EWM22442.1, cds8172 (CDS) Nannochloropsis gaditana

Overview
NameEWM22442.1
Unique Namecds8172
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:64404..65456 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22442.1
Productribonuclease p protein subunit p30
Orig transcript idgnl|cribi|Naga_100011g9.3442.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:64404..65456 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003824catalytic activity
GO:0004540ribonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR016195Pol/histidinol_Pase-like
IPR002738RNase_P_p30
Homology
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|585102948|gb|EWM22442.1| (ribonuclease p protein subunit p30 [Nannochloropsis gaditana])

HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC 350
            MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC
Sbjct:    1 MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC 350          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|669153062|ref|XP_008612093.1| (hypothetical protein SDRG_08005 [Saprolegnia diclina VS20] >gi|530736445|gb|EQC34687.1| hypothetical protein SDRG_08005 [Saprolegnia diclina VS20])

HSP 1 Score: 131.724 bits (330), Expect = 1.327e-32
Identity = 88/235 (37.45%), Postives = 125/235 (53.19%), Query Frame = 0
Query:   81 LGHLGYACVAFNETVVGRDGVRGLDRPASL---------KTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRS---VKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDT-LRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLE 301
            +  LGY C+A N   V  DG +    P SL         KT+  L     GG    P VR L+R+T+   D   A     AI S   ++  D+VA  PTS +  Q  CE GDVDII+LD+S+R+ F L     DAA ARGI FE++Y   + + +   R+   AN S ++  TRGR +V+ SG    AA D  LR PYDV+N+ ++LGL    A+ +++ SC     H + R+++
Sbjct:   24 MARLGYGCMALN---VENDGTKPPRAPESLAPWSLESGRKTKTQLHGLRIGGENPPPAVRQLKRITLQCDDMNAAH----AINSNPVIRAYDIVAVEPTSTRLFQFFCEQGDVDIITLDVSSRLSFQLRKPLVDAAIARGIYFELKYTAALGDSS--GRRYFFANASSLIRITRGRHIVFGSG----AARDMLLRSPYDVINIGMLLGLPYGKAMDAVSSSCAAVIAHGEVRKVK 245          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183320841|gb|ORX50653.1| (PHP domain-like protein [Piromyces finnis])

HSP 1 Score: 124.02 bits (310), Expect = 1.322e-29
Identity = 70/252 (27.78%), Postives = 126/252 (50.00%), Query Frame = 0
Query:   73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
            ++++    L   GY  VAFN T+ G+    G           P+         +K +++   R+T++++D  +   L     ++   D++A +P +++  QL C   D+DIISLD S R+ F L     + A  RGI FE+ Y+  + + N   R+ L++N + +   TRG+ ++ S  S A+ A + +RGPYD++NL+ + GL +  A   +T +C++   H++ R+           L+ L  E  W  G
Sbjct:   24 NLKKILNMLQKFGYEAVAFNNTISGKIPNNG---------SNPIQTIPIDTSDNKKDIKQYSRLTIIMNDASQNYSLNSNNETISAYDIIAIQPQNEKIFQLACSVLDIDIISLDFSTRLPFYLKLPMVNLAIERGIHFEINYSVSLRDNN--ARKHLISNAANLARVTRGKNIIIS--SEAQKALE-IRGPYDIINLSSIFGLNQALAKNCITSNCRKVLLHSKTRKNIHKGVVSISTLDELEPEESWKAG 261          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|669153064|ref|XP_008612094.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530736446|gb|EQC34688.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 122.094 bits (305), Expect = 3.096e-29
Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 0
Query:   96 VGRDGVRGLDRPASL---------KTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRS---VKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDT-LRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLE 301
            V  DG +    P SL         KT+  L     GG    P VR L+R+T+   D   A     AI S   ++  D+VA  PTS +  Q  CE GDVDII+LD+S+R+ F L     DAA ARGI FE++Y   + + +   R+   AN S ++  TRGR +V+ SG    AA D  LR PYDV+N+ ++LGL    A+ +++ SC     H + R+++
Sbjct:    5 VENDGTKPPRAPESLAPWSLESGRKTKTQLHGLRIGGENPPPAVRQLKRITLQCDDMNAAH----AINSNPVIRAYDIVAVEPTSTRLFQFFCEQGDVDIITLDVSSRLSFQLRKPLVDAAIARGIYFELKYTAALGDSS--GRRYFFANASSLIRITRGRHIVFGSG----AARDMLLRSPYDVINIGMLLGLPYGKAMDAVSSSCAAVIAHGEVRKVK 214          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|909128067|gb|KNE55225.1| (hypothetical protein AMAG_01138 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 123.635 bits (309), Expect = 3.240e-29
Identity = 95/292 (32.53%), Postives = 148/292 (50.68%), Query Frame = 0
Query:   71 VEHVREATRRLGHLGYACVAFNETVVGR------DGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEW-----------LPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEE 344
            V+  R+    L  LG+  VAFN+ V G+      + V  +D P   K+   L + ARG    K +++ L RVTVV+ D  +   L  A  ++   DL+A  PTS++     C+  + DIISLD+S R+ F    S    A  RGI  E+ Y+    ++N  KR  L+AN + ++   +GR V+ SSG  A+   +T RGP DV+NL  +LG+ ++ A  +++ +C+ A  HA+ RR  +           +P E  W  G   GG++  VG         E E EE++  E+
Sbjct:   20 VDAARKTAADLVALGFHVVAFNQVVQGKVPINLTNNVELVD-PVEWKSDAQLIMTARG--QGKQQIKQLSRVTVVLEDPSQVSSLSTAASNLSQFDLLAVCPTSEKLWAACCQTVECDIISLDLSQRLPFHFKHSMVGEAVRRGIMIEIAYSAAF-KDNTAKR-NLIANATNLMRVCKGRNVILSSG--AKTVLET-RGPLDVVNLGCLLGMSQDDAKHAISTNCRAALIHAETRRKTFRAAVTYEPVGDVPDEAAWTVGL--GGADDFVG------FGNESESEEDDAMED 295          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183456593|gb|ORY80649.1| (PHP domain-like protein [Neocallimastix californiae])

HSP 1 Score: 122.479 bits (306), Expect = 5.211e-29
Identity = 72/252 (28.57%), Postives = 128/252 (50.79%), Query Frame = 0
Query:   73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
            ++++    L   GY  VAFN T+ G+     +   AS     P+         +K +++   R+T+++ D  +   L     ++   D++A +P +++  Q+ C   D+DIISLD S+R+ F L     + A  RGI FE+ Y+   S  ++  R+ L++N + ++  TRG+ ++ S  S A+ A + +RGPYD++NLA + GL +  A   LT +C+    H++ R+           L+ L  E  W  G
Sbjct:   24 NLKKILNILQKFGYEAVAFNNTITGK-----IPNNAS----NPIQQIPIDTSDNKKDIKQYTRITIIISDASQNYALNSNNETINSYDILAVQPQNEKIFQMACSVLDIDIISLDFSSRLPFYLKLPMINLAIERGIHFEINYSA--SLRDVSARKHLISNAANLVRVTRGKNIIIS--SEAQKALE-IRGPYDIINLASIFGLNQALAKNCLTRNCRSVILHSKTRKSIHKGVVSITTLDELEPEESWKAG 261          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|909133550|gb|KNE59868.1| (hypothetical protein AMAG_05321 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 122.479 bits (306), Expect = 8.144e-29
Identity = 93/290 (32.07%), Postives = 143/290 (49.31%), Query Frame = 0
Query:   71 VEHVREATRRLGHLGYACVAFNETVVGRDGVR-----GLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEW-----------LPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEE 344
            V+  R+    L  LGY  VA N+ V G+  +       L  P   K    L + ARG    +   +L RVTVV+ D  +   L  A  ++   DL+A  PTS++     C+  + DIISLD+S R+ F    S    A  RGI  E+ Y+    ++N  KR  L+AN + ++   +GR ++ SSG  A+   +T RGP DV+NL  +LG+ ++ A  +++ +C+ A  HA+ RR  +           +PAE  W  G   GG++  VG         E E EE++  E+
Sbjct:   20 VDAARKTAADLVALGYHVVALNQVVQGKVPINLTNNIELVDPVEWKCDAQLVMTARGQ-GKQLIKQLSRVTVVLEDPSQISSLSTAATNLNQFDLLAVCPTSEKLWAACCQTVECDIISLDLSQRLPFHFKHSMVGEAVRRGIMIEIAYSAAF-KDNTAKR-NLIANATNLMRVCKGRNIILSSG--AKTVLET-RGPLDVVNLGCLLGMNQDDAKHAISTNCRAALIHAETRRKTFRAAVTFEPVGDVPAEASWTVGL--GGADDFVG------FGNESESEEDDAMED 295          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183375808|gb|ORY01412.1| (ribonuclease P protein subunit p30 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 119.398 bits (298), Expect = 6.199e-28
Identity = 81/248 (32.66%), Postives = 126/248 (50.81%), Query Frame = 0
Query:   57 FHDLCID----IPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR 299
            FHDL I     +    T ++ +R+       LGY  VA N TVVG+ G   ++        R + +    G   +   R L R++VVV D  +   L      V   D+VA +PT+++  Q  C   +VDIISL++S R+ F L  S    A  RGI FE+ Y+  I +     R+ L++N   ++  TRG+ ++ +  S A+ A + LRGPYD++NL  + GL +  A   LT +C+    H++ RR
Sbjct:    2 FHDLNISNDSKLKAGETQLDSLRKRLELCSELGYEVVALNNTVVGKIGQNNVN------PFRKMDIPDVSGKGFRKNFRVLSRLSVVVEDISQNYELNANNPVVSSYDIVAVQPTTEKLFQAACGTFEVDIISLELSTRLPFYLKHSTVGLAIERGIHFEISYSACIKDS--TARRHLISNAINLIRVTRGKNIIVT--SEAQRAME-LRGPYDIINLCSLFGLNQAAARDCLTINCRSVIYHSETRR 238          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183498311|gb|ORZ21959.1| (RNase P subunit p30-domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 118.627 bits (296), Expect = 1.550e-27
Identity = 75/228 (32.89%), Postives = 117/228 (51.32%), Query Frame = 0
Query:   75 REATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLR---RVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR 299
            R+    L HLGY  VA+N  V G+ G   ++    L               + P + L+   R+T+VV D  +   L     ++   D++A +PT+++  Q  C   +VDIISLD+SAR+ F L  S    A  RGI FE+ Y+  I + +   R+ L++N   ++  TRG+ ++ SS  + RA    LRGPYD++N   +LGL +  A   L+  C+    HA+ RR
Sbjct:   26 RKRVELLNHLGYQAVAYNHEVTGKIGNNHINPITKL---------------NLPGINLKQYSRLTLVVDDVSQNYGLNTGNPTISSYDIIAVQPTNEKLFQAACGTFEVDIISLDMSARLPFYLKHSTVGLAIERGIYFELCYSAAIRDAS--ARRNLISNAQSLIRVTRGKNIILSS-QAMRAM--ELRGPYDIVNFGTLLGLNQATAKDCLSSHCRAVAMHAETRR 233          
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1198310993|gb|OUM67631.1| (hypothetical protein PIROE2DRAFT_4922 [Piromyces sp. E2])

HSP 1 Score: 118.627 bits (296), Expect = 1.867e-27
Identity = 71/255 (27.84%), Postives = 127/255 (49.80%), Query Frame = 0
Query:   73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAV---VLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
            ++++    L   GY  VAFN T+ G+    G           P+         +K +++   R+T++++D  +   L     ++   D++A +P +++  Q+ C   DVDIISLD S+R+ F L     + A  RGI FE+ Y   + + +   R+ L++N + ++  TRG+ ++ S  S A+ A + +RGPYD++NL V   + GL +  A   LT +C++   H++ R+           L+ L  E  W  G
Sbjct:   24 NLKKILNMLQKFGYEAVAFNNTISGKIPNNG---------SNPIQHFPIDTSDNKKDIKQYSRLTIIINDASQNYALNSNNETISAYDILAVQPQNEKIFQIACSVLDVDIISLDFSSRLPFYLKLPMVNLAIERGIHFEITYGASLRDNS--ARKYLISNAANLVRVTRGKNIIIS--SEAQKALE-IRGPYDIINLLVQSSIFGLNQALAKNCLTNNCRKVLLHSKTRKSIHKGVVSISTLDELEPEESWKAG 264          
The following BLAST results are available for this feature:
BLAST of EWM22442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102948|gb|EWM22442.1|0.000e+0100.00ribonuclease p protein subunit p30 [Nannochloropsi... [more]
gi|669153062|ref|XP_008612093.1|1.327e-3237.45hypothetical protein SDRG_08005 [Saprolegnia dicli... [more]
gi|1183320841|gb|ORX50653.1|1.322e-2927.78PHP domain-like protein [Piromyces finnis][more]
gi|669153064|ref|XP_008612094.1|3.096e-2937.27hypothetical protein, variant [Saprolegnia diclina... [more]
gi|909128067|gb|KNE55225.1|3.240e-2932.53hypothetical protein AMAG_01138 [Allomyces macrogy... [more]
gi|1183456593|gb|ORY80649.1|5.211e-2928.57PHP domain-like protein [Neocallimastix california... [more]
gi|909133550|gb|KNE59868.1|8.144e-2932.07hypothetical protein AMAG_05321 [Allomyces macrogy... [more]
gi|1183375808|gb|ORY01412.1|6.199e-2832.66ribonuclease P protein subunit p30 [Basidiobolus m... [more]
gi|1183498311|gb|ORZ21959.1|1.550e-2732.89RNase P subunit p30-domain-containing protein [Lob... [more]
gi|1198310993|gb|OUM67631.1|1.867e-2727.84hypothetical protein PIROE2DRAFT_4922 [Piromyces s... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8196rna8196Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications