rna8201, rna8201 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8201
Unique Name	rna8201
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2648
Alignment location	KK037248.1:75628..77328 +

Link to JBrowse

Properties


Property Name	Value
Product	Heat shock chaperonin-binding protein
Orig transcript id	gnl\|cribi\|Naga_100011g14.3413.mrna
Orig protein id	gnl\|cribi\|Naga_100011g14.3413
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:75628..77328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g14	gene7944	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8201	rna8201-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22413.1	cds8177	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:75628..77328+
coding sequence from alignment at KK037248.1:75628..77328+

mRNA sequence

>rna8201 ID=rna8201|Name=rna8201|organism=Nannochloropsis gaditana|type=mRNA|length=2648bp
AATGTGTAATAACACCCTTTTATTTTATCCGATGTTCAGCTTACTGATAA
GCTTCACCCCATTGAACTCTCAACGAATTACGAAAGTGTGAGCGATGTCT
TTCTGTCCCCCCCTGGGACGATCGCTGTGATGCCTAGATTTGTTTGCATC
AAAGACCACACACCGTCTGGTCGTACAGTGTAGACGCGACGGAAAGTGTC
CAAGCTATTAGATGTGCTTCACTGCATTAGCACTGATTGTGGTTGCACAA
GCGATGCTTCTCACAGATATTCATCGCCATCTCTGATACATGCTATGAAG
TTGACTCTTCTTGAAATAAATGACTCAGGACAAGCACCACGCTACAGGAA
ACGACGCTGCAGCCTTTTCAGGCGAACGCGCAAGTTTACTGGTGAAGATT
AGGGTTGTCGACTGGCATTGGAGTAAGAGGAGAGATGAGCAAGACCGTTT
TCGTGGGTAATCTATCATGGGGCACCACCGCAGACAGTCTGACAGCCATC
ATGGAGACAGCCGGTCGTGTGTTGGGCGTCGAAGTCCAAGCACATAGTGA
CACGGGCCGCTCCAAGGGGTGGGCCCTCGTCACATTTGAGACAGCAGAGG
ATGCGAGCAGAGCGATGGAGCTACTGTGTGGACGGGAGGTGGAAGGTCGG
CCGTTGTACGTCCGAGAGGACCGAACCGAGATTGAGAAGGAGGAGGGATT
CGTCGTATTTGTGGGGAATCTGCCCTGGGACATGACGGCGAGCGGGCTGC
GGACCGTCTTCAGCGAGTTCAGCCCCTACGACGTACACATCAAGACCAAC
ATGTCCGGGCGCTCCCGAGGCTTTGGCCTTCTACGCTTCCGGTCCTCGGA
GGAAGCACAACGCGCCATCGAGCAGATGCACGGGATAACGGTCCAAGAGC
GGAAGATTCTTGTCCGCTTGGACCGGGCGCATCTGGAGATGATGGGCCAC
AGCCCTGCGACCATGGAGGCAAGCGACACCGTCACCTGCGGAAACATTCC
GTGGCACACGGGGGACGAGGTCTTGGCCTGTCACATGGCGCAGGCGGGGA
GGGTGGTCTCGTGTCAGATCCAACGGCACGCGGATACCCTGCGGAGCAAG
GGTTGGGCGATCATCCGCTACGTCACAGTTGAGGAGGGCACGAACGCGGT
CCGCTCCCTGCATCGGACTGTCCTGGACGACCGGACCCTCAACGTGCGCT
TCTACCGGCCAAACAAGACGGTGGTAGAGGGGGACGCGGCCACCTCGGGC
TTCCCCTCCGCGTACGCAGTGGCGCCTTTGGGAGGAGAGCGAGGGGGCGG
GGCGGAGAGGGGGATGAGGAGCAGGAGGATGATTCAGGGACCAAGTGATG
GGATGGGCGGGAACCTGGCGATGAATGGCGGGCGAGGGGGGATGCTCGGT
TACGACCTGTACCAACAGCAGCACGTGCCCTTGCAGCACATGCACGCACA
CCAGCACTTGCATCAACCGCCGCTGCAACACTTGATGATGCAGCCCTTCC
CGGGACCGGTTAGGAATTAAAAGGGTGAAGGCGGTGGTCAGACTGTATCT
CTGCTTGTGGTGATGCGAATGAGGGAGAGGAATCGGTGGGCGTCTCTTCT
CTCCAGGCTTCCTGCGGGCCATAGTGATGTATTTCAGCCATTTGCATATT
ATGTGCACCTTCACTGATACGTGTCAGCCGCCGAAGTCCGTCAATGAACG
CGTCTTCGGGGAGTTGAGGGTTATGTATGTATGACGGACCTTCGCGCAGC
TTCTGATGTGTGTTGCAAGTAATTTTTTTGGGGATGGTGGGGGCCTCTTT
GATCGAGACTGTATTCCTTCATGATGACATGATCTCAGTAAGGAATGTGT
GACACTGAGCTCTTTCAGAAAGAGCGCTTGCAAGGACGCAATGGAGGAAA
ACTTCGGGTGAGATCCGAGCTGAGCAACGCGTTTGCATTCGTGTGAGAGA
CGCGTGCGCGGACTCGTTGTGGATTTGGAGGCCCAAAGAGGCATCCGTCG
ACGACCTTGGATCGCAAATCGACGAAAGTCCACAGCGACCGCTGAAAATG
TGTGTTTTGCAAGTTTCCGGAGCACTTAAAGATGGTTGTACTCAATAATA
GATTGCGAGCCTTGTAGCCCTCCTATCGTCATGCGCGTACCGCCCACTGC
CAATATGCATGTCTTGTCGTAGGATACAGTAAGCACAGTGTACAATCAGC
ATCCCGGGTATTACAAGGACGTGAGCAGCCATTCTGCTGTTGGACTTGAT
AAGAGAGGGGCAGAAATCAACGCATTACAAGGAACAAATACAGGCAGATT
GGGGTGAAATGGGGTTCAATAGAGTTCGGGGCACAAAAGGAGTACGATTT
GACTATAAAAGTGACAGAGGAGAATTGATATGTTGGAACAATAAATTAAT
CAAAGAGAGGTCAGAAATGATGAAAATGAGCATTTCCAAGGCATTGGATA
GGAATATCTTAAGCCTTACTAGAGAGGCTGACATTGGTGAATGTTAATTT
TATGATTAACACACATTAGGATCTATCGTGGTTAAAGAAAGTAGGAGTAG
CAAAGTCAGGCGGACTGGGAAAGGCCGCGTCGAATACTTCCCTCCGAGTG
AGAGACAAATCTGAAAGAATGAACTATGTGAGAGTTCCAAATCCAATC

protein sequence of rna8201

>rna8201-protein ID=rna8201-protein|Name=rna8201|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MRRRHLGAIILICSGTLSSAFTVPLRPWESCGSVIYPQRLPQSARAMSTL
DVSSRRRPVGSFFKRGSALLRAAGAAAETGKEVDATKLAAELTAIKPMKI
KEIKAELEERGVDWKDLLEKEEFMHRLASARVQGITKPPPSVEETKEEAA
STVGGDQSQTQSANSSSSSSSSSSSSSSSSSSSSSTTYSDGKEKGGGETK
AAKVDEATRHSEVLAEVMKLKISEIKKELDLLKIPHSSFFEKREFAEALA
RARLNPPSTTSRGENVDPDEDPSQYRFVEVKRMPREGGGEGGRTGGRAGA
GAGAGAGGGDPFSDMFNPRGGGAASGSGGGFADAFFRQAGGAGGARGSPF
GGGGFGGMPGMGGVDPSMLASIMSNPRAQAAFQRAQRNPKVMAALQDVMA
NPGNISKYANDKEISSILNELQSLFKK

mRNA from alignment at KK037248.1:75628..77328+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8201 ID=rna8201|Name=rna8201|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp|location=Sequence derived from alignment at KK037248.1:75628..77328+ (Nannochloropsis gaditana)
ATGCGACGAAGGCACCTTGGAGCGATCATATTGATATGCAGCGGCACATT
ATCGTCCGCTTTCACAGTCCCATTGCGGCCGTGGGAATCTTGCGGCAGTG
TGATTTATCCGCAGCGGCTCCCCCAGTCGGTACGTTACCAGGTCATTTCA
CAAGCatcattttttaaaaagacTTTAGCAGGATGTGCAGGTCGCGCCGT
CTGATATCGAAGCTTTCTACTTCGAGAGCGGACTGATTATCTTATAGGGT
TAAGTTTCGAGCGCATGTTCTTTTAGCAGTAAGAAAGACACCAGACAAGT
CTCAGGCCGCTTCATGTGTGTACAAGTCGTGCACCCACGTCTCGATTGAG
CCCACCGCATGTTCAGCTCCAGATGAAGTTGAGGCTCATATTTGACGATA
GATACCGTCTGCTCTCGTATTTTTCAGGCACGGGCGATGTCGACGCTTGA
TGTAAGCAGCCGCAGAAGACCGGTGGGGTCTTTTTTTAAGCGGGGGAGTG
CGCTGCTCAGAGCAGCCGGTGCAGCAGcagagacagggaaggaggtcgaC
GCTACCAAGCTGGCCGCCGAGCTGACAGCGATCAAGCCCATGAAAATAAA
GGAGATCAAggcggagttggaggagCGTGGGGTGGATTGGAAGGATTtac
tggagaaggaggagttcATGCACAGGCTGGCCTCGGCGAGGGTGCAGGGG
ATCACGAAGCCTCCACCCTctgtggaggagacgaaggaagaagcggcaAG
CACAGTAGGAGGAGACCAGTCGCAGACCCAATCAGctaactcctcctcct
cctcctcctcctcctcctcttcctcctcctcctcctcctcctcctcgtct
tcgacCACGTACTcggatggaaaggaaaaaggaggtggagagacGAAAGC
GGCCAAGGTGGATGAAGCGACGCGTCACAGTGAGGTGTTGGCTGAAGTGA
TGAAATTGAAGGTAAGTTATTCTCGTTCAGTGCGATTGCTTCGTgagcaa
ggcgggagggacacTTTTCGTGCCGTATCGATGGCCTCATCTTTTGCATC
CCCTCTTTTATGGAATCGCTACTCCTTCAGATATCAGAAATCAAGAAGGA
GCTGGACCTCCTCAAGATACCTCACTCCAGTTTCTTCGAGAAGCGAGAGT
TCGCGGAGGCTCTAGCGCGGGCCCGTCTcaacccgccctccaccactaGC
AGGGGAGAGAACGTGGACCCGGACGAAGACCCAAGCCAGTACCGATTCGT
GGAGGTTAAGCGGATGCCtcgagaaggtggtggagagggagggcggaccg
gggggagagcaggtgcaggggcaggggcaggggcagggggaggagatccg
TTTTCAGATATGTTCAATccccgtggaggaggcgcggcaTCGGGCAGTGG
TGGAGGCTTTGCGGATGCATTTTTTAGGCAAGCaggtggagcaggcgggg
caagagggagtcCGTTTGGTGGGGGTGGGTTCGGCGGTATGCCGGGAATG
GGAGGCGTGGACCCGAGCATGCTCGCGTCCATCATGTCCAACCCGAGGGC
CCAGGCCGCCTTCCAGCGCGCGCAACGGAACCCGAAAGTGATGGCTGCCC
TGCAGGACGTTATGGCGAACCCAGGAAATATTAGCAAATACGCCAACGAC
AAGGAGATATCCAGCATTTTGAACGAGCTGCAGTCCTTGTTCAAAAAATG
A

Coding sequence (CDS) from alignment at KK037248.1:75628..77328+

>rna8201 ID=rna8201|Name=rna8201|organism=Nannochloropsis gaditana|type=CDS|length=3852bp|location=Sequence derived from alignment at KK037248.1:75628..77328+ (Nannochloropsis gaditana)
ATGCGACGAAGGCACCTTGGAGCGATCATATTGATATGCAGCGGCACATT
ATCGTCCGCTTTCACAGTCCCATTGCGGCCGTGGGAATCTTGCGGCAGTG
TGATTTATCCGCAGCGGCTCCCCCAGTCGGCACGGGCGATGTCGACGCTT
GATGTAAGCAGCCGCAGAAGACCGGTGGGGTCTTTTTTTAAGCGGGGGAG
TGCGCTGCTCAGAGCAGCCGGTGCAGCAGcagagacagggaaggaggtcg
aCGCTACCAAGCTGGCCGCCGAGCTGACAGCGATCAAGCCCATGAAAATA
AAGGAGATCAAggcggagttggaggagCGTGGGGTGGATTGGAAGGATTt
actggagaaggaggagttcATGCACAGGCTGGCCTCGGCGAGGGTGCAGG
GGATCACGAAGCCTCCACCCTctgtggaggagacgaaggaagaagcggca
AGCACAGTAGGAGGAGACCAGTCGCAGACCCAATCAGctaactcctcctc
ctcctcctcctcctcctcctcttcctcctcctcctcctcctcctcctcgt
cttcgacCACGTACTcggatggaaaggaaaaaggaggtggagagacGAAA
GCGGCCAAGGTGGATGAAGCGACGCGTCACAGTGAGGTGTTGGCTGAAGT
GATGAAATTGAAGATATCAGAAATCAAGAAGGAGCTGGACCTCCTCAAGA
TACCTCACTCCAGTTTCTTCGAGAAGCGAGAGTTCGCGGAGGCTCTAGCG
CGGGCCCGTCTcaacccgccctccaccactaGCAGGGGAGAGAACGTGGA
CCCGGACGAAGACCCAAGCCAGTACCGATTCGTGGAGGTTAAGCGGATGC
Ctcgagaaggtggtggagagggagggcggaccggggggagagcaggtgca
ggggcaggggcaggggcagggggaggagatccgTTTTCAGATATGTTCAA
TccccgtggaggaggcgcggcaTCGGGCAGTGGTGGAGGCTTTGCGGATG
CATTTTTTAGGCAAGCaggtggagcaggcggggcaagagggagtcCGTTT
GGTGGGGGTGGGTTCGGCGGTATGCCGGGAATGGGAGGCGTGGACCCGAG
CATGCTCGCGTCCATCATGTCCAACCCGAGGGCCCAGGCCGCCTTCCAGC
GCGCGCAACGGAACCCGAAAGTGATGGCTGCCCTGCAGGACGTTATGGCG
AACCCAGGAAATATTAGCAAATACGCCAACGACAAGGAGATATCCAGCAT
TTTGAACGAGCTGCAGTCCTTGTTCAAAAAATGAATGCGACGAAGGCACC
TTGGAGCGATCATATTGATATGCAGCGGCACATTATCGTCCGCTTTCACA
GTCCCATTGCGGCCGTGGGAATCTTGCGGCAGTGTGATTTATCCGCAGCG
GCTCCCCCAGTCGGCACGGGCGATGTCGACGCTTGATGTAAGCAGCCGCA
GAAGACCGGTGGGGTCTTTTTTTAAGCGGGGGAGTGCGCTGCTCAGAGCA
GCCGGTGCAGCAGcagagacagggaaggaggtcgaCGCTACCAAGCTGGC
CGCCGAGCTGACAGCGATCAAGCCCATGAAAATAAAGGAGATCAAggcgg
agttggaggagCGTGGGGTGGATTGGAAGGATTtactggagaaggaggag
ttcATGCACAGGCTGGCCTCGGCGAGGGTGCAGGGGATCACGAAGCCTCC
ACCCTctgtggaggagacgaaggaagaagcggcaAGCACAGTAGGAGGAG
ACCAGTCGCAGACCCAATCAGctaactcctcctcctcctcctcctcctcc
tcctcttcctcctcctcctcctcctcctcctcgtcttcgacCACGTACTc
ggatggaaaggaaaaaggaggtggagagacGAAAGCGGCCAAGGTGGATG
AAGCGACGCGTCACAGTGAGGTGTTGGCTGAAGTGATGAAATTGAAGATA
TCAGAAATCAAGAAGGAGCTGGACCTCCTCAAGATACCTCACTCCAGTTT
CTTCGAGAAGCGAGAGTTCGCGGAGGCTCTAGCGCGGGCCCGTCTcaacc
cgccctccaccactaGCAGGGGAGAGAACGTGGACCCGGACGAAGACCCA
AGCCAGTACCGATTCGTGGAGGTTAAGCGGATGCCtcgagaaggtggtgg
agagggagggcggaccggggggagagcaggtgcaggggcaggggcagggg
cagggggaggagatccgTTTTCAGATATGTTCAATccccgtggaggaggc
gcggcaTCGGGCAGTGGTGGAGGCTTTGCGGATGCATTTTTTAGGCAAGC
aggtggagcaggcggggcaagagggagtcCGTTTGGTGGGGGTGGGTTCG
GCGGTATGCCGGGAATGGGAGGCGTGGACCCGAGCATGCTCGCGTCCATC
ATGTCCAACCCGAGGGCCCAGGCCGCCTTCCAGCGCGCGCAACGGAACCC
GAAAGTGATGGCTGCCCTGCAGGACGTTATGGCGAACCCAGGAAATATTA
GCAAATACGCCAACGACAAGGAGATATCCAGCATTTTGAACGAGCTGCAG
TCCTTGTTCAAAAAATGAATGCGACGAAGGCACCTTGGAGCGATCATATT
GATATGCAGCGGCACATTATCGTCCGCTTTCACAGTCCCATTGCGGCCGT
GGGAATCTTGCGGCAGTGTGATTTATCCGCAGCGGCTCCCCCAGTCGGCA
CGGGCGATGTCGACGCTTGATGTAAGCAGCCGCAGAAGACCGGTGGGGTC
TTTTTTTAAGCGGGGGAGTGCGCTGCTCAGAGCAGCCGGTGCAGCAGcag
agacagggaaggaggtcgaCGCTACCAAGCTGGCCGCCGAGCTGACAGCG
ATCAAGCCCATGAAAATAAAGGAGATCAAggcggagttggaggagCGTGG
GGTGGATTGGAAGGATTtactggagaaggaggagttcATGCACAGGCTGG
CCTCGGCGAGGGTGCAGGGGATCACGAAGCCTCCACCCTctgtggaggag
acgaaggaagaagcggcaAGCACAGTAGGAGGAGACCAGTCGCAGACCCA
ATCAGctaactcctcctcctcctcctcctcctcctcctcttcctcctcct
cctcctcctcctcctcgtcttcgacCACGTACTcggatggaaaggaaaaa
ggaggtggagagacGAAAGCGGCCAAGGTGGATGAAGCGACGCGTCACAG
TGAGGTGTTGGCTGAAGTGATGAAATTGAAGATATCAGAAATCAAGAAGG
AGCTGGACCTCCTCAAGATACCTCACTCCAGTTTCTTCGAGAAGCGAGAG
TTCGCGGAGGCTCTAGCGCGGGCCCGTCTcaacccgccctccaccactaG
CAGGGGAGAGAACGTGGACCCGGACGAAGACCCAAGCCAGTACCGATTCG
TGGAGGTTAAGCGGATGCCtcgagaaggtggtggagagggagggcggacc
ggggggagagcaggtgcaggggcaggggcaggggcagggggaggagatcc
gTTTTCAGATATGTTCAATccccgtggaggaggcgcggcaTCGGGCAGTG
GTGGAGGCTTTGCGGATGCATTTTTTAGGCAAGCaggtggagcaggcggg
gcaagagggagtcCGTTTGGTGGGGGTGGGTTCGGCGGTATGCCGGGAAT
GGGAGGCGTGGACCCGAGCATGCTCGCGTCCATCATGTCCAACCCGAGGG
CCCAGGCCGCCTTCCAGCGCGCGCAACGGAACCCGAAAGTGATGGCTGCC
CTGCAGGACGTTATGGCGAACCCAGGAAATATTAGCAAATACGCCAACGA
CAAGGAGATATCCAGCATTTTGAACGAGCTGCAGTCCTTGTTCAAAAAAT
GA

Synonyms

Publications