rna8196, rna8196 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8196
Unique Name	rna8196
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1898
Alignment location	KK037248.1:64285..66034 -

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Properties


Property Name	Value
Product	ribonuclease p protein subunit p30
Orig transcript id	gnl\|cribi\|Naga_100011g9.3442.mrna
Orig protein id	gnl\|cribi\|Naga_100011g9.3442
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:64285..66034 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g9	gene7939	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22442.1	cds8172	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8196	rna8196-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:64285..66034-
coding sequence from alignment at KK037248.1:64285..66034-

mRNA sequence

>rna8196 ID=rna8196|Name=rna8196|organism=Nannochloropsis gaditana|type=mRNA|length=1898bp
GCATGTTCTCTTACAACGATAGAGAGAAGACAAAGAATGGGCAAATGTCA
GTTTAGATGGGTTTTCCATACTACCCTGTCGCGGGTCTGTGTACTGACAT
GGGTCCATCTCCCGGAGGGGCCCTCTATCACGTCGCAGGTAACACACGGC
TAATTTAAATTCTGGTGCGAGGGTTTGAACTGGTCATGCCGCCACTCATG
AAGACCTCGCCTTCATTCACCATTGCTTTGTAAAACAGAGGGATGCAAGG
CCTGATTGAAGAAGTCTCTGCGGCCACAGCCGATTGTCCTTCCTCCCCCG
CGAAGGAGCACTTCAGTGACCGTGGCGAGGACGAAGTGATCCATGAGGAG
ACGACAGCCTCGCATCCCCCCTCCCCTGACACAGCGGGAAGCGCCACAGA
CTCGCTCATTCGAAGCTTGATGGAGGAACTGAGTGCTGCCAAGGAAGAAA
TTGCCCGTCTGACGAAAGAACGCGCCTATTTTAAGCGCAAAGCCGAATGG
TGTACCATCGAAGATCAACGCATTCTCTCGCCCGTCATCACGAGCACGGA
CCATTGGCAAGAAAGAACTTGGCTCTTGCTGCACGAGCCCATACGCAGCG
CTCTATTGGATTTCGAAGAACTAGTTGCGTCGCCCTCCTTCGATCCAGTG
CAGTACCCTTGGAAAGTGACCAATTTTTTCTACTTCTTCAACACGGCCTT
CGCTCCCTATGTCCGTCGGCACCATCAGGTGGAGCAAAAGATTTACATTC
CCTGGGTGGCCGGTAAAACGGAGATTCCGGACGAGGTCAGAGGAGGATAT
GATGGAATCGAAGAGTTGATACAAGAGGTGGAGGCCAGCGAGGCCGAATA
CAAGTCCTTGGAGAGAGCGATCCGAAAGGGGAAAATCCCACCGGCGAGCG
TGGAGACAAGCGTGGTTCGGTCCGACACCTCGGCCCCGTCTACCTTGGGT
CCCTTGTCGCAGGGGCATGAGAATATAAAGGCGAAGAACAGGGAGAAGGC
TCCTGACGAGGAGGGCGGGCCTGCGTCGGCCCCTGCCTCCCTGCCTGCCA
CGTCCCTGGCATCCGCTCCTGCTCCATCCCCCAAGAATACCCCGCTATCT
AGCAGGTCTCTCTACGACTGGCGCCGTCGCCTCATAGCACGCCTGGACCG
CCTCTCCCACCATCTCATCGTCCACATGGACCAGGAGGAATCCTTCTTTC
CCCCCGCCGTCCTCCGCTACTTCTCCCAACACGAGGAGGAGCGGATCCTC
GAACAAATGTCCTCGGCCAGCGCCGCCCACTTGGAGCTCCCCATGGTGCT
ACTGGCCATGGACGTGTGGGGGTCTCCGGAGACGAAGGCGGCCTTCCTGA
AGAAGCTCTCACGGGCTGCCCGCTACACCCTCAACACGTACTGGCTTTCC
TCCTACAAGAAGAGCGTGGCCCGCTCCCTCGAGTCCCTGGCCCTGCAAGA
GCCCCCGCCCACGGTCTACCTGCCCCACATGTCTGTGAACCAGCTCCTGG
TCGCGGCCCCCGTCTTCTTGCTCTGCACGATCAGCTGACCCGGCCTGGGG
GCTGGGCGATGGCCTCGTCGGAAAGGGCCAAAGGGCGGGCGTGGGGGGTA
TAGGCGGTGGAGCTTGCATGGGAGGTTTCATAGGGTGGGCGGTGTGTGTG
CAGATGGTGGGGCGGGAGGGTGAAGAGTGTACATGCACGGGATATTCGTC
GCTAGAAGGGACATTGCTGAAAGGAAAGCGTACGCGTTTTAGATGCTTCG
GTTTTAAGGTTTTGACCGACGTCCCCCACTTTCATTGGCGCTTCCTCACG
CCTTCAAGATCACGCCTTCAAGATCCTCAAATGCTCTCGTACCCCGTCAG
CACCTGCCAATCTCCCTCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCC

protein sequence of rna8196

>rna8196-protein ID=rna8196-protein|Name=rna8196|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSG
ADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDG
VRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCG
AIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQA
DAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSG
SSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRL
EWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC

mRNA from alignment at KK037248.1:64285..66034-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8196 ID=rna8196|Name=rna8196|organism=Nannochloropsis gaditana|type=mRNA|length=1750bp|location=Sequence derived from alignment at KK037248.1:64285..66034- (Nannochloropsis gaditana)
CGCAGCCATTGCCGCCACTGCCAGATCATCAACCTCCTCCTCCTCCTCCT
CCGCCTCCCCCTCACTATCGTCCTCTTCTCGTTCCTCTCCCCCCTCATCG
TCCTCCTCTTCATCCTCATTCTCCTCGTCACTGCTGCTATTCACCCGCTC
TTCCTCCATTCCATTTCTAGCCTCCTCCGTCTCGTCATTGTCTCTGACGT
TGTTGCCATGAATGCTGGACATAGCAATGGGCGTCTTTTGTTCGTCTCTT
CGTGTGCAGGCGGTACCCTTAATGCTCTCCCCTCGTGCCTCCCTAGGACC
CTTCGAGTCGTCCCCCGCCATCGTCAAGCCCTTCCCCTGCCCCGTTTCCG
TGCACTCGTTTCCTTGCCCGCAAACATCAGCCACTACATTCTCCTCCTGC
ATGAATGTCTTGAGGATAGCAAGATGATGTGTTGCTTGACGAATGAGTGC
ATGGAATTCCGTTTCAAAAAGCAAATTTAGAGACGTAGTATCTTGAGCGA
CCTCCCGGTGGGGCGTACTACTACTAGTAGTACTAGTAGAAACAACCTCT
TTCGCTTACTGTCAAGTCCCTCAAACACATGCGCAGGTGGCGTGCAAACA
TAACAAATCGAAATAGTGGACATTGCTCAGGAAGGCGAATGTCATGTTCT
TTGCAGCAAGTCAGTGCCGGTTCACCCGACGGTCCATGTAAAGTCATTAC
CAAACGGAAGCGTCAAAGGTCTTCAGGGGCGGACGCGCAAAAATGCTTCC
ACGACTTATGCATCGATATTCCCCACCACAATACCACTGTGGAGCACGTC
CGAGAGGCTACACGTCGCCTTGGCCACCTCGGCTACGCCTGTGTGGCTTT
CAATGAAACTGTGGTCGGTCGCGACGGCGTCCGGGGGCTCGACCGTCCCG
CCTCCCTGAAAACTCGGAGGCCCCTCTGGCTGGCCGCTCGGGGAGGGCTT
GCCGACAAGCCTGAGGTACGCTTGCGTAGGGTCACGGTCGTCGTGCACGA
CAAAGGAGAAGCACAATTTTTGTGCGGAGCCATCCGCAGTGTAAAATGGG
CGGATCTGGTGGCAGCGCGTCCTACCTCAGACCAAGCTTTGCAGCTTTTG
TGCGAGGCCGGAGACGTGGACATAATATCTCTGGATATAAGCGCTCGGAT
GGGGTTCTCCTTGAGCACATCTCAAGCGGATGCCGCGCGAGCCCGTGGGA
TCGCCTTTGAAGTGCAGTACGCGGGGTTGATATCGGAGGAGAACTTGGTG
AAACGGCAACAACTCATGGCGAACACGAGCGGTGTGCTGGGAGCTACTCG
AGGCAGGGGGGTCGTATGGAGCAGCGGGAGCAGCGCGAGGGCGGCCTGGG
ACACGCTTCGTGGGCCGTACGACGTGATGAACTTGGCGGTGGTTTTGGGG
TTGAGGGAGGAGCCGGCGCTCAGGTCGTTGACAGGCTCATGCCAGGAGGC
GCGTGGACACGCCCAGGCGCGGCGCTTGGAGTGGTTGCCCGCCGAGGTGA
AGTGGGCAGGAGGTAGCGACGGGGGAGGGAGTGAAGGGAAAGTGGGGAAG
GAGGGGGAAGTGGCGGGAGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGGG
GGAGGAGGAGAGGGAGATTGGCAGGTGCTGACGGGGTACGAGAGCATTTG
AGGATCTTGAAGGCGTGATCTTGAAGGCGTGAGGAAGCGCCAATGAAAGT
GGGGGACGTCGGTCAAAACCTTAAAACCGAAGCATCTAAAACGCGTACGC

