rna8210, rna8210 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8210
Unique Name	rna8210
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1323
Alignment location	KK037248.1:93638..95492 +

Link to JBrowse

Properties


Property Name	Value
Product	26s protease regulatory subunit 8
Orig transcript id	gnl\|cribi\|Naga_100011g23.3455.mrna
Orig protein id	gnl\|cribi\|Naga_100011g23.3455
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:93638..95492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g23	gene7953	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8210	rna8210-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22455.1	cds8186	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:93638..95492+
coding sequence from alignment at KK037248.1:93638..95492+

mRNA sequence

>rna8210 ID=rna8210|Name=rna8210|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
ATGGATTCGCACAGCGGGCATTCCTCCCCACCTTTCCCGGCGCCCCGCAT
GGCGTCCCTCCGGAAGCTCTACTGCCCTGTCGGGCAGGAGGCACTGGACC
AAGCCATCGTGCTCTGGCTCCCTGGCCCCCGCTCCTTCACCGGCGAAGAC
ACGGTGGAGCTTCACTGCCACGGCAGCCGAGCTGTCGTCCAGGGCGTGAC
AGAGGCCCTACTTGCCCTGGACAAGGGGGGCGAGGCTCGCGTCCGCCTGG
CGGAGCCCGGTGAGTTCACCGAGCGAGCTTTCGCGAATGGGAGGATGGAT
TTGACGGAGGTAGAGGGCCTGGCCGACCTGATCGCGGCTGACACGGCCGC
GCAGCGGAAACAGGCGTTGAAGCAGATGGGCGGGGCCTTGCGTCAGACGT
ACGAGGGGTGGCGGGAGGAGCTCAAAGTGTGCCTGGCCCATACGGAGGCG
GTCATCGACTTCGGCGACGACGAGTTAGACGTGGACGAGGCCGCCTATGA
CGCCATCCGGCCCCGCGTGAGGAGGCTGAGCGAGGAGATGCGGCGGCATC
TGGCGGACGGGGGGCGGGGGGAGGTGATCCGCGCGGGCATACGCGTCGCC
ATCGTGGGCCCGCCCAACGCAGGCAAGAGCACCATGCTCAACACCCTGGC
GCGCAGGCCGGCCGCGATCGTCTCGCCCGCGGCGGGCACTACGCGGGATG
TGGTGGAGGTCCAGTTGGACGTGGGGGGCCTACCCGTACTGGTCAGCGAC
ACGGCGGGCATCCGCGAGGCGGCGCGAGACCCGGTGGAGCAGGAGGGGAT
TCGGCGCGCGCGGGAGGCAGCGGGGCGGGCTCAGCTGACGGTGCTGGTCC
TGGACGCCGCGGAGGTGCTGGGGCAAGAGGCCTTCGCGTCCCTGGCGGGC
GTAGGGCCGTTCTCAAAGGACGCGCCGCCCGAGGACCTGGAGACGGTCCT
GAGAGCGCTCCGACGTGCGGGGGCCGGGAAGGGAGGGACATCCACGGCCG
CCTACTTGGTCTCCCTGTCCACTGGGGAAGGGGTGGAGGAGATGCTAGCA
GGACTGCAGGCGCGGTTGGAGGAGGTGTTTGACAAGGATGGGACGGACGA
CGAGCGCGCGGAAGCCCCTGTCATCACCCGTGCGCGGCACCGCGTGCACG
TGGAGCGATGCCTGGAGGCGCTGACGGCGTCCATGGGGGAACAGGGCCTG
GGCTTGGATGTGGCCGCTGAGGAGCTGCGGATCGCCTCCACGGAGCTGGG
GCGAATCACGGGGGCGGTGGACGTGGAGGAGGTGCTGGATGTGATATTCC
GAGACTTTTGTATAGGGAAATGA

protein sequence of rna8210

>rna8210-protein ID=rna8210-protein|Name=rna8210|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MSVSGPLHIPFRRELSNCAYLRGGTDMATAKVMSSRPTGPTTSGEDKGVR
SYYLSKIDELEVVVRERTQNLQRLKAQRNEWNAKVRLLREELHHLQEPGS
YVGEVVKAMGKTKVLVKVNPEGKYVVDLDKDVDITKCTPNTRVALRNDSY
TLHKILPTKVDPLVSLMKVEAVPDSTYDMIGGLDKQVREIKEVIELPIKH
PELFEALGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQ
KYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRVDGSEGGDSEVQR
TMLELLNQLDGFEPAQNIKVVMATNRIDILDAALLRPGRIDRKIEFPHPT
MASRLDILTIHSRKMNLMRGINLKSIAEKLPNASGAECKAVCTEAGMFAL
RERRIHVTQEDFEMAVAKVMKKDSDSNMSIRKLWK

mRNA from alignment at KK037248.1:93638..95492+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8210 ID=rna8210|Name=rna8210|organism=Nannochloropsis gaditana|type=mRNA|length=1855bp|location=Sequence derived from alignment at KK037248.1:93638..95492+ (Nannochloropsis gaditana)
ATGGCTGTTGGAATGAACGACGTGTGATGAAATTCGTGTTCCCCCTTAAT
TGTCTTTGCACTTTGCTTTCTCGCTTGCATCGCTTCTTCGCGCTTAGGAA
GTCTTCGAAGCCCATCTATCACAGCGTTTCGTTTCGCTTTTTCAAACGGA
TGTCTGAAGAACATCGATCCGATTCGCGTTGATGAGTGTTTCCGGTCCTC
TACATATCCCTTTCCGCAGGGAGCTGTCAAACTGTGCATATTtgcgggga
gggacagaTATGGCCACTGCCAAGGTCATGAGCAGCCGGCCCACGGGCCC
AACTACTTcaggggaggacaagggcgtcCGGTCGTACTATCTGAGTAAGA
TCGATGAGCTGGAGGTGGTAGTTAGAGAGAGGACACAGAATTTGCAACGA
TTAAAGGCGCAACGGAATGAGTGGAATGCGAAGGTGAGGTTGTTGCGGGA
AGAGCTGCATCACTTGCAAGAGCCGGGCTCCTACGTAGGGGAGGTCGTGA
AAGCCATGGGGAAGACCAAGGTCCTGGTCAAGGTCAATCCTGAAGGAAAA
TACGTGGTGGATCTGGACAAGGATGTGGACATTACCAAGTGCACGCCCAA
CACCCGCGTCGCGCTGCGCAACGATTCGTACACACTCCACAAGATCCTCC
CCACCAAAGTCGACCCGCTGGTCTCCCTtatgaaggtggaggcggtgcca
GACTCTACCTACGACATGATTGGTGGGCTGGACAAGCAGGTCCGCGAAAT
CAAGGAGGTCATTGAGCTGCCCATCAAGCATCCGGAGCTGTTCGAGGCTT
TGGGCGTAGCTCAGCCTAAGGGGGTGCTTCTGTACGGGTgcgtgacaagg
aggagagcgggcggggcgTGAACAGAAAAGTAGAGCTACGAAGCCAGGTA
CAGCTGCTATGGCCTTTGGCATGTCTTGTTCTGATTCGCTCGCTGttctg
cccttccccccttctctgtGCACAGCCCACCCGGGACAGGGAAGACTCTG
CTGGCTCGAGCCGTGGCGCACCACACGGACTGCACCTTTATCCGGGTATC
GGGGGCGGAGTTGGTGCAGAAGTATATCGGAGAAGGCTCGCGCATGGTGC
GGGAGCTCTTCGTGATGGCCCGGGAGGCGGCGCCCTCCATCATCTTCATG
GACGAGATCGACTCCATCGGTTCCTCGCGCGTGGATGGAAGCGAGGGTGG
GGACTCGGAGGTACAGCGGACCATGCTTGAGCTCTTGAATCAACTCGACG
GCTTCGAGCCAGCGCAAAATATCAAGGTAGTGATGGCCACGAACCGCATC
GACATCCTGgacgccgccctccttcgccccggGCGCATCGATCGTAAGAT
CGAGTTTCCCCACCCAACCATGGCGTCTCGTCTAGACATTTTGACCATTC
ATAGCCGAAAGATGAATCTCATGCGTGGCATCAATTTGAAGAGCATTGCG
GAGAAGCTGCCGAACGCTTCGGGAGCGGAGTGCAAGGCTGTCTGCACAGA
GGCGGGAATGTTCGCCCTCCGAGAGAGGCGAATCCACGTGACTCAGGAGG
ACTTTGAAATGGCTGTGGCAAAGGTGATGAAGAAGGATAGCGACTCGAAC
ATGTCTATTAGGAAACTCTGGAAGTAAATAAGTCAAACGGAAAGGGTTGG
AAACAAGGAGCACGATTGACCAGAATCGAGGATTACACGCGTCCTGTACT
TGCAAGGCTTATGGCGTGAAATTTCGCTTGCGAAGGAATAAAATGACGAG
CAGGGGACAGGTATAATTTACGAAATCGGTTAATTAAGTAATGTTATAGC
CCACACACTTTGTCACGAGACCGCGAGTAGACTTTGGAAAAAAACATACT
CATCA

Coding sequence (CDS) from alignment at KK037248.1:93638..95492+

>rna8210 ID=rna8210|Name=rna8210|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at KK037248.1:93638..95492+ (Nannochloropsis gaditana)
ATGAGTGTTTCCGGTCCTCTACATATCCCTTTCCGCAGGGAGCTGTCAAA
CTGTGCATATTtgcggggagggacagaTATGGCCACTGCCAAGGTCATGA
GCAGCCGGCCCACGGGCCCAACTACTTcaggggaggacaagggcgtcCGG
TCGTACTATCTGAGTAAGATCGATGAGCTGGAGGTGGTAGTTAGAGAGAG
GACACAGAATTTGCAACGATTAAAGGCGCAACGGAATGAGTGGAATGCGA
AGGTGAGGTTGTTGCGGGAAGAGCTGCATCACTTGCAAGAGCCGGGCTCC
TACGTAGGGGAGGTCGTGAAAGCCATGGGGAAGACCAAGGTCCTGGTCAA
GGTCAATCCTGAAGGAAAATACGTGGTGGATCTGGACAAGGATGTGGACA
TTACCAAGTGCACGCCCAACACCCGCGTCGCGCTGCGCAACGATTCGTAC
ACACTCCACAAGATCCTCCCCACCAAAGTCGACCCGCTGGTCTCCCTtat
gaaggtggaggcggtgccaGACTCTACCTACGACATGATTGGTGGGCTGG
ACAAGCAGGTCCGCGAAATCAAGGAGGTCATTGAGCTGCCCATCAAGCAT
CCGGAGCTGTTCGAGGCTTTGGGCGTAGCTCAGCCTAAGGGGGTGCTTCT
GTACGGCCCACCCGGGACAGGGAAGACTCTGCTGGCTCGAGCCGTGGCGC
ACCACACGGACTGCACCTTTATCCGGGTATCGGGGGCGGAGTTGGTGCAG
AAGTATATCGGAGAAGGCTCGCGCATGGTGCGGGAGCTCTTCGTGATGGC
CCGGGAGGCGGCGCCCTCCATCATCTTCATGGACGAGATCGACTCCATCG
GTTCCTCGCGCGTGGATGGAAGCGAGGGTGGGGACTCGGAGGTACAGCGG
ACCATGCTTGAGCTCTTGAATCAACTCGACGGCTTCGAGCCAGCGCAAAA
TATCAAGGTAGTGATGGCCACGAACCGCATCGACATCCTGgacgccgccc
tccttcgccccggGCGCATCGATCGTAAGATCGAGTTTCCCCACCCAACC
ATGGCGTCTCGTCTAGACATTTTGACCATTCATAGCCGAAAGATGAATCT
CATGCGTGGCATCAATTTGAAGAGCATTGCGGAGAAGCTGCCGAACGCTT
CGGGAGCGGAGTGCAAGGCTGTCTGCACAGAGGCGGGAATGTTCGCCCTC
CGAGAGAGGCGAATCCACGTGACTCAGGAGGACTTTGAAATGGCTGTGGC
AAAGGTGATGAAGAAGGATAGCGACTCGAACATGTCTATTAGGAAACTCT
GGAAGTAAATGAGTGTTTCCGGTCCTCTACATATCCCTTTCCGCAGGGAG
CTGTCAAACTGTGCATATTtgcggggagggacagaTATGGCCACTGCCAA
GGTCATGAGCAGCCGGCCCACGGGCCCAACTACTTcaggggaggacaagg
gcgtcCGGTCGTACTATCTGAGTAAGATCGATGAGCTGGAGGTGGTAGTT
AGAGAGAGGACACAGAATTTGCAACGATTAAAGGCGCAACGGAATGAGTG
GAATGCGAAGGTGAGGTTGTTGCGGGAAGAGCTGCATCACTTGCAAGAGC
CGGGCTCCTACGTAGGGGAGGTCGTGAAAGCCATGGGGAAGACCAAGGTC
CTGGTCAAGGTCAATCCTGAAGGAAAATACGTGGTGGATCTGGACAAGGA
TGTGGACATTACCAAGTGCACGCCCAACACCCGCGTCGCGCTGCGCAACG
ATTCGTACACACTCCACAAGATCCTCCCCACCAAAGTCGACCCGCTGGTC
TCCCTtatgaaggtggaggcggtgccaGACTCTACCTACGACATGATTGG
TGGGCTGGACAAGCAGGTCCGCGAAATCAAGGAGGTCATTGAGCTGCCCA
TCAAGCATCCGGAGCTGTTCGAGGCTTTGGGCGTAGCTCAGCCTAAGGGG
GTGCTTCTGTACGGCCCACCCGGGACAGGGAAGACTCTGCTGGCTCGAGC
CGTGGCGCACCACACGGACTGCACCTTTATCCGGGTATCGGGGGCGGAGT
TGGTGCAGAAGTATATCGGAGAAGGCTCGCGCATGGTGCGGGAGCTCTTC
GTGATGGCCCGGGAGGCGGCGCCCTCCATCATCTTCATGGACGAGATCGA
CTCCATCGGTTCCTCGCGCGTGGATGGAAGCGAGGGTGGGGACTCGGAGG
TACAGCGGACCATGCTTGAGCTCTTGAATCAACTCGACGGCTTCGAGCCA
GCGCAAAATATCAAGGTAGTGATGGCCACGAACCGCATCGACATCCTGga
cgccgccctccttcgccccggGCGCATCGATCGTAAGATCGAGTTTCCCC
ACCCAACCATGGCGTCTCGTCTAGACATTTTGACCATTCATAGCCGAAAG
ATGAATCTCATGCGTGGCATCAATTTGAAGAGCATTGCGGAGAAGCTGCC
GAACGCTTCGGGAGCGGAGTGCAAGGCTGTCTGCACAGAGGCGGGAATGT
TCGCCCTCCGAGAGAGGCGAATCCACGTGACTCAGGAGGACTTTGAAATG
GCTGTGGCAAAGGTGATGAAGAAGGATAGCGACTCGAACATGTCTATTAG
GAAACTCTGGAAGTAA

Synonyms

Publications