EWM22489.1, cds8185 (CDS) Nannochloropsis gaditana

Overview
NameEWM22489.1
Unique Namecds8185
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:91898..92854 -
Alignment locationKK037248.1:91458..91823 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22489.1
Productgtp binding protein 3
Orig transcript idgnl|cribi|Naga_100011g22.3489.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:91898..92854 -
KK037248.1supercontigKK037248.1:91458..91823 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006400tRNA modification
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR004520GTPase_MnmE
IPR005225Small_GTP-bd_dom
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
IPR018948GTP-bd_TrmE_N
IPR025867GTPase_MnmE_C_dom
IPR027266TrmE/GcvT_dom1
IPR027368MnmE_dom2
IPR003593AAA+_ATPase
Homology
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|585102995|gb|EWM22489.1| (gtp binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 0
Query:    1 MDSHSGHSSPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFSKDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            MDSHSGHSSPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFSKDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK
Sbjct:    1 MDSHSGHSSPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFSKDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|695396868|ref|XP_009521595.1| (hypothetical protein PHYSODRAFT_479901 [Phytophthora sojae] >gi|348686492|gb|EGZ26307.1| hypothetical protein PHYSODRAFT_479901 [Phytophthora sojae])

HSP 1 Score: 384.8 bits (987), Expect = 1.299e-126
Identity = 214/434 (49.31%), Postives = 288/434 (66.36%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFS--KDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P+SFTGED VELH HGS AVV GV EAL  +        R AE GEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR  L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAI+GPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAGIRE   D VE+EG+ RA++ A  A + VL++D AE+L  + + S    G  +    +   D + + R +      +        ++S + G+ ++  +  L A ++E  +   +    A   +ITR RHR ++  CL  L   + +     ++AAE+LR A   +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   74 STALPEPRVAALRKLYHPKTKEHLDDALVLRFPHPKSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRGQALRQLSGDVGEIYEGWRNSLVRCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRVLADSIRGHLADGRRGEILRSGVQVAILGPPNAGKSSLLNVLARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGIRE-TEDLVEKEGVLRAQQCASDADICVLMMDNAELLHNDEYQSYLKEGAIAVLNKSDQFDEDEIGRVISTFDTEQ---RDQLLVISCAEGDNIDVFVDNLAAAVKEKLEM--SSGASANGALITRERHRQNLVECLSCLERFLADPYQS-EIAAEDLRRAVMAIGRILGRIDVEDVLDVLFADFCIGK 495          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|397643422|gb|EJK75853.1| (hypothetical protein THAOC_02405 [Thalassiosira oceanica])

HSP 1 Score: 387.111 bits (993), Expect = 5.490e-126
Identity = 235/474 (49.58%), Postives = 299/474 (63.08%), Query Frame = 0
Query:    5 SGHSSPPFPAPRMASLRKLYCPVG--------QEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDE-LDVDEAAYDA------------IRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQ---EGIRRAREAAGRAQLTVLVLDAA-EVLGQEAFASLA---GVGPFSKDAPPEDLETVL--RALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDER-----AEAPVITRARHRVHVERCLEALT--ASMGEQG-LGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            +G   P  P PRMASLR LY P+         ++ LD A+VL  PGPRSFTGED VELHCHGSRAV  GV +AL +LD      VR A+PGEFT+RA+ NG++ L EVE LADLI ADT+ QRKQAL+Q  G L + Y GWR+EL   LAH EAVIDFGDDE L  +++++D+            +RPR+  L E M RHL D  RGE++R G+R+AIVG PNAGKS++LN LA R AAIVS   GTTRDVVEV LD+ G+   + DTAG+RE   D V++   EG++RAR AA  A L V V+D + +  G EA   L    G    ++ +P  +L  VL  R L        G  +  + +S +T +GV+  LA L  R   +  ++G           E  VITRARHR HVE   +AL     +  QG + LD+AAEELR+AS+ELGR+TGA+DVE+VLDV+F DFCIGK
Sbjct:  144 AGAEPPKLPTPRMASLRILYDPLSSSDHLNRMRDPLDSALVLIFPGPRSFTGEDIVELHCHGSRAVTSGVLKALSSLDS-----VRPADPGEFTQRAYGNGKLGLVEVEALADLIVADTSLQRKQALQQFDGRLSRLYLGWRKELIKGLAHAEAVIDFGDDEALGEEDSSFDSSENDGGMSVWADVRPRISSLREAMDRHLEDASRGELLRDGLRIAIVGRPNAGKSSLLNLLAGRDAAIVSSTPGTTRDVVEVVLDLDGVRCSLLDTAGVREEIEDGVDEIEIEGMKRARLAAQEAHLIVGVVDCSDQKRGLEAVQELIRADGHSDSARSSPHNNLLYVLNKRDLFEGEMEPCGVDSETFAISCTTNQGVDIFLAALSKRALAMISQEGDSSGDLSVVGTEGAVITRARHRRHVEAASDALQRFEVLSSQGYMALDMAAEELRLASSELGRVTGAIDVEDVLDVLFADFCIGK 612          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|675174403|ref|XP_008896086.1| (tRNA modification GTPase TrmE, variant [Phytophthora parasitica INRA-310] >gi|568103753|gb|ETN18410.1| tRNA modification GTPase TrmE, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 381.333 bits (978), Expect = 3.783e-125
Identity = 214/435 (49.20%), Postives = 288/435 (66.21%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AEPGEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   74 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEPGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGS--SNGTLITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|675174401|ref|XP_008896085.1| (tRNA modification GTPase TrmE [Phytophthora parasitica INRA-310] >gi|568103752|gb|ETN18409.1| tRNA modification GTPase TrmE [Phytophthora parasitica INRA-310])

HSP 1 Score: 380.948 bits (977), Expect = 1.002e-124
Identity = 214/435 (49.20%), Postives = 288/435 (66.21%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AEPGEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:  100 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEPGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGS--SNGTLITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 523          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|567950777|gb|ETK76485.1| (tRNA modification GTPase TrmE [Phytophthora parasitica])

HSP 1 Score: 378.252 bits (970), Expect = 5.108e-124
Identity = 213/435 (48.97%), Postives = 287/435 (65.98%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AE GEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   74 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHNGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGG--SSNGALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|568038861|gb|ETM36376.1| (tRNA modification GTPase TrmE [Phytophthora parasitica])

HSP 1 Score: 378.637 bits (971), Expect = 7.764e-124
Identity = 213/435 (48.97%), Postives = 287/435 (65.98%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AE GEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:  100 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHNGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGS--SNGALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 523          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|566013321|gb|ETI36232.1| (tRNA modification GTPase TrmE, variant [Phytophthora parasitica P1569] >gi|567979444|gb|ETL29923.1| tRNA modification GTPase TrmE [Phytophthora parasitica] >gi|570940827|gb|ETP06084.1| tRNA modification GTPase TrmE, variant [Phytophthora parasitica CJ01A1] >gi|570971073|gb|ETP34192.1| tRNA modification GTPase TrmE [Phytophthora parasitica P10297] >gi|570971074|gb|ETP34193.1| tRNA modification GTPase TrmE, variant [Phytophthora parasitica P10297])

HSP 1 Score: 377.867 bits (969), Expect = 7.797e-124
Identity = 213/435 (48.97%), Postives = 287/435 (65.98%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AE GEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   74 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGS--SNGALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|655969911|ref|WP_029012503.1| (tRNA modification GTPase [Niveispirillum irakense])

