EWM22442.1, cds8172 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|585102948|gb|EWM22442.1| (ribonuclease p protein subunit p30 [Nannochloropsis gaditana]) HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query: 1 MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC 350
MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC
Sbjct: 1 MRRWRANITNRNSGHCSGRRMSCSLQQVSAGSPDGPCKVITKRKRQRSSGADAQKCFHDLCIDIPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEWLPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEEREIGRC 350
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|669153062|ref|XP_008612093.1| (hypothetical protein SDRG_08005 [Saprolegnia diclina VS20] >gi|530736445|gb|EQC34687.1| hypothetical protein SDRG_08005 [Saprolegnia diclina VS20]) HSP 1 Score: 131.724 bits (330), Expect = 1.327e-32 Identity = 88/235 (37.45%), Postives = 125/235 (53.19%), Query Frame = 0
Query: 81 LGHLGYACVAFNETVVGRDGVRGLDRPASL---------KTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRS---VKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDT-LRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLE 301
+ LGY C+A N V DG + P SL KT+ L GG P VR L+R+T+ D A AI S ++ D+VA PTS + Q CE GDVDII+LD+S+R+ F L DAA ARGI FE++Y + + + R+ AN S ++ TRGR +V+ SG AA D LR PYDV+N+ ++LGL A+ +++ SC H + R+++
Sbjct: 24 MARLGYGCMALN---VENDGTKPPRAPESLAPWSLESGRKTKTQLHGLRIGGENPPPAVRQLKRITLQCDDMNAAH----AINSNPVIRAYDIVAVEPTSTRLFQFFCEQGDVDIITLDVSSRLSFQLRKPLVDAAIARGIYFELKYTAALGDSS--GRRYFFANASSLIRITRGRHIVFGSG----AARDMLLRSPYDVINIGMLLGLPYGKAMDAVSSSCAAVIAHGEVRKVK 245
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183320841|gb|ORX50653.1| (PHP domain-like protein [Piromyces finnis]) HSP 1 Score: 124.02 bits (310), Expect = 1.322e-29 Identity = 70/252 (27.78%), Postives = 126/252 (50.00%), Query Frame = 0
Query: 73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
++++ L GY VAFN T+ G+ G P+ +K +++ R+T++++D + L ++ D++A +P +++ QL C D+DIISLD S R+ F L + A RGI FE+ Y+ + + N R+ L++N + + TRG+ ++ S S A+ A + +RGPYD++NL+ + GL + A +T +C++ H++ R+ L+ L E W G
Sbjct: 24 NLKKILNMLQKFGYEAVAFNNTISGKIPNNG---------SNPIQTIPIDTSDNKKDIKQYSRLTIIMNDASQNYSLNSNNETISAYDIIAIQPQNEKIFQLACSVLDIDIISLDFSTRLPFYLKLPMVNLAIERGIHFEINYSVSLRDNN--ARKHLISNAANLARVTRGKNIIIS--SEAQKALE-IRGPYDIINLSSIFGLNQALAKNCITSNCRKVLLHSKTRKNIHKGVVSISTLDELEPEESWKAG 261
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|669153064|ref|XP_008612094.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530736446|gb|EQC34688.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 122.094 bits (305), Expect = 3.096e-29 Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 0
Query: 96 VGRDGVRGLDRPASL---------KTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRS---VKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDT-LRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLE 301
V DG + P SL KT+ L GG P VR L+R+T+ D A AI S ++ D+VA PTS + Q CE GDVDII+LD+S+R+ F L DAA ARGI FE++Y + + + R+ AN S ++ TRGR +V+ SG AA D LR PYDV+N+ ++LGL A+ +++ SC H + R+++
Sbjct: 5 VENDGTKPPRAPESLAPWSLESGRKTKTQLHGLRIGGENPPPAVRQLKRITLQCDDMNAAH----AINSNPVIRAYDIVAVEPTSTRLFQFFCEQGDVDIITLDVSSRLSFQLRKPLVDAAIARGIYFELKYTAALGDSS--GRRYFFANASSLIRITRGRHIVFGSG----AARDMLLRSPYDVINIGMLLGLPYGKAMDAVSSSCAAVIAHGEVRKVK 214
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|909128067|gb|KNE55225.1| (hypothetical protein AMAG_01138 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 123.635 bits (309), Expect = 3.240e-29 Identity = 95/292 (32.53%), Postives = 148/292 (50.68%), Query Frame = 0
Query: 71 VEHVREATRRLGHLGYACVAFNETVVGR------DGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEW-----------LPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEE 344
V+ R+ L LG+ VAFN+ V G+ + V +D P K+ L + ARG K +++ L RVTVV+ D + L A ++ DL+A PTS++ C+ + DIISLD+S R+ F S A RGI E+ Y+ ++N KR L+AN + ++ +GR V+ SSG A+ +T RGP DV+NL +LG+ ++ A +++ +C+ A HA+ RR + +P E W G GG++ VG E E EE++ E+
Sbjct: 20 VDAARKTAADLVALGFHVVAFNQVVQGKVPINLTNNVELVD-PVEWKSDAQLIMTARG--QGKQQIKQLSRVTVVLEDPSQVSSLSTAASNLSQFDLLAVCPTSEKLWAACCQTVECDIISLDLSQRLPFHFKHSMVGEAVRRGIMIEIAYSAAF-KDNTAKR-NLIANATNLMRVCKGRNVILSSG--AKTVLET-RGPLDVVNLGCLLGMSQDDAKHAISTNCRAALIHAETRRKTFRAAVTYEPVGDVPDEAAWTVGL--GGADDFVG------FGNESESEEDDAMED 295
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183456593|gb|ORY80649.1| (PHP domain-like protein [Neocallimastix californiae]) HSP 1 Score: 122.479 bits (306), Expect = 5.211e-29 Identity = 72/252 (28.57%), Postives = 128/252 (50.79%), Query Frame = 0
Query: 73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
++++ L GY VAFN T+ G+ + AS P+ +K +++ R+T+++ D + L ++ D++A +P +++ Q+ C D+DIISLD S+R+ F L + A RGI FE+ Y+ S ++ R+ L++N + ++ TRG+ ++ S S A+ A + +RGPYD++NLA + GL + A LT +C+ H++ R+ L+ L E W G
Sbjct: 24 NLKKILNILQKFGYEAVAFNNTITGK-----IPNNAS----NPIQQIPIDTSDNKKDIKQYTRITIIISDASQNYALNSNNETINSYDILAVQPQNEKIFQMACSVLDIDIISLDFSSRLPFYLKLPMINLAIERGIHFEINYSA--SLRDVSARKHLISNAANLVRVTRGKNIIIS--SEAQKALE-IRGPYDIINLASIFGLNQALAKNCLTRNCRSVILHSKTRKSIHKGVVSITTLDELEPEESWKAG 261
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|909133550|gb|KNE59868.1| (hypothetical protein AMAG_05321 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 122.479 bits (306), Expect = 8.144e-29 Identity = 93/290 (32.07%), Postives = 143/290 (49.31%), Query Frame = 0
Query: 71 VEHVREATRRLGHLGYACVAFNETVVGRDGVR-----GLDRPASLKTRRPLWLAARGGLADKPEVRLRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARRLEW-----------LPAEVKWAGGSDGGGSEGKVGKEGEVAGEGEEEGEEEEGEEE 344
V+ R+ L LGY VA N+ V G+ + L P K L + ARG + +L RVTVV+ D + L A ++ DL+A PTS++ C+ + DIISLD+S R+ F S A RGI E+ Y+ ++N KR L+AN + ++ +GR ++ SSG A+ +T RGP DV+NL +LG+ ++ A +++ +C+ A HA+ RR + +PAE W G GG++ VG E E EE++ E+
Sbjct: 20 VDAARKTAADLVALGYHVVALNQVVQGKVPINLTNNIELVDPVEWKCDAQLVMTARGQ-GKQLIKQLSRVTVVLEDPSQISSLSTAATNLNQFDLLAVCPTSEKLWAACCQTVECDIISLDLSQRLPFHFKHSMVGEAVRRGIMIEIAYSAAF-KDNTAKR-NLIANATNLMRVCKGRNIILSSG--AKTVLET-RGPLDVVNLGCLLGMNQDDAKHAISTNCRAALIHAETRRKTFRAAVTFEPVGDVPAEASWTVGL--GGADDFVG------FGNESESEEDDAMED 295
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183375808|gb|ORY01412.1| (ribonuclease P protein subunit p30 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 119.398 bits (298), Expect = 6.199e-28 Identity = 81/248 (32.66%), Postives = 126/248 (50.81%), Query Frame = 0
Query: 57 FHDLCID----IPHHNTTVEHVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR 299
FHDL I + T ++ +R+ LGY VA N TVVG+ G ++ R + + G + R L R++VVV D + L V D+VA +PT+++ Q C +VDIISL++S R+ F L S A RGI FE+ Y+ I + R+ L++N ++ TRG+ ++ + S A+ A + LRGPYD++NL + GL + A LT +C+ H++ RR
Sbjct: 2 FHDLNISNDSKLKAGETQLDSLRKRLELCSELGYEVVALNNTVVGKIGQNNVN------PFRKMDIPDVSGKGFRKNFRVLSRLSVVVEDISQNYELNANNPVVSSYDIVAVQPTTEKLFQAACGTFEVDIISLELSTRLPFYLKHSTVGLAIERGIHFEISYSACIKDS--TARRHLISNAINLIRVTRGKNIIVT--SEAQRAME-LRGPYDIINLCSLFGLNQAAARDCLTINCRSVIYHSETRR 238
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1183498311|gb|ORZ21959.1| (RNase P subunit p30-domain-containing protein [Lobosporangium transversale]) HSP 1 Score: 118.627 bits (296), Expect = 1.550e-27 Identity = 75/228 (32.89%), Postives = 117/228 (51.32%), Query Frame = 0
Query: 75 REATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVRLR---RVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAVVLGLREEPALRSLTGSCQEARGHAQARR 299
R+ L HLGY VA+N V G+ G ++ L + P + L+ R+T+VV D + L ++ D++A +PT+++ Q C +VDIISLD+SAR+ F L S A RGI FE+ Y+ I + + R+ L++N ++ TRG+ ++ SS + RA LRGPYD++N +LGL + A L+ C+ HA+ RR
Sbjct: 26 RKRVELLNHLGYQAVAYNHEVTGKIGNNHINPITKL---------------NLPGINLKQYSRLTLVVDDVSQNYGLNTGNPTISSYDIIAVQPTNEKLFQAACGTFEVDIISLDMSARLPFYLKHSTVGLAIERGIYFELCYSAAIRDAS--ARRNLISNAQSLIRVTRGKNIILSS-QAMRAM--ELRGPYDIVNFGTLLGLNQATAKDCLSSHCRAVAMHAETRR 233
BLAST of EWM22442.1 vs. NCBI_GenBank
Match: gi|1198310993|gb|OUM67631.1| (hypothetical protein PIROE2DRAFT_4922 [Piromyces sp. E2]) HSP 1 Score: 118.627 bits (296), Expect = 1.867e-27 Identity = 71/255 (27.84%), Postives = 127/255 (49.80%), Query Frame = 0
Query: 73 HVREATRRLGHLGYACVAFNETVVGRDGVRGLDRPASLKTRRPLWLAARGGLADKPEVR-LRRVTVVVHDKGEAQFLCGAIRSVKWADLVAARPTSDQALQLLCEAGDVDIISLDISARMGFSLSTSQADAARARGIAFEVQYAGLISEENLVKRQQLMANTSGVLGATRGRGVVWSSGSSARAAWDTLRGPYDVMNLAV---VLGLREEPALRSLTGSCQEARGHAQARR-----------LEWLPAEVKWAGG 312
++++ L GY VAFN T+ G+ G P+ +K +++ R+T++++D + L ++ D++A +P +++ Q+ C DVDIISLD S+R+ F L + A RGI FE+ Y + + + R+ L++N + ++ TRG+ ++ S S A+ A + +RGPYD++NL V + GL + A LT +C++ H++ R+ L+ L E W G
Sbjct: 24 NLKKILNMLQKFGYEAVAFNNTISGKIPNNG---------SNPIQHFPIDTSDNKKDIKQYSRLTIIINDASQNYALNSNNETISAYDILAVQPQNEKIFQIACSVLDVDIISLDFSSRLPFYLKLPMVNLAIERGIHFEITYGASLRDNS--ARKYLISNAANLVRVTRGKNIIIS--SEAQKALE-IRGPYDIINLLVQSSIFGLNQALAKNCLTNNCRKVLLHSKTRKSIHKGVVSISTLDELEPEESWKAG 264 The following BLAST results are available for this feature:
BLAST of EWM22442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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