EWM22483.1, cds8184 (CDS) Nannochloropsis gaditana

Overview
NameEWM22483.1
Unique Namecds8184
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:90314..90325 +
Alignment locationKK037248.1:90442..91326 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22483.1
Productphage spo1 dna polymerase-related protein
Orig transcript idgnl|cribi|Naga_100011g21.3483.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:90314..90325 +
KK037248.1supercontigKK037248.1:90442..91326 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005273Ura-DNA_glyco_family4_dom
IPR005122Uracil-DNA_glycosylase-like
Homology
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|585102989|gb|EWM22483.1| (phage spo1 dna polymerase-related protein [Nannochloropsis gaditana])

HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query:    1 MKTRHYFHGESILRMLVVVLTQLRTAAWSLQRGILLPAIRPTVRSVTFLRAAERSPSSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGGEGVWAPGKQGKEG 298
            MKTRHYFHGESILRMLVVVLTQLRTAAWSLQRGILLPAIRPTVRSVTFLRAAERSPSSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGGEGVWAPGKQGKEG
Sbjct:    1 MKTRHYFHGESILRMLVVVLTQLRTAAWSLQRGILLPAIRPTVRSVTFLRAAERSPSSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGGEGVWAPGKQGKEG 298          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|518332243|ref|WP_019502450.1| (uracil-DNA glycosylase [Pseudanabaena sp. PCC 6802])

HSP 1 Score: 217.624 bits (553), Expect = 8.407e-67
Identity = 123/238 (51.68%), Postives = 148/238 (62.18%), Query Frame = 0
Query:   49 LRAAERSPSSAAEQVPTPPTS-------LTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDEL 279
            +  ++R   S  +  P PP S       + V P  +A YA            +  PL A    VV+ RGN  AKIM+IGEAPG+ ED +G PFVG+AG+LLD ILASVGLDES+VYI N+   RPP NR P+  EVA   PYL+E +RLVDP IILL GA A KA+   +K+GITRIRG+W E           QG RL MPIFHP+YLLRN SR+   PKWL WQDIQ V+ RY EL
Sbjct:    1 MNQSDREQMSLFDLEPVPPKSEAKPTVPVAVPPASNAIYANLDALRAEAMACQKCPLAATRINVVVERGNRNAKIMIIGEAPGQNEDEQGLPFVGKAGQLLDKILASVGLDESNVYICNINKCRPPGNRVPTDEEVAACKPYLLEQIRLVDPKIILLTGATAVKAITG-DKRGITRIRGEWME----------WQG-RLAMPIFHPAYLLRNASREEGSPKWLMWQDIQRVKARYLEL 226          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|1176234598|gb|OQY43543.1| (hypothetical protein B6242_14430 [Anaerolineaceae bacterium 4572_78])

HSP 1 Score: 216.468 bits (550), Expect = 9.381e-67
Identity = 109/207 (52.66%), Postives = 138/207 (66.67%), Query Frame = 0
Query:   80 YAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGG 285
            Y  H   V+ L+ L  DPL++ G+ +VI+RG   A +M+IGEAPG  ED  GKPFVGR+G+LLD IL +V  + E+ +YITN + RRPPNNR P   E+ +Y P+L E +RLVDP IILLAG  A   +L  EK+GIT++RGQW E           QG R VMPIFHP+YLLRNP +    PK L W+DI+AVR +YDEL   G G
Sbjct:   12 YPTHQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAGKYAMLTILQ-EKRGITKVRGQWVE-----------QGGRWVMPIFHPAYLLRNPRKTPGSPKALMWEDIRAVRAKYDELRNDGDG 206          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|515380047|ref|WP_016875285.1| (uracil-DNA glycosylase [Chlorogloeopsis fritschii])

HSP 1 Score: 215.698 bits (548), Expect = 3.862e-66
Identity = 122/233 (52.36%), Postives = 142/233 (60.94%), Query Frame = 0
Query:   49 LRAAERSPSSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELA 280
            L   E S S+  E +PT     +  P+P   YA   +  Q         L    T  V+ RGN  AKIMVIGEAPG+ ED  G PFVGRAG+LL+ ILASV LD E  VYI N+   RPPNNR P+  E+    PYL+E +RLV P IILL GA A K LL  +K+GIT+IRG W E     EG        L MPIFHPSYLLRNPSR+V  PKWL WQDIQAVR +YDE+ 
Sbjct:    7 LSLFEESNSNQKELIPTD----SKIPIPSGTYANMTELAQHCNQCHRCELGKTRTHAVVGRGNLEAKIMVIGEAPGQNEDETGLPFVGRAGQLLEKILASVKLDTEKDVYICNINKCRPPNNRVPTNEEMEACKPYLLEQIRLVAPKIILLTGATAVKGLLG-DKRGITKIRGTWME----WEG-------HLCMPIFHPSYLLRNPSREVNSPKWLMWQDIQAVRAKYDEIC 223          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|502957771|ref|WP_013192747.1| (uracil-DNA glycosylase [Trichormus azollae] >gi|298234601|gb|ADI65737.1| phage SPO1 DNA polymerase-related protein ['Nostoc azollae' 0708])

HSP 1 Score: 214.927 bits (546), Expect = 7.994e-66
Identity = 118/225 (52.44%), Postives = 142/225 (63.11%), Query Frame = 0
Query:   58 SAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAG 281
            S+  Q    PT   + P+P   YA   +  Q     R   L    T  V+ RGN  AKIM+IGEAPG++ED  G PFVG++G+LL+ ILASV L  E  VYI N+   RPP NR P+A E+A   PYL+E +RLVDP IILL GA A K +    KQGIT+IRGQW E    +EG       RL MPIFHPSYLLRNPSR+   PKWL WQDIQAV+ +YDE+ G
Sbjct:   13 SSFNQKDLIPTDAKI-PIPSGTYANMPELAQHCNNCRRCGLGDNRTHAVVGRGNLQAKIMIIGEAPGQSEDETGLPFVGKSGQLLEKILASVNLSTEEDVYIGNINKCRPPENRVPTAEEMAACKPYLLEQIRLVDPKIILLTGATAVKGITG-SKQGITKIRGQWLE----SEG-------RLCMPIFHPSYLLRNPSREKGSPKWLMWQDIQAVKAKYDEIKG 224          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|1011384597|ref|WP_062297347.1| (DNA polymerase [Nostoc piscinale] >gi|930353364|gb|ALF55809.1| DNA polymerase [Nostoc piscinale CENA21])

HSP 1 Score: 213.772 bits (543), Expect = 1.969e-65
Identity = 116/216 (53.70%), Postives = 140/216 (64.81%), Query Frame = 0
Query:   67 PTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAG 281
            PT   + P+P   Y    +  Q     +   L    T  V+ RGN  A IM++GEAPG++ED  G PFVGR+G+LL+ ILASV L  E  VYI N+   RPPNNR P+ +E+A  +PYL+E +RLVDP IILL GA A K L   EKQGIT+IRGQW E     EG       RL MPIFHPSYLLRNPS++   PKWL WQDIQAVR +YDE+AG
Sbjct:   22 PTDAKI-PIPAGTYTNMTELAQHCNQCQRCELGQTRTHAVVGRGNLNAPIMIVGEAPGQSEDETGLPFVGRSGQLLEKILASVNLSTEQDVYIGNINKCRPPNNRVPTPNEMAACIPYLLEQIRLVDPQIILLTGATAVKGLTG-EKQGITKIRGQWIE----WEG-------RLCMPIFHPSYLLRNPSKEKGSPKWLMWQDIQAVRAKYDEIAG 224          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|737171863|ref|WP_035158067.1| (DNA polymerase [Calothrix sp. 336/3] >gi|817929701|gb|AKG24189.1| DNA polymerase [Calothrix sp. 336/3])

HSP 1 Score: 212.616 bits (540), Expect = 8.029e-65
Identity = 114/207 (55.07%), Postives = 137/207 (66.18%), Query Frame = 0
Query:   74 PLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDEL 279
            P+P   YA   +  Q  Q  +   L      VV+ +GN  A IM+IGEAPG+ ED +GKPFVGR+G+LLD ILASV LD E  VYI N+   RPP+NR P+  EVA   PYL+E +RLVDP IILL GA A K+L   +K+GIT+IRGQW E     EG       RL MPIFHPSYLLRNPS++   PKWL WQDIQ VR +YDE+
Sbjct:   35 PIPAGTYADITELTQYCQNCQRCGLATSRINVVVGKGNPQALIMIIGEAPGQHEDEQGKPFVGRSGQLLDKILASVNLDTEKDVYICNINKCRPPDNRVPTNEEVAACRPYLLEQIRLVDPKIILLTGATAVKSLTG-DKRGITKIRGQWME----WEG-------RLCMPIFHPSYLLRNPSKETGSPKWLMWQDIQLVRGKYDEI 229          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|1197737097|ref|WP_086687175.1| (uracil-DNA glycosylase [Nostoc sp. T09] >gi|1196012185|gb|OUL34155.1| uracil-DNA glycosylase [Nostoc sp. T09])

HSP 1 Score: 210.305 bits (534), Expect = 3.505e-64
Identity = 118/224 (52.68%), Postives = 141/224 (62.95%), Query Frame = 0
Query:   57 SSAAEQVPTPPTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDEL 279
             S+  Q    PT   + P+P   Y+   +  Q         L    T  V+ RGN  A IMV+GEAPG+ ED  G PFVGR+G+LL+ ILASV L  E+ VYI N+   RPP NR P+  E+A  LPYL+E +RLVDP IILL GA A K L   +K+GIT+IRGQW E           QG RL MPIFHPSYLLRNPSR+V GPKWL WQDIQAVR +YDE+
Sbjct:   12 DSSFNQRDLIPTDAKI-PIPANTYSDMTELAQHCNQCHRCGLGDNRTHAVVGRGNLKAPIMVVGEAPGQNEDETGLPFVGRSGQLLEKILASVSLSTENDVYIANINKCRPPENRVPTTEEMAACLPYLLEQIRLVDPKIILLTGATAVKGLTG-DKRGITKIRGQWIE----------WQG-RLCMPIFHPSYLLRNPSREVGGPKWLMWQDIQAVRAKYDEI 222          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|654354261|ref|WP_027846911.1| (DNA polymerase [Mastigocoleus testarum] >gi|959131659|gb|KST66841.1| DNA polymerase [Mastigocoleus testarum BC008] >gi|959135180|gb|KST70179.1| DNA polymerase [Mastigocoleus testarum BC008])

HSP 1 Score: 210.69 bits (535), Expect = 4.228e-64
Identity = 115/214 (53.74%), Postives = 136/214 (63.55%), Query Frame = 0
Query:   67 PTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDEL 279
            PTS  + P+P   YA   +  +         L +     VI RGN  A I V+GEAPG+ ED  G PFVGRAG+LLD ILA+V LD E  VYI N+   RPPNNRTP+  E+A   PY++E +RLVDP IILL GA A K L   EK+GIT+IRG W E     EG       RL MPIFHPSYLLRNPSR+   PKWL WQDI+AVR +YDE+
Sbjct:   22 PTSAKI-PIPSGTYANMTEITEHCNSCHRCSLGSTRKHAVIGRGNQKALIAVVGEAPGQNEDETGLPFVGRAGQLLDKILAAVRLDSEKDVYICNIAKCRPPNNRTPTTEEIAACKPYILEQIRLVDPKIILLTGATAVKGLTA-EKRGITKIRGTWME----WEG-------RLCMPIFHPSYLLRNPSREKGSPKWLMWQDIRAVRAKYDEI 222          
BLAST of EWM22483.1 vs. NCBI_GenBank
Match: gi|1210183532|dbj|BAZ02593.1| (phage SPO1 DNA polymerase-like protein [Tolypothrix tenuis PCC 7101] >gi|1210254484|dbj|BAZ73486.1| phage SPO1 DNA polymerase-like protein [Aulosira laxa NIES-50])

HSP 1 Score: 210.305 bits (534), Expect = 5.393e-64
Identity = 115/214 (53.74%), Postives = 138/214 (64.49%), Query Frame = 0
Query:   67 PTSLTVSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDEL 279
            PT   + P+P   Y+   +  Q         L    T  V+ RGN  A IMV+GEAPG+ ED  G PFVG++G+LL+ ILASV L  E+ VYI N+   RPP NR P+  E+A  LPYL+E +RLVDP IILL GA A K L   +K+GIT+IRGQW E           QG RL MPIFHPSYLLRNPSR+V GPKWL WQDIQAVR +YDE+
Sbjct:   22 PTDAKI-PIPANTYSDMPELAQHCNQCHRCGLGNNRTHAVVGRGNLKAPIMVVGEAPGQNEDETGLPFVGKSGQLLEKILASVNLSTETDVYICNINKCRPPENRVPTTEEMAACLPYLLEQIRLVDPKIILLTGATAVKGLTN-DKRGITKIRGQWIE----------WQG-RLCMPIFHPSYLLRNPSREVGGPKWLMWQDIQAVRAKYDEI 222          
The following BLAST results are available for this feature:
BLAST of EWM22483.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102989|gb|EWM22483.1|0.000e+0100.00phage spo1 dna polymerase-related protein [Nannoch... [more]
gi|518332243|ref|WP_019502450.1|8.407e-6751.68uracil-DNA glycosylase [Pseudanabaena sp. PCC 6802... [more]
gi|1176234598|gb|OQY43543.1|9.381e-6752.66hypothetical protein B6242_14430 [Anaerolineaceae ... [more]
gi|515380047|ref|WP_016875285.1|3.862e-6652.36uracil-DNA glycosylase [Chlorogloeopsis fritschii][more]
gi|502957771|ref|WP_013192747.1|7.994e-6652.44uracil-DNA glycosylase [Trichormus azollae] >gi|29... [more]
gi|1011384597|ref|WP_062297347.1|1.969e-6553.70DNA polymerase [Nostoc piscinale] >gi|930353364|gb... [more]
gi|737171863|ref|WP_035158067.1|8.029e-6555.07DNA polymerase [Calothrix sp. 336/3] >gi|817929701... [more]
gi|1197737097|ref|WP_086687175.1|3.505e-6452.68uracil-DNA glycosylase [Nostoc sp. T09] >gi|119601... [more]
gi|654354261|ref|WP_027846911.1|4.228e-6453.74DNA polymerase [Mastigocoleus testarum] >gi|959131... [more]
gi|1210183532|dbj|BAZ02593.1|5.393e-6453.74phage SPO1 DNA polymerase-like protein [Tolypothri... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8208rna8208Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications