EWM22456.1, cds8204 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|585102962|gb|EWM22456.1| (Cyclin C/H/T/L [Nannochloropsis gaditana]) HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0 Query: 1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI 333 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI Sbjct: 1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKTDVKPLEERENWREVFGLKDDALTYCLIKRAVDVYRGNHYAAYRPMVRCMDLEIAGALAKEKRENGSGGDMPSASPQKPPSTRRAFIVGHDEGQVEPVNVRHMIVSGLKGDAFLHI 333
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168034893|ref|XP_001769946.1| (predicted protein [Physcomitrella patens] >gi|162678852|gb|EDQ65306.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 98.2117 bits (243), Expect = 1.208e-20 Identity = 69/226 (30.53%), Postives = 119/226 (52.65%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK---SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLPEPSREARVGGKTDVKP 222 YF E++ K + SR+DG+ ++E +R+K F+ L +L + +++ A HRFF +S + DRL++ +FL GK+ E R + +V+ + Y +R + L E+ +++++ K+ +LA ERL+L +GF+L P + L +K + V W N +ND +T+LCL+ IA A++LA + K +LPE + G DV P Sbjct: 1 YFRWEEIEKFSPSRLDGVDLKKETYFRKKYYIFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHAKNDRLIIATACMFLAGKVEETHRPIREVIVFSYHIRFRIDPLAKERIEQKEVIEEQKELVLAGERLVLTTLGFDLNIHHP---YKPLVAAIKRFKAQKTLAQVAW--NFVNDSL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPEEGDKVWWQG-FDVTP 219
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1108484351|emb|CRK87348.1| (CLUMA_CG001150, isoform A [Clunio marinus]) HSP 1 Score: 103.219 bits (256), Expect = 1.222e-20 Identity = 63/201 (31.34%), Postives = 109/201 (54.23%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK-SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR 201 YF E+L K T SR DG+ + E+ YRR+ F+ + ++++ ++ +A HRF+ F SF+ R + + +FL GK+ E ++ D+V +++ L EK + +D K+E++ ER++L + F+L + P E +K+ +P E+VV A N +ND +TTLCL+ + +IA LYLA + Sbjct: 233 YFEKEEL-KNTPSRRDGVDFDTEKRYRREATNFIRECGTEMNLGYATIHSAVAFMHRFYMFHSFRTFPRFVTACSCLFLAGKVEETPKKCKDIVKKAHSI------LSSEKFASFGEDPKEEVITMERILLKTVKFDLQVDHPYRFVIEYAKCLKSNSPIPKEQVVQKAWNFVNDSL-ETTLCLQWEPEIIAVAMLYLACK 425
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|698778821|ref|XP_009822454.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574122115|gb|ETV87591.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 97.8265 bits (242), Expect = 4.277e-20 Identity = 72/214 (33.64%), Postives = 107/214 (50.00%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALR----HKAPNL---------PPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPW---AANVLNDLYSKTTLCLRCDASVIAQIALYLA 199 YF++ +L K + S DGI ++ + YR K E + +L + MS+ +A HRFF +SFKR+D L+ AT +FL K+ E+ + +D +Y A R H A + P S V+ + DELL E L+LHV+ ++L P A E A+ + + V A + LND S T LCLR + VI +A+YLA Sbjct: 3 YFSESEL-KESPSFQDGISQQTIDVYRFKGCELIDRLAAVFRLPKMSVASAKVFFHRFFVVQSFKRQDAWLIAATCLFLAAKVEEHYMKAVDFSKHYLAYRRKLCHDAKKVEGGSRVYPSEPATSPTVEAMTDELLFTECLVLHVLAYDLGVVHPHAYVNEFVSLSMAHVDASEDMAVELKRAAWSFLND-SSNTCLCLRFEPRVITAVAVYLA 214
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|698778819|ref|XP_009822453.1| (hypothetical protein H257_01116 [Aphanomyces astaci] >gi|574122114|gb|ETV87590.1| hypothetical protein H257_01116 [Aphanomyces astaci]) HSP 1 Score: 98.5969 bits (244), Expect = 4.612e-20 Identity = 75/217 (34.56%), Postives = 108/217 (49.77%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALR----HKAPNL---------PPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYE------KVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLA 199 YF++ +L K + S DGI ++ + YR K E + +L + MS+ +A HRFF +SFKR+D L+ AT +FL K+ E+ + +D +Y A R H A + P S V+ + DELL E L+LHV+ ++L P A E A+ DA E K W + LND S T LCLR + VI +A+YLA Sbjct: 3 YFSESEL-KESPSFQDGISQQTIDVYRFKGCELIDRLAAVFRLPKMSVASAKVFFHRFFVVQSFKRQDAWLIAATCLFLAAKVEEHYMKAVDFSKHYLAYRRKLCHDAKKVEGGSRVYPSEPATSPTVEAMTDELLFTECLVLHVLAYDLGVVHPHAYVNEFVSLSMAHV-DASEDMAVELKRAAW--SFLND-SSNTCLCLRFEPRVITAVAVYLA 214
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168028384|ref|XP_001766708.1| (predicted protein [Physcomitrella patens] >gi|162682140|gb|EDQ68561.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 94.7449 bits (234), Expect = 3.167e-19 Identity = 74/230 (32.17%), Postives = 118/230 (51.30%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEPSREARVGGKT-DVKP--LEEREN 228 YF+ E++ K + SR+DGI ++E +R+ F+ L +L + +++ A HRFF +S KR DR ++ +FL GK+ E R L +V+ + Y +R K L E+ K Q L +LA ERL+L +GF+L P + L +K + A + A N +ND +T+LCL+ IA A++LA + + P +V + +V P LEE N Sbjct: 2 YFSREEIEKHSPSRLDGIDIKKETYFRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHKRNDRYMIATVCMFLAGKVEETPRPLREVIVFSYHIRFKKDPLAKERIK--QKL---VLAGERLVLTTLGFDLNIHHP---YKPLVAAIKRFKV-AQNTLAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPKEGDKVWWQEFEVTPRQLEEVSN 221
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1137213248|gb|OMO81189.1| (hypothetical protein COLO4_23726 [Corchorus olitorius]) HSP 1 Score: 93.9745 bits (232), Expect = 7.113e-18 Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0 Query: 1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK----SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEP 208 Y TDEQL + + SR DGI E E R + + + L + M L HRF+ +SF R D +V A++++L K+ E+ RR V+ ++ + + NLP E SK DLK EL ER +L +GF + E P ++ P+ +K A N+ ND +TTLC+R + V+A +Y A R F +P P Sbjct: 9 FYLTDEQL-QNSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKKSFARFDAKIVAASSLWLASKLEESPRRARQVIIVFHRMECRRENLPLEHLDLYSKKFSDLKAELSRTERHILKEMGFVCHVEHPHKFISNYLATLEILTPELRQK----AWNLANDSL-RTTLCVRFKSEVVACGVVYAAARMFQVPLP 214
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|168054684|ref|XP_001779760.1| (predicted protein [Physcomitrella patens] >gi|162668845|gb|EDQ55444.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 93.5893 bits (231), Expect = 8.944e-18 Identity = 64/211 (30.33%), Postives = 113/211 (53.55%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSK---LVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLPE 207 YF+ +++ K + SR+DGI ++E +R+ F+ L +L + +++ A HRFF +S K+ DR +V +FL GK+ E R L +V+ + Y +R K + ++ + + +D K+ +L ERL+L +GF+L P + L +K + A + A N +ND +T+LCL+ IA A++LA + K +LP+ Sbjct: 4 YFSRDEIEKQSPSRLDGIDIKKETYFRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHKKNDRHMVATICMFLAGKVEETPRPLREVIMFSYEIRFKKDPIAVQRIRQKDVYEDQKELVLGGERLLLTTLGFDLNVHHP---YKPLVAAIKKFKV-AQNTLAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVNLPK 209
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1137200904|gb|OMO71627.1| (hypothetical protein CCACVL1_18121 [Corchorus capsularis]) HSP 1 Score: 93.5893 bits (231), Expect = 1.385e-17 Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 0 Query: 1 MYFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEK----SKLVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVRKFSLPEP 208 Y TDEQL + + SR DGI E E R + + + L + M L HRF+ +SF R D +V A++++L K+ E+ RR V+ ++ + + NLP E SK DLK EL ER +L +GF + E P ++ P+ +K A N+ ND +TTLC+R + V+A +Y A R F +P P Sbjct: 9 FYLTDEQL-QNSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKKSFARFDAKIVAASSLWLASKLEESPRRARQVIIVFHRMECRRENLPLEHLDLYSKKFSDLKAELSRTERHILKEMGFVCHVEHPHKFISNYLATLEILTPELRQK----AWNLANDSL-RTTLCVRFKSEVVACGVVYAAARMFQVPLP 214
BLAST of EWM22456.1 vs. NCBI_GenBank
Match: gi|1175844075|ref|XP_020575630.1| (cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844077|ref|XP_020575632.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844079|ref|XP_020575633.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844081|ref|XP_020575634.1| cyclin-T1-4-like [Phalaenopsis equestris] >gi|1175844083|ref|XP_020575635.1| cyclin-T1-4-like [Phalaenopsis equestris]) HSP 1 Score: 92.0485 bits (227), Expect = 4.754e-17 Identity = 67/212 (31.60%), Postives = 107/212 (50.47%), Query Frame = 0 Query: 2 YFTDEQLAKGTASRMDGILEEEEENYRRKTNEFVVQLCRKLDMNPMSMWNACTLTHRFFTFESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGYYYALRHKAPNLPPEKSK-----LVQDLKDELLAHERLMLHVIGFNLYFEIPRAKFGELGGKVKAYAPDAYEKVVPWAANVLNDLYSKTTLCLRCDASVIAQIALYLAVR--KFSLP 206 YF+ +++ + + SR DGI +E R+ + F+ L +L + +++ A HRFF +S + DR + +FL GK+ E RRL+DV+ Y + HK L +K K + K+ +L E+L+L +GF+L + P E K K A + KV A N +ND +T+LCL+ IA A++LA + K LP Sbjct: 35 YFSRQEIEENSPSRSDGIDANKEAYLRKSYSTFLQDLGMRLQVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRRLMDVIRVSYEIIHKKSPLAAQKMKRNFQGASEQQKELILMAEKLVLATLGFDLNVQHPYRPLVEAIKKFKV-AKCSLAKV---AWNFVNDGL-RTSLCLQFHPQHIAAGAIFLAAKFIKVKLP 241 The following BLAST results are available for this feature:
BLAST of EWM22456.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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