HSP 1 Score: 375.555 bits (963), Expect = 1.051e-123
Identity = 221/440 (50.23%), Postives = 285/440 (64.77%), Query Frame = 0
Query:    1 MDSHSGHSSPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFSKDAPPEDLETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            + + +GH     P PR A L  L  P   E  D+A++LW PGP SFTGED  ELH HG RAV+Q  T AL+ L       +R+AEPGEF+ RAF NG++DLTE E +ADL+ A+TAAQR+QAL+QM GAL Q Y+GWR  L   LAH EA IDF ++  D+     DA+RP V +L +E+  HLAD GRGE +R GI +AI+G PNAGKS+++N +ARR  AIVS  AGTTRDV+EVQLD+GG PVL++DTAG+REAA D VE EGIRRA + AG+A L +LV D    L     A+LA            D   V+    + GA    +  +   VS  TG+G+ ++LA LQA + + +   G       AP +TRARHR  +E CL  L  ++  Q    ++AAE++R+A+  LGRITG VDVEE+LDVIFRDFCIGK
Sbjct:   32 LQALAGH----LPLPRQARLAVLTDPSTGEVFDKALLLWFPGPASFTGEDVAELHLHGGRAVLQAATAALVGLG------LRVAEPGEFSRRAFENGKLDLTEAEAIADLVDAETAAQRRQALRQMEGALGQLYDGWRHRLTRALAHLEADIDFPEE--DLPGGLSDAVRPVVLKLVDELHHHLADQGRGERLRDGISIAILGAPNAGKSSLMNAIARRDVAIVSNQAGTTRDVIEVQLDLGGYPVLLADTAGLREAA-DQVESEGIRRAMDRAGKADLKLLVFDG---LSDPDAATLA--------LADGDALLVMNKADQPGARPPLSGPSVLQVSARTGDGIPDLLAALQAEVAKRYAPSG-------APALTRARHRSALEDCLSHLQRAL--QAPLPELAAEDVRLAARALGRITGRVDVEELLDVIFRDFCIGK 438          
BLAST of EWM22489.1 vs. NCBI_GenBank
Match: gi|570940826|gb|ETP06083.1| (tRNA modification GTPase TrmE [Phytophthora parasitica CJ01A1])

HSP 1 Score: 378.252 bits (970), Expect = 1.120e-123
Identity = 213/435 (48.97%), Postives = 287/435 (65.98%), Query Frame = 0
Query:    9 SPPFPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLD--AAEVLGQEAFASLAGVGPFSKDAPPEDL-ETVLRALRRAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
            S   P PR+A+LRKLY P  +E LD A+VL  P P SFTGED VELH HGS AVV GV EAL  +        R AE GEFTERAF N ++DL +VEGLADL++A+T AQR QAL+Q+ G + + YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   RVR L++ +R HLADG RGE++R+G++VAIVGPPNAGKS++LN LARRPAAIVS  AGTTRDVV+V L++ G PV+VSDTAG+RE   D +E+EG+ RA++ A  A + V+++D   A  L    + S    G F+     + + E+ + ++    A K        +VS + G+ V+  +  L   ++E  +        +   +ITR RHR ++  CL  L   + +     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:  101 STALPKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFAVLNKSDQVDESQIASVLETFASK--QRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGG--SSNGALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 524          
The following BLAST results are available for this feature:
BLAST of EWM22489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102995|gb|EWM22489.1|0.000e+0100.00gtp binding protein 3 [Nannochloropsis gaditana][more]
gi|695396868|ref|XP_009521595.1|1.299e-12649.31hypothetical protein PHYSODRAFT_479901 [Phytophtho... [more]
gi|397643422|gb|EJK75853.1|5.490e-12649.58hypothetical protein THAOC_02405 [Thalassiosira oc... [more]
gi|675174403|ref|XP_008896086.1|3.783e-12549.20tRNA modification GTPase TrmE, variant [Phytophtho... [more]
gi|675174401|ref|XP_008896085.1|1.002e-12449.20tRNA modification GTPase TrmE [Phytophthora parasi... [more]
gi|567950777|gb|ETK76485.1|5.108e-12448.97tRNA modification GTPase TrmE [Phytophthora parasi... [more]
gi|568038861|gb|ETM36376.1|7.764e-12448.97tRNA modification GTPase TrmE [Phytophthora parasi... [more]
gi|566013321|gb|ETI36232.1|7.797e-12448.97tRNA modification GTPase TrmE, variant [Phytophtho... [more]
gi|655969911|ref|WP_029012503.1|1.051e-12350.23tRNA modification GTPase [Niveispirillum irakense][more]
gi|570940826|gb|ETP06083.1|1.120e-12348.97tRNA modification GTPase TrmE [Phytophthora parasi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8209rna8209Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications