rna8198, rna8198 (mRNA) Nannochloropsis gaditana

Overview
Namerna8198
Unique Namerna8198
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1052
Alignment locationKK037248.1:67957..69956 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g11.3491.mrna
Orig protein idgnl|cribi|Naga_100011g11.3491
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:67957..69956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g11gene7941Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22491.1cds8174Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8198rna8198-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8198 ID=rna8198|Name=rna8198|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp
AGGACGAGGAGCGGGGACTTATCACCCCACCCACTACCAGCAGTACCGGC
ACGTGTATTCGCCCCCCGAGTGGGCACCACACGCCCCTGGTAGTCCCGGA
GGCCTGGAGAGGGCGGCTCCGACCCTCGCGACGCCTGTCGCAGGGACCCC
CTGTCCCTCCTCCCGCCCGCCCCCTCCCCTAGGCTCCTCGCTCGGGCAGT
CTCATCCCGCCCCCAGCCCTCCTTCGCCAGCCCCGCCCCTCTTCCTGGAC
TCGTCCCTCCCTCACTCCTTCCAACCGCCCCTCCGCCCATCTCCCCGTCC
GAGACACCCCCAGCAACCTCCCTCGGCCTCCTTCCCCCCCATCCCCCTCT
ATTCCTACCCTGCCCAGCCCTCACCGCCGCCACCGCCCCGCACTGCGGGC
AGTCCTGGCGCCTCAAGACATGGGTGGGGCGCGGACGGGGCGTTTCGGCC
TCGGAGGGGTGGGAGCTTGCCGTATCCGGGCAGCCCGGCTGGCCACGCCC
CTCCCTACCCCCCTCCTGTCAGCCACGGGCAGCAGGCTAGCTGGCATTTG
CAGCAGCACCTGCCACCCCACCATCCTCACCAGTCACCGTCAGCGCAATA
TGCGGCGATGGCGCCCCAAGAGGCCGCCTTTCAAGTCCAGCATCCCTACC
AGCCGCCCGGTCCCTCCAACTATATGCCGGTACCGCACAACGGCCTCTTT
GTTCAACACAATCATCACCCCCAACAGCAGCAACAACACCACCGACAGCA
GCAGCAGCAGCAGCAACAGCAACAACAACAACAGCATCGACAAGAGCAGG
CACCCTAGCCGTCCTCACCCCCCTCGTTCCCGCATGGGCCGGAAGACAGG
ATCCAAGATGGTATCGGCGGGGCAGGACTCGAAGGCATGCGGGATAGGCT
ACTGAGACAAAAGCACAGATCATGCAGGCGGTGGGCTGGCGGGTGTGGGG
GAAGGGCGGGGGGGGGGATGCCCCGGTGGGACGGCGAATTGAGGGATGCA
GGGGGTGAGAGCGAGACCTTCTAATCATACAGAGAAGTTCCTCCTCGTAC
GT
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protein sequence of rna8198

>rna8198-protein ID=rna8198-protein|Name=rna8198|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MKPSSRRKQPARVSVSIPRVPFFSAAIAYVVVLCIPEAAPFVVPRPAIPP
LLVPQVTPVRVTRASASTPFSSSMRRQAHTVYSPPGWDREMYRPPDDVLF
EWQELVCCLKFMEEKEVNAGMLAPETRDMMIEYADALIAGGSPVRTLEGL
AEAMMGRWKLAFTTEERYKILPPGTRVYYHIHRDGRLENVMKFKDKYWDS
LISSATYNLTPQGRLLFEFSSNRVHINNPFQARAQWKIPLPPNVGNTGSA
FADVSYMDGVLWIEKIRDPGTEQVFVTIYEYQGPIEGEERTPSPSLSLSS
PPSSSSASSAGSLIAFLEGLEKEEQEELAEERRNEGEREGETSPPPADPS
ASGDPSVAPSSPPPSPSSSSSSPSSRVSA
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mRNA from alignment at KK037248.1:67957..69956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8198 ID=rna8198|Name=rna8198|organism=Nannochloropsis gaditana|type=mRNA|length=2000bp|location=Sequence derived from alignment at KK037248.1:67957..69956- (Nannochloropsis gaditana)
CGAGTCCAAGTCATATAGCAACTAAGCATATTGCTCCTTGGTACAGTAAG
ACGATGCCTGAGATGATGTTTAATCGGCCACATAAGCCCCGCGTGGGACA
TTTTTCCCATAAAGAGAAAGGGGGCGGGTTGAAGATACTAGATGGCTCCT
CGCTGCCTCCCTGGTGATGCCGTCATTGATCAGGGGGATTTCGCAAGGGA
AATACATCCATTAATAATCCAGGAAACGTACTGCAGCGCAAATCTCAGGT
GGCAAGATATTACGAGAAAGCATTTGCTGGGAATAATTCATAGTCATGCT
CACTTAGCATTTCCCATTTTTGTGCTTTTCCTGCTCACTGCGCTACCCTA
CTTTACAGCACACATAATTAATTCCTCCTCTCAGTGCCATGAAACCATCA
TCAAGAAGAAAACAGCCAGCTCGTGTAAGCGTATCTATACCACGAGTCCC
CTTCTTTTCTGCCGCCATCGCGTATGTCGTGGTCCTCTGCATACCGGAGG
CCGCCCCCTTTGTCGTTCCAAGGCCGGCTATCCCGCCACTACTCGTTCCG
CAAGTCACACCTGTTCGTGTCACGCGTGCCTCCGCTTCCACGCCTTTCTC
CTCGAGCATGCGGCGACAGGCGCACACGGTTTATTCCCCGCCCGGCTGGG
ACCGGGAAATGTATCGGCCCCCTGACGACGTGCTCTTCGAATGGCAAGAG
CTGGTGTGCTGCCTCAAATTCATGGAGGAGAAGGAGGTTAACGCCGGAAT
GCTGGCACCAGAGACCCGGGACATGATGATTGAGTACGCCGACGCGCTTA
TAGCGGGGGGCTCGCCTGTCCGGACTCTGGAGGGGTTGGCTGAGGCGATG
ATGGGGAGGTGGAAGCTGGCCTTCACCACCGAGGAGAGGTATAAGATCCT
GCCTCCCGGCACCCGGGTGTACTACCACATACACCGTGACGGCCGTCTGG
AAAATGTCATGAAATTCAAAGACAAGTACTGGGACAGCCTAATCTCCTCG
GCCACCTACAACCTGACGCCGCAGGGGCGCCTCCTCTTCGAGTTCTCCTC
GAATCGGGTCCACATCAACAACCCCTTTCAGGCACGCGCGCAATGGAAGA
TTCCTTTGCCTCCTAACGTCGGGAACACGGGCTCGGCCTTTGCGGACGTG
AGCTACATGGACGGGGTCCTGTGGATCGAGAAGATCCGGGATCCTGGAAC
GGAGCAGGTCTTCGTGACCATCTACGAGTACCAGGGGCCGATCGAAGGGG
AGGAGCGGACGCCTTCGCCCTCCCTCTCCCTTTCCTCCCCGCCTTCCTCG
TCCTCTGCGTCCTCCGCCGGCTCTCTAATAGCCTTTCTGGAGGGTCTGGA
GAAGGAAGAGCAGGAGGAGCTCGCCGAGGAGAGGCGGAACGAGGGGGAGA
GGGAGGGGGAGACCTCTCCTCCTCCCGCTGACCCCTCGGCCTCTGGCGAC
CCTAGTGTGGCTCCCTCCTCCCCCCCTCCCTCCCCCTCCTCTTCTTCCTC
CTCCCCTTCCTCCCGAGTGTCTGCTTGATGAGGGGGAGGGAGAAAGGACC
TCTGCCAAGGGCCTGAGAGGGCGTGAGGGTAGGGTGCGACGGACGGAGAG
AGCGGGCGACTTAAATGCAAGCGAACACGAAGAAGGCAAATCAAAGAAAG
AGGAAACGCACAACGTACGAGGAGGAACTTCTCTGTATGATTAGAAGGTC
TCGCTCTCACCCCCTGCATCCCTCAATTCGCCGTCCCACCGGGGCATCCC
CCCCCCCGCCCTTCCCCCACACCCGCCAGCCCACCGCCTGCATGATCTGT
GCTTTTGTCTCAGTAGCCTATCCCGCATGCCTTCGAGTCCTGCCCCGCCG
ATACCATCTTGGATCCTGTCTTCCGGCCCATGCGGGAACGAGGGGGGTGA
GGACGGCTAGGGTGCCTGCTCTTGTCGATGCTGTTGTTGTTGTTGCTGTT
GCTGCTGCTGCTGCTGCTGTCGGTGGTGTTGTTGCTGCTGTTGGGGGTGA
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Coding sequence (CDS) from alignment at KK037248.1:67957..69956-

>rna8198 ID=rna8198|Name=rna8198|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at KK037248.1:67957..69956- (Nannochloropsis gaditana)
ATGAAACCATCATCAAGAAGAAAACAGCCAGCTCGTGTAAGCGTATCTAT
ACCACGAGTCCCCTTCTTTTCTGCCGCCATCGCGTATGTCGTGGTCCTCT
GCATACCGGAGGCCGCCCCCTTTGTCGTTCCAAGGCCGGCTATCCCGCCA
CTACTCGTTCCGCAAGTCACACCTGTTCGTGTCACGCGTGCCTCCGCTTC
CACGCCTTTCTCCTCGAGCATGCGGCGACAGGCGCACACGGTTTATTCCC
CGCCCGGCTGGGACCGGGAAATGTATCGGCCCCCTGACGACGTGCTCTTC
GAATGGCAAGAGCTGGTGTGCTGCCTCAAATTCATGGAGGAGAAGGAGGT
TAACGCCGGAATGCTGGCACCAGAGACCCGGGACATGATGATTGAGTACG
CCGACGCGCTTATAGCGGGGGGCTCGCCTGTCCGGACTCTGGAGGGGTTG
GCTGAGGCGATGATGGGGAGGTGGAAGCTGGCCTTCACCACCGAGGAGAG
GTATAAGATCCTGCCTCCCGGCACCCGGGTGTACTACCACATACACCGTG
ACGGCCGTCTGGAAAATGTCATGAAATTCAAAGACAAGTACTGGGACAGC
CTAATCTCCTCGGCCACCTACAACCTGACGCCGCAGGGGCGCCTCCTCTT
CGAGTTCTCCTCGAATCGGGTCCACATCAACAACCCCTTTCAGGCACGCG
CGCAATGGAAGATTCCTTTGCCTCCTAACGTCGGGAACACGGGCTCGGCC
TTTGCGGACGTGAGCTACATGGACGGGGTCCTGTGGATCGAGAAGATCCG
GGATCCTGGAACGGAGCAGGTCTTCGTGACCATCTACGAGTACCAGGGGC
CGATCGAAGGGGAGGAGCGGACGCCTTCGCCCTCCCTCTCCCTTTCCTCC
CCGCCTTCCTCGTCCTCTGCGTCCTCCGCCGGCTCTCTAATAGCCTTTCT
GGAGGGTCTGGAGAAGGAAGAGCAGGAGGAGCTCGCCGAGGAGAGGCGGA
ACGAGGGGGAGAGGGAGGGGGAGACCTCTCCTCCTCCCGCTGACCCCTCG
GCCTCTGGCGACCCTAGTGTGGCTCCCTCCTCCCCCCCTCCCTCCCCCTC
CTCTTCTTCCTCCTCCCCTTCCTCCCGAGTGTCTGCTTGA
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Synonyms
Publications