rna8209, rna8209 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8209
Unique Name	rna8209
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1251
Alignment location	KK037248.1:91458..92854 -

Link to JBrowse

Properties


Property Name	Value
Product	gtp binding protein 3
Orig transcript id	gnl\|cribi\|Naga_100011g22.3489.mrna
Orig protein id	gnl\|cribi\|Naga_100011g22.3489
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:91458..92854 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g22	gene7952	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8209	rna8209-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22489.1	cds8185	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:91458..92854-
coding sequence from alignment at KK037248.1:91458..92854-

mRNA sequence

>rna8209 ID=rna8209|Name=rna8209|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp
TTATGCCACAAATCTTCTGGATCCCAAAATTTACGGATGTATGATCCATG
TACAACAGAGGAGGCCTTAATCAATGACAACTTTATGATATTCGACGCAA
CACGATACAGGACCTTCCCGGCAAGGAGCATCGCCCCTGCTCGCCAAGCC
GGCCAATATCAACGTCAAGAAACATGATCTCCACATTACACACTACAGGA
TCGTTTGCAGTCAGCACTCAGGGATATTTTGCAGGCAGGGTCGTTCCTCA
CAATACCCAGGGGAAGGAGCCTGCATGAAAACGCGCCATTATTTTCACGG
GGAGTCTATCCTTCGCATGCTTGTGGTAGTGCTGACACAGCTGCGAACAG
CTGCGTGGTCGTTGCAACGAGGCATTCTCCTGCCGGCTATACGACCCACA
GTGCGGTCTGTGACTTTCTTGCGTGCGGCCGAGCGCTCGCCTTCTAGTGC
TGCGGAACAAGTTCCAACCCCACCAACCTCTTTAACAGTAAGCCCCCTGC
CTGACGCTCGCTATGCCGGCCACGCAGATTTCGTACAAGCCTTGCAGGGG
CTGAGAGGAGACCCCCTGCAGGCTGAGGGGACCCGTGTGGTGATACATCG
AGGCAACGCCGGGGCTAAGATCATGGTGATTGGAGAAGCTCCCGGCGAGA
CAGAGGACGTGGAAGGAAAACCTTTCGTGGGCCGGGCAGGGAAGCTGCTA
GACGCCATCTTGGCTTCGGTGGGGCTCGACGAGAGCTCTGTCTACATCAC
CAACGTCGTCTTACGGCGCCCGCCCAACAACCGGACCCCTTCGGCCTCCG
AAGTGGCATGGTACCTCCCCTACCTGATGGAAAACGTCCGGCTTGTCGAC
CCACTCATCATCCTCTTGGCAGGAGCCTGTGCCTGCAAGGCCTTGCTCCC
CCTGGAGAAGCAGGGGATCACCCGGATCCGCGGGCAGTGGTTTGAGCGGC
GTTTCGGCACCGAGGGGGGCCTGGATGGGCAAGGCTCCCGTCTGGTCATG
CCCATATTCCACCCTTCGTATCTTCTCCGCAATCCCAGTCGGAAGGTGGA
GGGGCCTAAGTGGTTGACGTGGCAGGATATTCAGGCAGTCAGGCGCCGGT
ACGACGAGCTTGCGGGGGCCGGAGGTGGGGAAGGGGTTTGGGCTCCAGGA
AAGCAAGGAAAGGAGGGATAAAGTGCGTTGTTATCAGGGAAAAGCAAGCA
CGGGGTTAGGGGCAAGAGCGGCTCAGGAGAGACAGGAGATTAGTACATGC
T

protein sequence of rna8209

>rna8209-protein ID=rna8209-protein|Name=rna8209|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MDSHSGHSSPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGED
TVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMD
LTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEA
VIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVA
IVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSD
TAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAG
VGPFSKDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLA
GLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGL
GLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK

mRNA from alignment at KK037248.1:91458..92854-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8209 ID=rna8209|Name=rna8209|organism=Nannochloropsis gaditana|type=mRNA|length=1397bp|location=Sequence derived from alignment at KK037248.1:91458..92854- (Nannochloropsis gaditana)
ATGGATTCGCACAGCGGGCATTCCTCCCCACCTTTCCCGGCGCCCCGCAT
GGCGTCCCTCCGGAAGCTCTACTGCCCTGTCGGGCAGGAGGCACTGGACC
AAGCCATCGTGCTCTGGCTCCCTGGCCCCCGCTCCTTCACCGGCGAAGAC
ACGGTGGAGCTTCACTGCCACGGCAGCCGAGCTGTCGTCCAGGGCGTGAC
AGAGGCCCTACTTGCCCTGGACAAGGGGGGCGAGGCTCGCGTCCGCCTGG
CGGAGCCCGGTGAGTTCACCGAGCGAGCTTTCGCGAATGGGAGGATGGAT
TTGACGGAGGTAGAGGGCCTGGCCGACCTGATCGCGGCTGACACGGCCGC
GCAGCGGAAACAGGCGTTGAAGCAGATGGGCGGGGCCTTGCGTCAGACGT
ACGAGGGGTGGCGGGAGGAGCTCAAAGTGTGCCTGGCCCATACGGAGGCG
GTCATCGACTTCGGCGACGACGAGTTAGACGTGGACGAGGCCGCCTATGA
CGCCATCCGGCCCCGCGTGAGGAGGCTGAGCGAGGAGATGCGGCGGCATC
TGGCGGACGGGGGGCGGGGGGAGGTGATCCGCGCGGGCATACGCGTCGCC
ATCGTGGGCCCGCCCAACGCAGGCAAGAGCACCATGCTCAACACCCTGGC
GCGCAGGCCGGCCGCGATCGTCTCGCCCGCGGCGGGCACTACGCGGGATG
TGGTGGAGGTCCAGTTGGACGTGGGGGGCCTACCCGTACTGGTCAGCGAC
ACGGCGGGCATCCGCGAGGCGGCGCGAGACCCGGTGGAGCAGGAGGGGAT
TCGGCGCGCGCGGGAGGCAGCGGGGCGGGCTCAGCTGACGGTGCTGGTCC
TGGACGCCGCGGAGGTGCTGGGGCAAGAGGCCTTCGCGTCCCTGGCGGGC
GTAGGGCCGTTCTCAAAGGACGCGCCGCCCGAGGACCTGGAGACGGTCCT
GAGAGCGGTGGGGGGGACGCGGGCGCTCTCCTTGTGCTGAACAAGCGGGA
CACGGTGGAGAGCGAACACTTGCTGGAGCAGCTCCGACGTGCGGGGGCCG
GGAAGGGAGGGACATCCACGGCCGCCTACTTGGTCTCCCTGTCCACTGGG
GAAGGGGTGGAGGAGATGCTAGCAGGACTGCAGGCGCGGTTGGAGGAGGT
GTTTGACAAGGATGGGACGGACGACGAGCGCGCGGAAGCCCCTGTCATCA
CCCGTGCGCGGCACCGCGTGCACGTGGAGCGATGCCTGGAGGCGCTGACG
GCGTCCATGGGGGAACAGGGCCTGGGCTTGGATGTGGCCGCTGAGGAGCT
GCGGATCGCCTCCACGGAGCTGGGGCGAATCACGGGGGCGGTGGACGTGG
AGGAGGTGCTGGATGTGATATTCCGAGACTTTTGTATAGGGAAATGA

Coding sequence (CDS) from alignment at KK037248.1:91458..92854-

>rna8209 ID=rna8209|Name=rna8209|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at KK037248.1:91458..92854- (Nannochloropsis gaditana)
CTCCGACGTGCGGGGGCCGGGAAGGGAGGGACATCCACGGCCGCCTACTT
GGTCTCCCTGTCCACTGGGGAAGGGGTGGAGGAGATGCTAGCAGGACTGC
AGGCGCGGTTGGAGGAGGTGTTTGACAAGGATGGGACGGACGACGAGCGC
GCGGAAGCCCCTGTCATCACCCGTGCGCGGCACCGCGTGCACGTGGAGCG
ATGCCTGGAGGCGCTGACGGCGTCCATGGGGGAACAGGGCCTGGGCTTGG
ATGTGGCCGCTGAGGAGCTGCGGATCGCCTCCACGGAGCTGGGGCGAATC
ACGGGGGCGGTGGACGTGGAGGAGGTGCTGGATGTGATATTCCGAGACTT
TTGTATAGGGAAATGAATGGATTCGCACAGCGGGCATTCCTCCCCACCTT
TCCCGGCGCCCCGCATGGCGTCCCTCCGGAAGCTCTACTGCCCTGTCGGG
CAGGAGGCACTGGACCAAGCCATCGTGCTCTGGCTCCCTGGCCCCCGCTC
CTTCACCGGCGAAGACACGGTGGAGCTTCACTGCCACGGCAGCCGAGCTG
TCGTCCAGGGCGTGACAGAGGCCCTACTTGCCCTGGACAAGGGGGGCGAG
GCTCGCGTCCGCCTGGCGGAGCCCGGTGAGTTCACCGAGCGAGCTTTCGC
GAATGGGAGGATGGATTTGACGGAGGTAGAGGGCCTGGCCGACCTGATCG
CGGCTGACACGGCCGCGCAGCGGAAACAGGCGTTGAAGCAGATGGGCGGG
GCCTTGCGTCAGACGTACGAGGGGTGGCGGGAGGAGCTCAAAGTGTGCCT
GGCCCATACGGAGGCGGTCATCGACTTCGGCGACGACGAGTTAGACGTGG
ACGAGGCCGCCTATGACGCCATCCGGCCCCGCGTGAGGAGGCTGAGCGAG
GAGATGCGGCGGCATCTGGCGGACGGGGGGCGGGGGGAGGTGATCCGCGC
GGGCATACGCGTCGCCATCGTGGGCCCGCCCAACGCAGGCAAGAGCACCA
TGCTCAACACCCTGGCGCGCAGGCCGGCCGCGATCGTCTCGCCCGCGGCG
GGCACTACGCGGGATGTGGTGGAGGTCCAGTTGGACGTGGGGGGCCTACC
CGTACTGGTCAGCGACACGGCGGGCATCCGCGAGGCGGCGCGAGACCCGG
TGGAGCAGGAGGGGATTCGGCGCGCGCGGGAGGCAGCGGGGCGGGCTCAG
CTGACGGTGCTGGTCCTGGACGCCGCGGAGGTGCTGGGGCAAGAGGCCTT
CGCGTCCCTGGCGGGCGTAGGGCCGTTCTCAAAGGACGCGCCGCCCGAGG
ACCTGGAGACGGTCCTGAGAGCGCTCCGACGTGCGGGGGCCGGGAAGGGA
GGGACATCCACGGCCGCCTACTTGGTCTCCCTGTCCACTGGGGAAGGGGT
GGAGGAGATGCTAGCAGGACTGCAGGCGCGGTTGGAGGAGGTGTTTGACA
AGGATGGGACGGACGACGAGCGCGCGGAAGCCCCTGTCATCACCCGTGCG
CGGCACCGCGTGCACGTGGAGCGATGCCTGGAGGCGCTGACGGCGTCCAT
GGGGGAACAGGGCCTGGGCTTGGATGTGGCCGCTGAGGAGCTGCGGATCG
CCTCCACGGAGCTGGGGCGAATCACGGGGGCGGTGGACGTGGAGGAGGTG
CTGGATGTGATATTCCGAGACTTTTGTATAGGGAAATGAATGGATTCGCA
CAGCGGGCATTCCTCCCCACCTTTCCCGGCGCCCCGCATGGCGTCCCTCC
GGAAGCTCTACTGCCCTGTCGGGCAGGAGGCACTGGACCAAGCCATCGTG
CTCTGGCTCCCTGGCCCCCGCTCCTTCACCGGCGAAGACACGGTGGAGCT
TCACTGCCACGGCAGCCGAGCTGTCGTCCAGGGCGTGACAGAGGCCCTAC
TTGCCCTGGACAAGGGGGGCGAGGCTCGCGTCCGCCTGGCGGAGCCCGGT
GAGTTCACCGAGCGAGCTTTCGCGAATGGGAGGATGGATTTGACGGAGGT
AGAGGGCCTGGCCGACCTGATCGCGGCTGACACGGCCGCGCAGCGGAAAC
AGGCGTTGAAGCAGATGGGCGGGGCCTTGCGTCAGACGTACGAGGGGTGG
CGGGAGGAGCTCAAAGTGTGCCTGGCCCATACGGAGGCGGTCATCGACTT
CGGCGACGACGAGTTAGACGTGGACGAGGCCGCCTATGACGCCATCCGGC
CCCGCGTGAGGAGGCTGAGCGAGGAGATGCGGCGGCATCTGGCGGACGGG
GGGCGGGGGGAGGTGATCCGCGCGGGCATACGCGTCGCCATCGTGGGCCC
GCCCAACGCAGGCAAGAGCACCATGCTCAACACCCTGGCGCGCAGGCCGG
CCGCGATCGTCTCGCCCGCGGCGGGCACTACGCGGGATGTGGTGGAGGTC
CAGTTGGACGTGGGGGGCCTACCCGTACTGGTCAGCGACACGGCGGGCAT
CCGCGAGGCGGCGCGAGACCCGGTGGAGCAGGAGGGGATTCGGCGCGCGC
GGGAGGCAGCGGGGCGGGCTCAGCTGACGGTGCTGGTCCTGGACGCCGCG
GAGGTGCTGGGGCAAGAGGCCTTCGCGTCCCTGGCGGGCGTAGGGCCGTT
CTCAAAGGACGCGCCGCCCGAGGACCTGGAGACGGTCCTGAGAGCG

Synonyms

Publications