect = 4.754e-17
Identity = 67/212 (31.60%), Postives = 107/212 (50.47%), Query Frame = 0
Query:    2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSK-----LVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLP 206
            YF+ +++ + + SR DGI   +E   R+  + F+  L  +L +  +++  A    HRFF  +S  + DR  +    +FL GK+ E  RRL+DV+   Y + HK   L  +K K       +  K+ +L  E+L+L  +GF+L  + P     E   K K  A  +  KV   A N +ND   +T+LCL+     IA  A++LA +  K  LP
Sbjct:   35 YFSRQEIEENSPSRSDGIDANKEAYLRKSYSTFLQDLGMRLQVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRRLMDVIRVSYEIIHKKSPLAAQKMKRNFQGASEQQKELILMAEKLVLATLGFDLNVQHPYRPLVEAIKKFKV-AKCSLAKV---AWNFVNDGL-RTSLCLQFHPQHIAAGAIFLAAKFIKVKLP 241          
The following BLAST results are available for this feature:
BLAST of EWM22456.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102962|gb|EWM22456.1|0.000e+0100.00Cyclin C/H/T/L [Nannochloropsis gaditana][more]
gi|168034893|ref|XP_001769946.1|1.208e-2030.53predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1108484351|emb|CRK87348.1|1.222e-2031.34CLUMA_CG001150, isoform A [Clunio marinus][more]
gi|698778821|ref|XP_009822454.1|4.277e-2033.64hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|698778819|ref|XP_009822453.1|4.612e-2034.56hypothetical protein H257_01116 [Aphanomyces astac... [more]
gi|168028384|ref|XP_001766708.1|3.167e-1932.17predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1137213248|gb|OMO81189.1|7.113e-1832.55hypothetical protein COLO4_23726 [Corchorus olitor... [more]
gi|168054684|ref|XP_001779760.1|8.944e-1830.33predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1137200904|gb|OMO71627.1|1.385e-1732.55hypothetical protein CCACVL1_18121 [Corchorus caps... [more]
gi|1175844075|ref|XP_020575630.1|4.754e-1731.60cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8228rna8228Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications