rna8195, rna8195 (mRNA) Nannochloropsis gaditana

Overview
Namerna8195
Unique Namerna8195
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1536
Alignment locationKK037248.1:62558..64455 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g8.3421.mrna
Orig protein idgnl|cribi|Naga_100011g8.3421
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:62558..64455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g8gene7938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8195rna8195-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22421.1cds8171Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8195 ID=rna8195|Name=rna8195|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp
TCCATTCAGCATTTCTGCATAAATCCCTTAGTACACCGGTACAGCTACGA
ATCGTCTCTCTATTCGCTCACATGTCATTCCTTTGTCAATATGAACCACA
GGCTTGAAGGAGGGTACGTCACCGTCTTCACTTGCACAGAGTACGGCACA
CAAATCCTCTCATTTTAGAATGCCGCCCCCGCATTCCTCTTTTCTCTCGC
CATTGCGTATGCTACTTCTATCCAATGCTTTGGAAATGCTGGCGGTAGCT
TTGGTGCTACCAGCCTACCCAGACCTGACGAAAGCCCTAGGTATTAGCCT
CCAGACGCGAGGCCTGATGGTATCGCTTTTCTCTCTCCTCCAATTCCTGT
CAAGTCCGATACTGGGTAGAGGAAGTGATGTTTTGGGCAGGAGTTTTATG
CTGCGCGTGTCTGCCGTGGCGTCCTTGTTTTGTTACGTGTGTATGTTGGT
GGCAAAAGATCAACGAACATTTATGCTCGGACGGGTCTTACCAGGCTTCT
TCAAATGCAGTATATCTGTCTCCCAGGCCTACATTTCGGACATTAGCAGC
CCCCAGGTTCGCGCCAAGAACATGGGCATGATGGGGAGTATGTTTGGCCT
TGCCTTCATCATCGGACCCGCAGTGGGCGGGTTTTTGATGTCCAAGGACC
CTTGGCTGACGGTATGGGTGGCCTTACTGGCGACGGCGGCGAACTTCATC
CTTCTGCTCTCCTTACCTGAACCCTCTACCCACTCGGCCCCTCCCAATCT
GAGAGGAGAAGGAAGCGAAAGGAAGGCAAACGTTCCCAATCCGAAAGAAG
AAGGAAGCGAAAGGAAGGCAAATGCCAATGGTACCACGGCTGTCAACGGC
AAGGGAAGTGTGGCAAGTAGGTCTAAAGATGGAGTGTGGGATTTGATCCG
ACACGGCCCTCAGGGAGGGCAGGTGGCCGTGTTGCTGGCGCGCAAGGTCT
TTGTCGCCATGTCCAGCGGTATATTTGAGACTAGCTTTGCCAACTACGCC
TCCAAGCATTTGGGCATGGACGGGCAGACGCTGGGACTATTGCTGAGTTT
TTTAGGTGTAGTCTCGGTCGTAAACAACGTATTCATCGTTCGGTGGCTGT
CGAACAGTTTCCAGGATCATCAGCTCATTTTCCCAGCTATCGTAGGCCAA
GCATTTTCCACATTTTGCTGGGGACATGTGTACAACCTTGCCAGTTTGCT
GCCTGTCTTAGCCAGCTTGACGATAACAGGATCCATCTTCCAGACCTTGC
TCTCCACCGAGCTTTCCACTGTCACGCCGCACGCTCTCGTGGGTACAGTA
TTGGGAATCTCTTATGCCATTGAGACGTTCGCGAAGATATTGACGCCATT
TCTGGGTGGTTACCTCCTTGAAAGACACGGTGGGCATGCCTTAGGCTTTG
TGTCAGCACTGTTTTTGCTGCCTGTTTGCGCACATGTAGCTTTTACAGAA
TTTTTTAAAGTCAGAAAGGTCGTCCAGGAGGACAAAAAGGAGAAATAAAA
GGTCGTAATGTGTACAAAATGAGAAGCTGCATTTCC
