rna8202, rna8202 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8202
Unique Name	rna8202
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1284
Alignment location	KK037248.1:77883..79508 +

Link to JBrowse

Properties


Property Name	Value
Product	tyrosyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100011g15.3497.mrna
Orig protein id	gnl\|cribi\|Naga_100011g15.3497
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:77883..79508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g15	gene7945	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8202	rna8202-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22497.1	cds8178	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:77883..79508+
coding sequence from alignment at KK037248.1:77883..79508+

mRNA sequence

>rna8202 ID=rna8202|Name=rna8202|organism=Nannochloropsis gaditana|type=mRNA|length=1284bp
ATGCGACGAAGGCACCTTGGAGCGATCATATTGATATGCAGCGGCACATT
ATCGTCCGCTTTCACAGTCCCATTGCGGCCGTGGGAATCTTGCGGCAGTG
TGATTTATCCGCAGCGGCTCCCCCAGTCGGCACGGGCGATGTCGACGCTT
GATGTAAGCAGCCGCAGAAGACCGGTGGGGTCTTTTTTTAAGCGGGGGAG
TGCGCTGCTCAGAGCAGCCGGTGCAGCAGCAGAGACAGGGAAGGAGGTCG
ACGCTACCAAGCTGGCCGCCGAGCTGACAGCGATCAAGCCCATGAAAATA
AAGGAGATCAAGGCGGAGTTGGAGGAGCGTGGGGTGGATTGGAAGGATTT
ACTGGAGAAGGAGGAGTTCATGCACAGGCTGGCCTCGGCGAGGGTGCAGG
GGATCACGAAGCCTCCACCCTCTGTGGAGGAGACGAAGGAAGAAGCGGCA
AGCACAGTAGGAGGAGACCAGTCGCAGACCCAATCAGCTAACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGT
CTTCGACCACGTACTCGGATGGAAAGGAAAAAGGAGGTGGAGAGACGAAA
GCGGCCAAGGTGGATGAAGCGACGCGTCACAGTGAGGTGTTGGCTGAAGT
GATGAAATTGAAGATATCAGAAATCAAGAAGGAGCTGGACCTCCTCAAGA
TACCTCACTCCAGTTTCTTCGAGAAGCGAGAGTTCGCGGAGGCTCTAGCG
CGGGCCCGTCTCAACCCGCCCTCCACCACTAGCAGGGGAGAGAACGTGGA
CCCGGACGAAGACCCAAGCCAGTACCGATTCGTGGAGGTTAAGCGGATGC
CTCGAGAAGGTGGTGGAGAGGGAGGGCGGACCGGGGGGAGAGCAGGTGCA
GGGGCAGGGGCAGGGGCAGGGGGAGGAGATCCGTTTTCAGATATGTTCAA
TCCCCGTGGAGGAGGCGCGGCATCGGGCAGTGGTGGAGGCTTTGCGGATG
CATTTTTTAGGCAAGCAGGTGGAGCAGGCGGGGCAAGAGGGAGTCCGTTT
GGTGGGGGTGGGTTCGGCGGTATGCCGGGAATGGGAGGCGTGGACCCGAG
CATGCTCGCGTCCATCATGTCCAACCCGAGGGCCCAGGCCGCCTTCCAGC
GCGCGCAACGGAACCCGAAAGTGATGGCTGCCCTGCAGGACGTTATGGCG
AACCCAGGAAATATTAGCAAATACGCCAACGACAAGGAGATATCCAGCAT
TTTGAACGAGCTGCAGTCCTTGTTCAAAAAATGA

protein sequence of rna8202

>rna8202-protein ID=rna8202-protein|Name=rna8202|organism=Nannochloropsis gaditana|type=polypeptide|length=541bp
MEKEKSLRTLRRQHSQSKISRAVPFSKIVESPRVSSRHRAKRRLKDSLFF
ICGVMVFLAIGSKASTIQQSSTPLCAFAARLSLQRPIVSHRINLRSPQRS
RLTALSSNAEPATASANQAIPTDFESSFLQTLSARGYIHQCTDFKALDEA
CAAGKPIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTT
KVGDPSGKDEARKLMTYETIQGNIASISEVFRRFLAFGDGATDALLVNND
EWLSPLRYLDFLRDYGQHFTINRMLNFESVKMRLDRESPLSFLEFNYMIL
QAYDFLELSRRYQARLQLGGSDQWGNIINGVELARKVDGRHLFGLTAPLM
TTSDGKKMGKTASGAVWLKKELLSEYDYWQFWRNTNDADVTRFLKLFTEV
PLEKIEELARLEGAGINEAKVILADEATKLLHGEECLKEIHATVANLFAG
GSTEDTAALPRVVVTKSELGDAGVQVAELFVRLDLAKSKAEARRLIKGGG
ARLNGEQIKEETFVVTVDSFDKPEIMLSAGKKKHGMVELSG

mRNA from alignment at KK037248.1:77883..79508+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8202 ID=rna8202|Name=rna8202|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp|location=Sequence derived from alignment at KK037248.1:77883..79508+ (Nannochloropsis gaditana)
atggagaaagagaagagttTAAGAACCTTACGTAGACAGCATTCTCAATC
AAAAATTTCAAGAGCGGTGCCGTTTAGCAAAATAGTAGAGTCACCACGGG
TCTCAAGCCGACATCGCGCAAAACGAAGACTTAAGGactctcttttcttc
atctGTGGGGTCATGGTTTTCCTCGCGATAGGGAGTAAAGCCTCCACGAT
TCAGCAGTCCTCGACACCCCTCTGCGCATTCGCGGCCCGTCTTTCTCTTC
AAAGGCCTATTGTGTCGCACCGTATCAACCTCCGCTCACCTCAACGTTCC
CGACTAACCGCCCTATCTAGCAATGCCGAGCCCGCGACGGCTTCTGCCAA
CCAAGCTATACCTACCGATTTTGAATCGAGCTTCCTTCAAACACTTAGCG
CGCGTGGGTATATCCATCAGTGCACCGACTTCAAAGCTTTGGACGAGGCC
TGCGCGGCCGGTAAGCCCATTGCGGCGTATTTAGGCTTCGACGCCACAGC
CCCGAGCCTGCACGTTGGGAGCTTGCTGCAAATAATGATTTTGCGACACC
TGCAGAAGTCAGGACACAAGCCCTTGGTGCtaatgggaggagggaccacg
AAGGTGGGGGATCCGTCGGGAAAGGATGAAGCGCGAAAACTGATGACCTA
CGAGACCATCCAGGGGAATATCGCCTCCATTTCCGAGGTATTCCGgcgct
tccttgccttcgGAGACGGTGCCACGGACGCGCTCCTCGTCAACAATGAC
GAGTGGTTGTCGCCCCTGCGGTACCTGGACTTTTTGAGAGACTACGGCCA
GCACTTCACCATCAACCGGATGCTCAACTTCGAGAGTGTAAAGATGCGCC
TCGATCGAGAgtctcccttgtcctttcTCGAGTTCAACTACATGATTTTA
CAGGCCTACGACTTCTTGGAGCTCTCACGCAGATACCAAGCCCGCCTGCA
GTTGGGGGGATCGGACCAGTGGGGCAACATCATCAACGGGGTGGAGCTGG
CGCGTAAGGTGGATGGGCGACACCTCTTCGGGTTGACAGCCCCCCTCATG
ACCACGTCCgacgggaagaaaatggGCAAGACAGCCTCGGGCGCGGTCTG
GTTGAAGAAGGAGCTGCTTTCGGAGTATGACTACTGGCAATTTTGGCGGA
ACACGAATGACGCGGACGTGACACGATTTTTGAAGCTCTTTACTGAGGTG
CCTCTGGAGAAGATCGAGGAGCTGGCCCgcttggagggggcgggcataAA
TGAAGCAAAGGTCATACTGGCAGACGAAGCCACTAAACTTTTACATGGCG
AGGAGTGTCTGAAGGAGATTCACGCGACTGTGGCCAACCTTTTTGCGGGG
GGCAGCACGGAAGACACCGCAGCTTTGCCGCGCGTGGTCGTAACAAAATC
TGAGCTGGGAGATGCAGGCGTCCAAGTTGCTGAGCTTTTTGTGCGCCTTG
ACCTCGCGAAATCGAAGGCAGAGGCTCGACGACTTatcaaaggaggaggg
gcgcgcTTAAACGGAGAGCAAATCAAAGAAGAGACTTTTGTGGTGACTGT
GGACAGCTTTGACAAACCGGAAATAATGCTGTCAGCGGGCAAGAAAAAAC
ACGGCATGGTCGAGCTTAGTGGCTAA

Coding sequence (CDS) from alignment at KK037248.1:77883..79508+

>rna8202 ID=rna8202|Name=rna8202|organism=Nannochloropsis gaditana|type=CDS|length=1626bp|location=Sequence derived from alignment at KK037248.1:77883..79508+ (Nannochloropsis gaditana)
atggagaaagagaagagttTAAGAACCTTACGTAGACAGCATTCTCAATC
AAAAATTTCAAGAGCGGTGCCGTTTAGCAAAATAGTAGAGTCACCACGGG
TCTCAAGCCGACATCGCGCAAAACGAAGACTTAAGGactctcttttcttc
atctGTGGGGTCATGGTTTTCCTCGCGATAGGGAGTAAAGCCTCCACGAT
TCAGCAGTCCTCGACACCCCTCTGCGCATTCGCGGCCCGTCTTTCTCTTC
AAAGGCCTATTGTGTCGCACCGTATCAACCTCCGCTCACCTCAACGTTCC
CGACTAACCGCCCTATCTAGCAATGCCGAGCCCGCGACGGCTTCTGCCAA
CCAAGCTATACCTACCGATTTTGAATCGAGCTTCCTTCAAACACTTAGCG
CGCGTGGGTATATCCATCAGTGCACCGACTTCAAAGCTTTGGACGAGGCC
TGCGCGGCCGGTAAGCCCATTGCGGCGTATTTAGGCTTCGACGCCACAGC
CCCGAGCCTGCACGTTGGGAGCTTGCTGCAAATAATGATTTTGCGACACC
TGCAGAAGTCAGGACACAAGCCCTTGGTGCtaatgggaggagggaccacg
AAGGTGGGGGATCCGTCGGGAAAGGATGAAGCGCGAAAACTGATGACCTA
CGAGACCATCCAGGGGAATATCGCCTCCATTTCCGAGGTATTCCGgcgct
tccttgccttcgGAGACGGTGCCACGGACGCGCTCCTCGTCAACAATGAC
GAGTGGTTGTCGCCCCTGCGGTACCTGGACTTTTTGAGAGACTACGGCCA
GCACTTCACCATCAACCGGATGCTCAACTTCGAGAGTGTAAAGATGCGCC
TCGATCGAGAgtctcccttgtcctttcTCGAGTTCAACTACATGATTTTA
CAGGCCTACGACTTCTTGGAGCTCTCACGCAGATACCAAGCCCGCCTGCA
GTTGGGGGGATCGGACCAGTGGGGCAACATCATCAACGGGGTGGAGCTGG
CGCGTAAGGTGGATGGGCGACACCTCTTCGGGTTGACAGCCCCCCTCATG
ACCACGTCCgacgggaagaaaatggGCAAGACAGCCTCGGGCGCGGTCTG
GTTGAAGAAGGAGCTGCTTTCGGAGTATGACTACTGGCAATTTTGGCGGA
ACACGAATGACGCGGACGTGACACGATTTTTGAAGCTCTTTACTGAGGTG
CCTCTGGAGAAGATCGAGGAGCTGGCCCgcttggagggggcgggcataAA
TGAAGCAAAGGTCATACTGGCAGACGAAGCCACTAAACTTTTACATGGCG
AGGAGTGTCTGAAGGAGATTCACGCGACTGTGGCCAACCTTTTTGCGGGG
GGCAGCACGGAAGACACCGCAGCTTTGCCGCGCGTGGTCGTAACAAAATC
TGAGCTGGGAGATGCAGGCGTCCAAGTTGCTGAGCTTTTTGTGCGCCTTG
ACCTCGCGAAATCGAAGGCAGAGGCTCGACGACTTatcaaaggaggaggg
gcgcgcTTAAACGGAGAGCAAATCAAAGAAGAGACTTTTGTGGTGACTGT
GGACAGCTTTGACAAACCGGAAATAATGCTGTCAGCGGGCAAGAAAAAAC
ACGGCATGGTCGAGCTTAGTGGCTAA

Synonyms

Publications