rna8208, rna8208 (mRNA) Nannochloropsis gaditana

Overview
Namerna8208
Unique Namerna8208
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationKK037248.1:90040..91406 +

Link to JBrowse

Properties
Property NameValue
Productphage spo1 dna polymerase-related protein
Orig transcript idgnl|cribi|Naga_100011g21.3483.mrna
Orig protein idgnl|cribi|Naga_100011g21.3483
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:90040..91406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g21gene7951Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8208rna8208-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22483.1cds8184Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8208 ID=rna8208|Name=rna8208|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGGTGACGTGTAGCTCTGCAATAGTATCTGCTCGCACAATCATCGTTCC
CAAAGTAATGCAGCACACACTTTCCGGGAGAGCCTCGGAGGAGCTCAGAG
GAGACCATATACTTATGCTTGGATTTCACGCTGTTTCTCAGGAAATGCTG
TGCTGGATGAAGATTGAGTGTAATTCTTCAATTGCCCCTTTTGTACTCCC
TATCTGA
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protein sequence of rna8208

>rna8208-protein ID=rna8208-protein|Name=rna8208|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MKTRHYFHGESILRMLVVVLTQLRTAAWSLQRGILLPAIRPTVRSVTFLR
AAERSPSSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQA
EGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVG
LDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAG
ACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYL
LRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGGEGVWAPGKQGKEG
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mRNA from alignment at KK037248.1:90040..91406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8208 ID=rna8208|Name=rna8208|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at KK037248.1:90040..91406+ (Nannochloropsis gaditana)
TTATGCCACAAATCTTCTGGATCCCAAAATTTACGGATGTATGATCCATG
TACAACAGAGGAGGCCTTAATCAATGACAACTTTATGATATTCGACGCAA
CACGATACAGGACCTTCCCGGCAAGGAGCATCGCCCCTGCTCGCCAAGCC
GGCCAATATCAACGTCAAGAAACATGATCTCCACATTACACACTACAGGA
TCGTTTGCAGTCAGCACTCAGGGATATTTTGCAGGCAGGGTCGTTCCTCA
CAATACCCAGGGGAAGGAGCCTGCATGAAAACGCGCGTAAGTTGCTGGAA
AACCTCACCTTGTATACTGATGCCATTAACCACCCGCCCTGAGTTCCTTC
CACTGTGTGACTCCTATTGCTCTATTGACATtatttcccccttctctttc
agcaTTATTTTCACGGGGAGTCTATCCTTCGCATGCTTGTGGTAGTGCTG
ACACAGCTGCGAACAGCTGCGTGGTCGTTGCAACGAGGCATTCTCCTGCC
GGCTATACGACCCACAGTGCGGTCTGTGACTTTCTTGCGTGCGGCCGAGC
GCTCGCCTTCTAGTGCTGCGGAACAAGTTCCAACCCCACCAACCTCTTTA
ACAGTAAGCCCCCTGCCTGACGCTCGCTATGCCGGCCACGCAGATTTCGT
ACAAGCCTTGCAGGGGCTGAGAGGAGACCCCCTGCAGGCTGAGGGGACCC
GTGTGGTGATACATCGAGGCAACGCCGGGGCTAAGATCATGGTGATTGGA
GAAGCTCCCGGCGAGAcagaggacgtggaaggaaaaCCTTTCGTGGGCCG
GGCAGGGAAGCTGCTAGACGCCATCTTGGCTTCGGTGGGGCTCGACGAGA
GCTCTGTCTACATCACCAACGTCGTCTTACGGCGCCCGCCCAACAACCGG
ACCCCTTCGGCCTCCGAAGTGGCATGGTACCTCCCCTACCTGATGGAAAA
CGTCCGGCTTGTCGACCCACTCATCATCCTCTTGGCAGGAGCCTGTGCCT
GCAAGGCCTTGCTCCCcctggagaagcaggggaTCACCCGGATCCGCGGG
CAGTGGTTTGAGCGGCGTTTCGGCACCGAGGGGGGCCTGGATGGGCAAGG
CTCCCGTCTGGTCATGCCCATATTCCACCCTTCGTATCTTCTCCGCAATC
CCAGtcggaaggtggaggggccTAAGTGGTTGACGTGGCAGGATATTCAG
GCAGTCAGGCGCCGGTACGACGAGCTTGCGGGGgccggaggtggggaagg
ggtTTGGGCTCcaggaaagcaaggaaaggagggataaAGTGCGTTGTTAT
CAGGGAAAAGCAAGCACGGGGTTAGGGGCAAGAGCGGCTCAGGAGAGACA
GGAGATTAGTACATGCT
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Coding sequence (CDS) from alignment at KK037248.1:90040..91406+

>rna8208 ID=rna8208|Name=rna8208|organism=Nannochloropsis gaditana|type=CDS|length=1794bp|location=Sequence derived from alignment at KK037248.1:90040..91406+ (Nannochloropsis gaditana)
ATGAAAACGCGCcaTTATTTTCACGGGGAGTCTATCCTTCGCATGCTTGT
GGTAGTGCTGACACAGCTGCGAACAGCTGCGTGGTCGTTGCAACGAGGCA
TTCTCCTGCCGGCTATACGACCCACAGTGCGGTCTGTGACTTTCTTGCGT
GCGGCCGAGCGCTCGCCTTCTAGTGCTGCGGAACAAGTTCCAACCCCACC
AACCTCTTTAACAGTAAGCCCCCTGCCTGACGCTCGCTATGCCGGCCACG
CAGATTTCGTACAAGCCTTGCAGGGGCTGAGAGGAGACCCCCTGCAGGCT
GAGGGGACCCGTGTGGTGATACATCGAGGCAACGCCGGGGCTAAGATCAT
GGTGATTGGAGAAGCTCCCGGCGAGAcagaggacgtggaaggaaaaCCTT
TCGTGGGCCGGGCAGGGAAGCTGCTAGACGCCATCTTGGCTTCGGTGGGG
CTCGACGAGAGCTCTGTCTACATCACCAACGTCGTCTTACGGCGCCCGCC
CAACAACCGGACCCCTTCGGCCTCCGAAGTGGCATGGTACCTCCCCTACC
TGATGGAAAACGTCCGGCTTGTCGACCCACTCATCATCCTCTTGGCAGGA
GCCTGTGCCTGCAAGGCCTTGCTCCCcctggagaagcaggggaTCACCCG
GATCCGCGGGCAGTGGTTTGAGCGGCGTTTCGGCACCGAGGGGGGCCTGG
ATGGGCAAGGCTCCCGTCTGGTCATGCCCATATTCCACCCTTCGTATCTT
CTCCGCAATCCCAGtcggaaggtggaggggccTAAGTGGTTGACGTGGCA
GGATATTCAGGCAGTCAGGCGCCGGTACGACGAGCTTGCGGGGgccggag
gtggggaaggggtTTGGGCTCcaggaaagcaaggaaaggagggataaATG
AAAACGCGCcaTTATTTTCACGGGGAGTCTATCCTTCGCATGCTTGTGGT
AGTGCTGACACAGCTGCGAACAGCTGCGTGGTCGTTGCAACGAGGCATTC
TCCTGCCGGCTATACGACCCACAGTGCGGTCTGTGACTTTCTTGCGTGCG
GCCGAGCGCTCGCCTTCTAGTGCTGCGGAACAAGTTCCAACCCCACCAAC
CTCTTTAACAGTAAGCCCCCTGCCTGACGCTCGCTATGCCGGCCACGCAG
ATTTCGTACAAGCCTTGCAGGGGCTGAGAGGAGACCCCCTGCAGGCTGAG
GGGACCCGTGTGGTGATACATCGAGGCAACGCCGGGGCTAAGATCATGGT
GATTGGAGAAGCTCCCGGCGAGAcagaggacgtggaaggaaaaCCTTTCG
TGGGCCGGGCAGGGAAGCTGCTAGACGCCATCTTGGCTTCGGTGGGGCTC
GACGAGAGCTCTGTCTACATCACCAACGTCGTCTTACGGCGCCCGCCCAA
CAACCGGACCCCTTCGGCCTCCGAAGTGGCATGGTACCTCCCCTACCTGA
TGGAAAACGTCCGGCTTGTCGACCCACTCATCATCCTCTTGGCAGGAGCC
TGTGCCTGCAAGGCCTTGCTCCCcctggagaagcaggggaTCACCCGGAT
CCGCGGGCAGTGGTTTGAGCGGCGTTTCGGCACCGAGGGGGGCCTGGATG
GGCAAGGCTCCCGTCTGGTCATGCCCATATTCCACCCTTCGTATCTTCTC
CGCAATCCCAGtcggaaggtggaggggccTAAGTGGTTGACGTGGCAGGA
TATTCAGGCAGTCAGGCGCCGGTACGACGAGCTTGCGGGGgccggaggtg
gggaaggggtTTGGGCTCcaggaaagcaaggaaaggagggataa
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Synonyms
Publications