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protein sequence of rna8195

>rna8195-protein ID=rna8195-protein|Name=rna8195|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MQGLIEEVSAATADCPSSPAKEHFSDRGEDEVIHEETTASHPPSPDTAGS
ATDSLIRSLMEELSAAKEEIARLTKERAYFKRKAEWCTIEDQRILSPVIT
STDHWQERTWLLLHEPIRSALLDFEELVASPSFDPVQYPWKVTNFFYFFN
TAFAPYVRRHHQVEQKIYIPWVAGKTEIPDEVRGGYDGIEELIQEVEASE
AEYKSLERAIRKGKIPPASVETSVVRSDTSAPSTLGPLSQGHENIKAKNR
EKAPDEEGGPASAPASLPATSLASAPAPSPKNTPLSSRSLYDWRRRLIAR
LDRLSHHLIVHMDQEESFFPPAVLRYFSQHEEERILEQMSSASAAHLELP
MVLLAMDVWGSPETKAAFLKKLSRAARYTLNTYWLSSYKKSVARSLESLA
LQEPPPTVYLPHMSVNQLLVAAPVFLLCTIS
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mRNA from alignment at KK037248.1:62558..64455+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8195 ID=rna8195|Name=rna8195|organism=Nannochloropsis gaditana|type=mRNA|length=1898bp|location=Sequence derived from alignment at KK037248.1:62558..64455+ (Nannochloropsis gaditana)
GCATGTTCTCTTACAACGATAGAGAGAAGACAAAGAATGGGCAAATGTCA
GTTTAGATGGGTTTTCCATACTACCCTGTCGCGGGTCTGTGTACTGACAT
GGGTCCATCTCCCGGAGGGGCCCTCTATCACGTCGCAGGTAACACACGGC
TAATTTAAATTCTGGTGCGAGGGTTTGAACTGGTCATGCCGCCACTCATG
AAGACCTCGCCTTCATTCACCATTGCTTTGTAAAACAGAGGGATGCAAGG
CCTGATTGAAGAAGTCTCTGCGGCCACAGCCGattgtccttcctcccccg
cgaaGGAGCACTTCAGTGACCGTGGCGAGGACGAAGTGATCCATGAGGAG
ACGACAGCCTcgcatcccccctcccctgacACAGCGGGAAGCGCCACAGA
CTCGCTCATTCGAAGCTTGATGGAGGAACTGAGTGCTGCCAAGGAAGAAA
TTGCCCGTCTGACGAAAGAACGCGCCTATTTTAAGCGCAAAGCCGAATGG
TGTACCATCGAAGATCAACGCATTCTCTCGCCCGTCATCACGAGCACGGA
CCATTGGCAAGAAAGAACTTGGCTCTTGCTGCACGAGCCCATACGCAGCG
CTCTATTGGATTTCGAAGAACTAGTtgcgtcgccctccttcgatCCAGTG
CAGTACCCTTGGAAAGTGACCAATTTTTTCTACTTCTTCAACACGGCCTT
CGCTCCCTATGTCCGTCGGCACCATCAGGTGGAGCAAAAGATTTACATTC
CCTGGGTGGCCGGTAAAACGGAGATTCCGGACGAGGTCAGAGGAGGATAT
GATGGAATCGAAGAGTTGATAcaagaggtggaggccagCGAGGCCGAATA
CAAGTCCTTGGAGAGAGCGATCCGAAAGGGGAAAATCCCACCGGCGAGCG
TGGAGACAAGCGTGGTTCGGTCCGACACCTCGGCCCCGTCTACCTTGGGT
CCCTTGTCGCAGGGGCATGAGAATATAAAGGCGAAGAACAGGGAGAAGGC
tcctgacgaggagggcgggcctgcgtcggcccctgcctccctgcctgcca
cGTCCCTGGCAtccgctcctgctccatccCCCAAGAATACCCCGCTATCT
AGCAGGTCTCTCTACGACTGGCGCCGTCGCCTCATAGCACGCCTGGaccg
cctctcccaccatCTCATCGTCCACATGGACCAGGAGGaatccttctttc
cccccgccgtcctccgctACTTCTCCCaacacgaggaggagcggatCCTC
GAACAAATGTCCTCGGCCAGCGCCGCCCACTTGGAGCTCCCCATGGTGCT
ACTGGCCATGGACGTGTGGGGGTCTCcggagacgaaggcggcCTTCCTGA
AGAAGCTCTCACGGGCTGCCCGCTACACCCTCAACACGTACTGGCTTTCC
TCCTACAAGAAGAGCGTGGCCCGCTCCCTCGAGTCCCTGGCCCTGCAAGA
GCCCCCGCCCACGGTCTACCTGCCCCACATGTCTGTGAACCAGCTCCTGG
TCGCGGCCCCCGTCTTCTTGCTCTGCACGATCAGCTGACCCGGCCTGGGG
GCTGGGCGATGGCCTCGTCGGAAAGGGCCaaagggcgggcgtggggggta
TAGGCGGTGGAGCTTGCATGGGAGGTTTCATAGGGTGGGCGGTGTGTGTG
CAGAtggtggggcgggagggtgaAGAGTGTACATGCACGGGATATTCGTC
GCTAGAAGGGACATTGCTGAAAGGAAAGCGTACGCGTTTTAGATGCTTCG
GTTTTAAGGTTTTGACCGACGTCCCCCACTTTCATTGGCGCTTCCTCACG
CCTTCAAGATCACGCCTTCAAGATCCTCAAATGCTCTCGTACCCCGTCAG
CACCTGCCaatctccctctcctcctccccctcctcctcctccccctcc
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Coding sequence (CDS) from alignment at KK037248.1:62558..64455+

>rna8195 ID=rna8195|Name=rna8195|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037248.1:62558..64455+ (Nannochloropsis gaditana)
ATGCAAGGCCTGATTGAAGAAGTCTCTGCGGCCACAGCCGattgtccttc
ctcccccgcgaaGGAGCACTTCAGTGACCGTGGCGAGGACGAAGTGATCC
ATGAGGAGACGACAGCCTcgcatcccccctcccctgacACAGCGGGAAGC
GCCACAGACTCGCTCATTCGAAGCTTGATGGAGGAACTGAGTGCTGCCAA
GGAAGAAATTGCCCGTCTGACGAAAGAACGCGCCTATTTTAAGCGCAAAG
CCGAATGGTGTACCATCGAAGATCAACGCATTCTCTCGCCCGTCATCACG
AGCACGGACCATTGGCAAGAAAGAACTTGGCTCTTGCTGCACGAGCCCAT
ACGCAGCGCTCTATTGGATTTCGAAGAACTAGTtgcgtcgccctccttcg
atCCAGTGCAGTACCCTTGGAAAGTGACCAATTTTTTCTACTTCTTCAAC
ACGGCCTTCGCTCCCTATGTCCGTCGGCACCATCAGGTGGAGCAAAAGAT
TTACATTCCCTGGGTGGCCGGTAAAACGGAGATTCCGGACGAGGTCAGAG
GAGGATATGATGGAATCGAAGAGTTGATAcaagaggtggaggccagCGAG
GCCGAATACAAGTCCTTGGAGAGAGCGATCCGAAAGGGGAAAATCCCACC
GGCGAGCGTGGAGACAAGCGTGGTTCGGTCCGACACCTCGGCCCCGTCTA
CCTTGGGTCCCTTGTCGCAGGGGCATGAGAATATAAAGGCGAAGAACAGG
GAGAAGGCtcctgacgaggagggcgggcctgcgtcggcccctgcctccct
gcctgccacGTCCCTGGCAtccgctcctgctccatccCCCAAGAATACCC
CGCTATCTAGCAGGTCTCTCTACGACTGGCGCCGTCGCCTCATAGCACGC
CTGGaccgcctctcccaccatCTCATCGTCCACATGGACCAGGAGGaatc
cttctttccccccgccgtcctccgctACTTCTCCCaacacgaggaggagc
ggatCCTCGAACAAATGTCCTCGGCCAGCGCCGCCCACTTGGAGCTCCCC
ATGGTGCTACTGGCCATGGACGTGTGGGGGTCTCcggagacgaaggcggc
CTTCCTGAAGAAGCTCTCACGGGCTGCCCGCTACACCCTCAACACGTACT
GGCTTTCCTCCTACAAGAAGAGCGTGGCCCGCTCCCTCGAGTCCCTGGCC
CTGCAAGAGCCCCCGCCCACGGTCTACCTGCCCCACATGTCTGTGAACCA
GCTCCTGGTCGCGGCCCCCGTCTTCTTGCTCTGCACGATCAGCTGA
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Synonyms
Publications