rna8205, rna8205 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8205
Unique Name	rna8205
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1230
Alignment location	KK037248.1:84556..86821 -

Link to JBrowse

Properties


Property Name	Value
Product	t-complex protein 1 subunit delta
Orig transcript id	gnl\|cribi\|Naga_100011g18.3447.mrna
Orig protein id	gnl\|cribi\|Naga_100011g18.3447
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:84556..86821 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g18	gene7948	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22447.1	cds8181	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8205	rna8205-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:84556..86821-
coding sequence from alignment at KK037248.1:84556..86821-

mRNA sequence

>rna8205 ID=rna8205|Name=rna8205|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp
ATGTGTCCCAGATTGTCTACTCATAATGTCGCTTACGCGGTTGTTACCAT
TTTTAAATGCGCATTTGAACACAGAAACAAGTCTACTCGCCCAAAGACGA
AGAACAAAAACGCTATGACCTACGCGCGTTCCTCTGCGCTAATCTTGATC
CCCGCGCTTCTCCTTCCCGTCATGCCCTATGCCTTTTTTCTCCGTATGTC
CCAATCCCCTTTGGGTGTGGGTGTAATTGGCTGCGGACGTATCGGGCAGA
TCCACAGCAATACCTTGGCTTTCCGGACGCCTGGTGCACGACTCGTAGCG
ATCACAGACCCGTTTGAAGACATGGGGAAGAAGGTCTTAGACCAAACAGG
TGGAATCCCCTCCTACCATAAGAATTATTTAGATCTATTGGATGAGGAAG
ATATAAAGGCCGTGGTTGTGGCATCTCCTACCCCTTACCATGTGGAGCAA
ATCATGGCGGCAGTAGAGCGGGGCAAACACGTGTTCTGCGAGAAGCCCAT
CTCCAACGACTTGGCCACCATTGATTCTTGCATTGAGGCCGCGGCAAAGG
CTGGGACGAAGCTCATACTAGGATTTCAGCGGCGCTTCGATGCCAACTTT
CAAGCTGTGAAACAACAAATCGTGCAAGGGGCCATTGGCAAGGTCCGGAC
GATCCGTATTGTCAGCCGGGACCCGGCCCCTCCCCCTGCAGATTACTTGA
AGACCAGTGGAGGCATATTCCTGGACATGAGCAGCCATGATTTTGACATG
GCTCGGTTTTTAGTGGGAAGCGATATCGAGGAGGTTTTTGTGCAAGGCAC
CGCTTGGGGGCCGGAAGCAGCGGGCGCAGGCGACCTGGACACTCAAATCA
CCTTGCTGCGCTTCGAGAACGGGGTGTTCGGGACCCTGGAGAACTCGCGT
TTGTGCTCTTTCGGATACGACCAGCGTGTGGAGGTGTTCGGAGAGCTGGG
TTCCTTGCAAGGAGAGAACAGGAGCCCGAGCACGGTGACCCGATCGGACG
CCGAGGGCGTGACTGCGGGACTGCCCTACTCGTTCTTCATGGACCGTTAC
GGCGACGCCTACGTAGACATTGTCAGGGCCTTCGTGCGGGAGGTGAGCGG
GGACGGTGGGGGAGGAGTGGAGCACCTGGCAAGCGCCGCGGACGGGAAAG
CGACGGTCATGGCGGGCATGGCGGCCAAGGCCTCAGTGCAGGGCCGGCGC
CTGGTCAAGGTCTCGGAAATGGGGCGTTAG

protein sequence of rna8205

>rna8205-protein ID=rna8205-protein|Name=rna8205|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MAPFFFNFENCVIDLSASRSRSTICLGSSPDLVFLTHLCHHQRQHFMVLP
GVADAIRTSLGPRGMDKMIQRGDGEVIITNDGATILGQMSVFHPCAKMLV
ELSKSQDIEAGDGTTSVVVLAGSMLNACSDLLAKGIHPTMIADSFKAASE
KAEEILQAMSKPVDLRARETLIDAVVTCLSSKVVSQNSDILAPIAVDAVL
KIIDPDTARNVDLNDIRIVKQLGGTVDDTELVPGIVFEKGANKGAAGGPT
RIEKAKVGLIQFHLSAPKTDMENNVVVSDYAAMDRILREERKYILNLVKK
IKKSGCNVLLVQKSILRDAYNDLSLHFLAKMDIMVITEVERTDVEFIQRT
LGCMPVAHIDSFTPDKLGSAELVTEVTVPGGSHKVVKVTGVQNPGSTMSI
LIRGSNKLVLEEADRSLHDALCVVRSLVKKRFLIAGGGAAETEVNLGLTE
WSKMQAGMKAYCVAAFAQSLEVVPYTLAENGGLNPIAIVTELRRRHAGGE
KGTGINVRQSNISDMYEERVVQPLLVSLSAISLASETVCMLMKIDDLVPV
ARV

mRNA from alignment at KK037248.1:84556..86821-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8205 ID=rna8205|Name=rna8205|organism=Nannochloropsis gaditana|type=mRNA|length=2266bp|location=Sequence derived from alignment at KK037248.1:84556..86821- (Nannochloropsis gaditana)
CATGAAAACGTTGTTCCTCACGCATTTTACCAACCTTCATGCGACTTACA
CAGTCATGGTTGGCGCCACAAGGCGAGGTGAGACTCTTAAAGAGTCATCC
AAGGAGAAGGACGTTCGCATTTCTAACATCGTGGCCGCGAAAGGTAAGCG
CACGGGAAAAACTTTTTGATACCTTCTGTTGCCTCGTGTCTTTCTTGTAC
CAGATTTTTTTGACATGCCAAATTACAGGTTGGAAAGGCAAATTAAAGCA
CAAACTATTATTTGCTTACTGAAAGTATAACCATGTAGTTGTGTTCCGTA
GCTTGTACGCGTTATGATCATGTACCTATTTTCATGAGGCATATTTAGAC
AAATTGCTTGTTCTGTACGTCTGCTGGGCACGATTCATGTGAAGCAAATT
ATGCACGGTGTACATGGCACCATTTTTTTTTAATTTCGAAAATTGTGTCA
TTGATTTGAGTGCATCACGTAGTAGGAGCACGATTTGTCTTGGCAGCTCT
CCCGACCTTGTGTTTCTTACCCATCTCTGTCATCACCAACGTCAACATTT
TATGGTGCTTCCAGGCGTCGCCGATGCCATTCGCACGAGTTTGGGCCCTC
GTGGCATGGACAAGATGATCCAGCGCGGTGACGGGGAGGTCATCATCACC
AACGATGGCGCTACCATACTGGGGCAGATGTCAGTCTTCCATCCCTGCGC
GAAAATGCTCGTGGAGCTATCAAAGTCTCAGGACATCGAGGCGGGCGACG
GGACGACAAGTGTGGTGGTCCTTGCCGGCTCTATGCTAAACGCATGTTCT
GACCTTTTGGCCAAAGGAATCCATCCCACCATGATCGCGGACTCCTTCAA
GGCCGCCTCGGAGAAGGCAGAGGAGATCTTACAGGCCATGTCGAAGCCCG
TGGACCTTCGCGCGCGGGAGACGCTCATTGACGCGGTGGTGACATGTCTG
AGCAGTAAGGTGGTCTCCCAAAATTCCGACATCCTTGCCCCGATCGCCGT
GGACGCGGTGCTGAAGATCATCGACCCCGACACGGCCAGGAACGTGGATC
TGAACGACATCCGTATCGTCAAGCAGCTCGGGGGGACGGTGGACGACACC
GAGCTCGTGCCAGGGATAGTTTTTGAGAAGGGCGCCAACAAGGGGGCAGC
CGGAGGCCCTACCCGCATCGAGAAGGCGAAGGTGGGCCTGATCCAATTCC
ACCTTTCTGCCCCGAAGACGGACATGGAGAATAACGTAGTCGTCTCCGAC
TACGCGGCCATGGACCGGATCTTGCGGGAGGAGCGCAAGTACATATTGAA
CCTGGTCAAGAAGATCAAAAAATCTGGCTGCAATGTCCTGCTTGTGCAAA
AATCCATTCTTCGGGACGCCTACAACGACCTTTCCCTCCATTTCCTGGCC
AAGATGGACATCATGGTGATCACGGAGGTTGAGCGGACCGACGTCGAGTT
CATCCAACGCACCCTGGGCTGCATGCCTGTTGCGCACATCGACTCGTTCA
CGCCCGATAAGCTTGGTTCGGCGGAGCTGGTGACGGAGGTGACGGTGCCG
GGGGGGTCTCACAAGGTGGTGAAGGTCACGGGTGTGCAGAACCCGGGCTC
GACCATGTCCATCCTGATCCGCGGCTCGAACAAGCTGGTCTTGGAGGAGG
CGGATCGCTCTCTGCACGACGCCCTTTGTGTGGTGCGGAGCCTGGTCAAG
AAACGCTTCCTGATCGCCGGGGGGGGGGCGGCGGAGACGGAAGTGAACCT
GGGTCTCACCGAGTGGTCTAAGATGCAGGCGGGGATGAAAGCCTACTGCG
TGGCTGCGTTCGCCCAGTCCTTGGAGGTGGTGCCTTACACGCTCGCGGAG
AACGGAGGATTGAATCCCATCGCGATCGTGACGGAGCTTCGGCGTCGGCA
CGCGGGGGGGGAGAAGGGCACCGGTATTAACGTGCGACAGTCAAATATCT
CGGACATGTACGAGGAGAGGGTGGTGCAGCCCCTGCTGGTGAGCCTGAGT
GCCATCTCCCTGGCGTCGGAGACTGTGTGTATGCTTATGAAGATCGACGA
CCTGGTGCCCGTGGCGCGCGTGTGAGGAAGTTGACGCAGGACGTGCGCGG
GACAAGGGGGCGATCGTAGAGGACAAGAGTGTGTCCGGCCCCCGGGACGT
GTATATGCCTGGTGGAGAGGACAGAGGCAGAAGGAAGCAAGGAACGCGTA
GAAGAAGCCCGAGGGCTCCCTGTAGACAGTAACCGCAAAGAGTCAGAAGA
GATCCTGTTCTTCCCA

Coding sequence (CDS) from alignment at KK037248.1:84556..86821-

>rna8205 ID=rna8205|Name=rna8205|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at KK037248.1:84556..86821- (Nannochloropsis gaditana)
ATGGCACCATTTTTTTTTAATTTCGAAAATTGTGTCATTGATTTGAGTGC
ATCACGTAGTAGGAGCACGATTTGTCTTGGCAGCTCTCCCGACCTTGTGT
TTCTTACCCATCTCTGTCATCACCAACGTCAACATTTTATGGTGCTTCCA
GGCGTCGCCGATGCCATTCGCACGAGTTTGGGCCCTCGTGGCATGGACAA
GATGATCCAGCGCGGTGACGGGGAGGTCATCATCACCAACGATGGCGCTA
CCATACTGGGGCAGATGTCAGTCTTCCATCCCTGCGCGAAAATGCTCGTG
GAGCTATCAAAGTCTCAGGACATCGAGGCGGGCGACGGGACGACAAGTGT
GGTGGTCCTTGCCGGCTCTATGCTAAACGCATGTTCTGACCTTTTGGCCA
AAGGAATCCATCCCACCATGATCGCGGACTCCTTCAAGGCCGCCTCGGAG
AAGGCAGAGGAGATCTTACAGGCCATGTCGAAGCCCGTGGACCTTCGCGC
GCGGGAGACGCTCATTGACGCGGTGGTGACATGTCTGAGCAGTAAGGTGG
TCTCCCAAAATTCCGACATCCTTGCCCCGATCGCCGTGGACGCGGTGCTG
AAGATCATCGACCCCGACACGGCCAGGAACGTGGATCTGAACGACATCCG
TATCGTCAAGCAGCTCGGGGGGACGGTGGACGACACCGAGCTCGTGCCAG
GGATAGTTTTTGAGAAGGGCGCCAACAAGGGGGCAGCCGGAGGCCCTACC
CGCATCGAGAAGGCGAAGGTGGGCCTGATCCAATTCCACCTTTCTGCCCC
GAAGACGGACATGGAGAATAACGTAGTCGTCTCCGACTACGCGGCCATGG
ACCGGATCTTGCGGGAGGAGCGCAAGTACATATTGAACCTGGTCAAGAAG
ATCAAAAAATCTGGCTGCAATGTCCTGCTTGTGCAAAAATCCATTCTTCG
GGACGCCTACAACGACCTTTCCCTCCATTTCCTGGCCAAGATGGACATCA
TGGTGATCACGGAGGTTGAGCGGACCGACGTCGAGTTCATCCAACGCACC
CTGGGCTGCATGCCTGTTGCGCACATCGACTCGTTCACGCCCGATAAGCT
TGGTTCGGCGGAGCTGGTGACGGAGGTGACGGTGCCGGGGGGGTCTCACA
AGGTGGTGAAGGTCACGGGTGTGCAGAACCCGGGCTCGACCATGTCCATC
CTGATCCGCGGCTCGAACAAGCTGGTCTTGGAGGAGGCGGATCGCTCTCT
GCACGACGCCCTTTGTGTGGTGCGGAGCCTGGTCAAGAAACGCTTCCTGA
TCGCCGGGGGGGGGGCGGCGGAGACGGAAGTGAACCTGGGTCTCACCGAG
TGGTCTAAGATGCAGGCGGGGATGAAAGCCTACTGCGTGGCTGCGTTCGC
CCAGTCCTTGGAGGTGGTGCCTTACACGCTCGCGGAGAACGGAGGATTGA
ATCCCATCGCGATCGTGACGGAGCTTCGGCGTCGGCACGCGGGGGGGGAG
AAGGGCACCGGTATTAACGTGCGACAGTCAAATATCTCGGACATGTACGA
GGAGAGGGTGGTGCAGCCCCTGCTGGTGAGCCTGAGTGCCATCTCCCTGG
CGTCGGAGACTGTGTGTATGCTTATGAAGATCGACGACCTGGTGCCCGTG
GCGCGCGTGTGA

Synonyms

Publications