Coding sequence (CDS) from alignment at KK037248.1:64285..66034-

>rna8196 ID=rna8196|Name=rna8196|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at KK037248.1:64285..66034- (Nannochloropsis gaditana)
ATGCGCAGGTGGCGTGCAAACATAACAAATCGAAATAGTGGACATTGCTC
AGGAAGGCGAATGTCATGTTCTTTGCAGCAAGTCAGTGCCGGTTCACCCG
ACGGTCCATGTAAAGTCATTACCAAACGGAAGCGTCAAAGGTCTTCAGGG
GCGGACGCGCAAAAATGCTTCCACGACTTATGCATCGATATTCCCCACCA
CAATACCACTGTGGAGCACGTCCGAGAGGCTACACGTCGCCTTGGCCACC
TCGGCTACGCCTGTGTGGCTTTCAATGAAACTGTGGTCGGTCGCGACGGC
GTCCGGGGGCTCGACCGTCCCGCCTCCCTGAAAACTCGGAGGCCCCTCTG
GCTGGCCGCTCGGGGAGGGCTTGCCGACAAGCCTGAGGTACGCTTGCGTA
GGGTCACGGTCGTCGTGCACGACAAAGGAGAAGCACAATTTTTGTGCGGA
GCCATCCGCAGTGTAAAATGGGCGGATCTGGTGGCAGCGCGTCCTACCTC
AGACCAAGCTTTGCAGCTTTTGTGCGAGGCCGGAGACGTGGACATAATAT
CTCTGGATATAAGCGCTCGGATGGGGTTCTCCTTGAGCACATCTCAAGCG
GATGCCGCGCGAGCCCGTGGGATCGCCTTTGAAGTGCAGTACGCGGGGTT
GATATCGGAGGAGAACTTGGTGAAACGGCAACAACTCATGGCGAACACGA
GCGGTGTGCTGGGAGCTACTCGAGGCAGGGGGGTCGTATGGAGCAGCGGG
AGCAGCGCGAGGGCGGCCTGGGACACGCTTCGTGGGCCGTACGACGTGAT
GAACTTGGCGGTGGTTTTGGGGTTGAGGGAGGAGCCGGCGCTCAGGTCGT
TGACAGGCTCATGCCAGGAGGCGCGTGGACACGCCCAGGCGCGGCGCTTG
GAGTGGTTGCCCGCCGAGGTGAAGTGGGCAGGAGGTAGCGACGGGGGAGG
GAGTGAAGGGAAAGTGGGGAAGGAGGGGGAAGTGGCGGGAGAGGGGGAAG
AGGAGGGGGAGGAGGAGGAGGGGGAGGAGGAGAGGGAGATTGGCAGGTGC
TGA

Synonyms

Publications