rna8194, rna8194 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8194
Unique Name	rna8194
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1938
Alignment location	KK037248.1:60424..62037 +

Link to JBrowse

Properties


Property Name	Value
Product	major facilitator superfamily mfs_1
Orig transcript id	gnl\|cribi\|Naga_100011g7.3466.mrna
Orig protein id	gnl\|cribi\|Naga_100011g7.3466
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:60424..62037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g7	gene7937	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8194	rna8194-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22466.1	cds8170	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:60424..62037+
coding sequence from alignment at KK037248.1:60424..62037+

mRNA sequence

>rna8194 ID=rna8194|Name=rna8194|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp
AGGTCCTCGAGTTCGACCCCTAACACAAGTGAACATCGTTTCAAAATGTA
CCGATGTGTAAAAGGCGCTTTTACAGAATGGAAATAGAAGTCTACGATTT
CACACTGCGGTTCATACGGCCCGCTCTCGAATCAACTTCGTCATATCTAC
CTCCTCCTCTTTTGCTTATCCGTACCACCAGTAGGAAGATGCCACCACGA
ACACGGTCACAAATTGCGGGAAATGCCGGTTCTAGAACAGGAAAGGGCAA
TAGCCTGAGTGGGGAGGAGGAAGGCGTGTCCGAGGAGGGTATGGGCTATT
TGCCCTTCATAACACCGTTTTATGTCCTCATGGCCGTGGTTGTGGTGATT
GGATCATTTTTGGCCTTCAAAATCTTACACGGGCCTTTCAAGCCCGTGCT
TTGGAAGGAACCTCCCGAGCTTGTCTCGTTATTGGTGAATCACGACCTGG
CAGGGGCGGAGCACCTATTTTTAAACCGAGTGGTAGGGCCTGAATCGATC
GCGGTGGGCAGCGAGAAGGAAATGTACTTCAGCCTGAATGACGGCCGGAT
CGTACGTACTGACAGCAAGTACGGAAACATGACCACCGTGTTTTTCACGG
GCGGGGTGGTCAAGGCTGAAAAAGCAGGTCAAAAGGACGGGAACGCTCGA
GAAAGGAGGCTTCCAAATGGCGGGCAGGAACGGAGTCTCATGGCGTGGTG
CAGTGCCGAGATGGACGCGATGCGCTTCTCCACGTCCACCGAGAGCCTTT
GCGGGAGGCCGCTGGGCCTTCGCTTTGTTCGAGAACTCAACCAGTTGTAC
ATCGCGGACGCCTACCACGGCATCTTCACACTCGACCCCGTCACCCTCCA
CGTGCGCCATCTGGTAGCGCCCTCCGCCTCGACCCCCCCTCCCTCCTCTT
CCTCCTCGCCCGCCCTGCACCCGGGCGTCCGCGCCCCTCTCGGTTTCACC
AACGACCTGTCCGTGGTCGCCTCCACGGGCGACATTTTCTTCTCCGACTC
GACGTGGGCCTGGTCCCGCGCCCTGCACGCGGTCGAGGTCTTGGACGGAG
GCCCTCGGGGCCGACTTTTTCGATATGTGGGGGCCACGGGGGCGGTGGAG
CCCGTCCTCTGCGGCTTGCATTTCGCCAACGGCGTGCAGGTCCTGGGGGA
GGAGGAAGAGACGCGAGCGGGGAGACTGCCGGCGTCGGTGCTGGTGGTGG
AGAGTACGCGCTTCCGCATTTTGAAAGTGGATTTGGGGGCTTGGGCGAGG
GCGGAGGAGGACGTCAAGGCTCGAGCCTTGCAGGCCTGCGAGGAGGAGAG
CGCGCTCCCGCCTTTCGCGAGCGTCTTGGTGGAGGGCCTGCCTGGACTGC
CGGACAACTTGCGTCTGTTGCGACGTGAGGAAGCGGGGGCGTGCAGCAAG
GAGGGATGGCTGGGGGGGGAGGGAGAAGAGGCGGTGCTCATGCTGGGTAT
GGGGGTGAAAAACGCCAAGCCCTTCTCCCTCCTCCACTTTCTGTACCAGC
ACTTGGCCCTCCGCTTGCTCCTGGGGGCTTTGATCCCCCTGCCGTACTTC
CATTACTTCATGCCCAAATACGGGGTGGCCGGCGTGCTCTCTCTCGAGGG
GCGGTTGCTGCGGGTGCTGCAGGATCCCACCGGGCGCACGCCTTTCCTGA
GCGAGGTACACGTCCACCCGGAGACGGGGGACCTGCTGTTAGGCTCGTTT
AGGAACAAGTTCGTCGGGAGGGTGACGGTGTCGGCGCTAGGCTAGGAGGG
ATGGAAGAGAGATGGAGAGCCTCAGCCATTCATGGGTATGTAAAGCGGTA
GATTCAGAATCAAAACAAATTACTTGGTGCAACGTTCACAGATTTTTATT
CTTTTGCGATTTGCGTCGGCGTCCGGCATGTGGCTATCCACTGCTCGGGC
CTTTACCTCCTCTTGCTCCCGATACATCTGCCTCCTCC

protein sequence of rna8194

>rna8194-protein ID=rna8194-protein|Name=rna8194|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MPPPHSSFLSPLRMLLLSNALEMLAVALVLPAYPDLTKALGISLQTRGLM
VSLFSLLQFLSSPILGRGSDVLGRSFMLRVSAVASLFCYVCMLVAKDQRT
FMLGRVLPGFFKCSISVSQAYISDISSPQVRAKNMGMMGSMFGLAFIIGP
AVGGFLMSKDPWLTVWVALLATAANFILLLSLPEPSTHSAPPNLRGEGSE
RKANVPNPKEEGSERKANANGTTAVNGKGSVASRSKDGVWDLIRHGPQGG
QVAVLLARKVFVAMSSGIFETSFANYASKHLGMDGQTLGLLLSFLGVVSV
VNNVFIVRWLSNSFQDHQLIFPAIVGQAFSTFCWGHVYNLASLLPVLASL
TITGSIFQTLLSTELSTVTPHALVGTVLGISYAIETFAKILTPFLGGYLL
ERHGGHALGFVSALFLLPVCAHVAFTEFFKVRKVVQEDKKEK

mRNA from alignment at KK037248.1:60424..62037+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8194 ID=rna8194|Name=rna8194|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp|location=Sequence derived from alignment at KK037248.1:60424..62037+ (Nannochloropsis gaditana)
TCCATTCAGCATTTCTGCATAAATCCCTTAGTACACCGGTACAGCTACGA
ATCGTCTCTCTATTCGCTCACATGTCATTCCTTTGTCAATATGAACCACA
GGCTTGAAGGAGGGTACGTCACCGTCTTCACTTGCACAGAGTACGGCACA
CAAATCCTCTCATTTTAGAATGCCGCCCCCgcattcctcttttctctcgc
CATTGCGTATGCTACTTCTATCCAATGCTTTGGAAATGCTGGCGGTAGCT
TTGGTGCTACCAGCCTACCCAGACCTGACGAAAGCCCTAGGTATTAGCCT
CCAGACGCGAGGCCTGATGGTAtcgcttttctctctcctccaattcCTGT
CAAGTCCGATACTGGGTAGAGGAAGTGATGTTTTGGGCAGGAGTTTTATG
CTGCGCGTGTCTGCCGTGGCGTCCTTGTTTTGTTACGTGTGTATGTTGGT
GGCAAAAGATCAACGAACATTTATGCTCGGACGGGTCTTACCAGGCTTCT
TCAAATGCAGTATATCTGTCTCCCAGGCCTACATTTCGGTAAGCGCCCCT
ATCTTCACCCCATGCCAATTATTTCCTCAATATGTACTCCATCcatccct
gcttcccttcctgcagGACATTAGCAGCCCCCAGGTTCGCGCCAAGAACA
TGGGCATGATGGGGAGTATGTTTGGCCTTGCCTTCATCATCGGACCCGCA
GTGGGCGGGTTTTTGATGTCCAAGGACCCTTGGCTGACGGTATGGGTGGC
CTTACtggcgacggcggcgaaCTTCATCCTTCTGCTCTCCTTACCTGAAC
CCTCTACCCACTCGGCCCCTCCCAATctgagaggagaaggaagcgaaagg
aaggcaaaCGTTCCCAATccgaaagaagaaggaagcgaaaggaaggcaaa
TGCCAATGGTACCACGGCTGTCAACGGCAAGGGAAGTGTGGCAAGTAGGT
CTAAAGATGGAGTGTGGGATTTGATCCGACACGGCCctcagggagggcag
gtggcCGTGTTGCTGGCGCGCAAGGTCTTTGTCGCCATGTCCAGCGGTAT
ATTTGAGACTAGCTTTGCCAACTACGCCTCCAAGCATTTGGGCATGGACG
GGCAGACGCTGGGACTATTGCTGAGTTTTTTAGGTGTAGTCTCGGTCGTA
AACAACGTATTCATCGTTCGGTGGCTGTCGAACAGTTTCCAGGATCATCA
GCTCATTTTCCCAGCTATCGTAGGCCAAGCATTTTCCACATTTTGCTGGG
GACATGTGTACAACCTTGCCAGTTTGCTGCCTGTCTTAGCCAGCTTGACG
ATAACAGGATCCATCTTCCAGACCTTGCTCTCCACCGAGCTTTCCACTGT
CACGCCGCACGCTCTCGTGGGTACAGTATTGGGAATCTCTTATGCCATTG
AGACGTTCGCGAAGATATTGACGCCATTTCTGGGTGGTTACCTCCTTGAA
AGACACGGTGGGCATGCCTTAGGCTTTGTGTCAGCACTGTTTTTGCTGCC
TGTTTGCGCACATGTAGCTTTTACAGAATTTTTTAAAGTCAGAAAGGTCG
TCCAGGAGGACAAAAAGGAGAAATAAAAGGTCGTAATGTGTACAAAATGA
GAAGCTGCATTTCC

Coding sequence (CDS) from alignment at KK037248.1:60424..62037+

>rna8194 ID=rna8194|Name=rna8194|organism=Nannochloropsis gaditana|type=CDS|length=2658bp|location=Sequence derived from alignment at KK037248.1:60424..62037+ (Nannochloropsis gaditana)
ATGCCGCCCCCgcattcctcttttctctcgcCATTGCGTATGCTACTTCT
ATCCAATGCTTTGGAAATGCTGGCGGTAGCTTTGGTGCTACCAGCCTACC
CAGACCTGACGAAAGCCCTAGGTATTAGCCTCCAGACGCGAGGCCTGATG
GTAtcgcttttctctctcctccaattcCTGTCAAGTCCGATACTGGGTAG
AGGAAGTGATGTTTTGGGCAGGAGTTTTATGCTGCGCGTGTCTGCCGTGG
CGTCCTTGTTTTGTTACGTGTGTATGTTGGTGGCAAAAGATCAACGAACA
TTTATGCTCGGACGGGTCTTACCAGGCTTCTTCAAATGCAGTATATCTGT
CTCCCAGGCCTACATTTCGGACATTAGCAGCCCCCAGGTTCGCGCCAAGA
ACATGGGCATGATGGGGAGTATGTTTGGCCTTGCCTTCATCATCGGACCC
GCAGTGGGCGGGTTTTTGATGTCCAAGGACCCTTGGCTGACGGTATGGGT
GGCCTTACtggcgacggcggcgaaCTTCATCCTTCTGCTCTCCTTACCTG
AACCCTCTACCCACTCGGCCCCTCCCAATctgagaggagaaggaagcgaa
aggaaggcaaaCGTTCCCAATccgaaagaagaaggaagcgaaaggaaggc
aaaTGCCAATGGTACCACGGCTGTCAACGGCAAGGGAAGTGTGGCAAGTA
GGTCTAAAGATGGAGTGTGGGATTTGATCCGACACGGCCctcagggaggg
caggtggcCGTGTTGCTGGCGCGCAAGGTCTTTGTCGCCATGTCCAGCGG
TATATTTGAGACTAGCTTTGCCAACTACGCCTCCAAGCATTTGGGCATGG
ACGGGCAGACGCTGGGACTATTGCTGAGTTTTTTAGGTGTAGTCTCGGTC
GTAAACAACGTATTCATCGTTCGGTGGCTGTCGAACAGTTTCCAGGATCA
TCAGCTCATTTTCCCAGCTATCGTAGGCCAAGCATTTTCCACATTTTGCT
GGGGACATGTGTACAACCTTGCCAGTTTGCTGCCTGTCTTAGCCAGCTTG
ACGATAACAGGATCCATCTTCCAGACCTTGCTCTCCACCGAGCTTTCCAC
TGTCACGCCGCACGCTCTCGTGGGTACAGTATTGGGAATCTCTTATGCCA
TTGAGACGTTCGCGAAGATATTGACGCCATTTCTGGGTGGTTACCTCCTT
GAAAGACACGGTGGGCATGCCTTAGGCTTTGTGTCAGCACTGTTTTTGCT
GCCTGTTTGCGCACATGTAGCTTTTACAGAATTTTTTAAAGTCAGAAAGG
TCGTCCAGGAGGACAAAAAGGAGAAATAAATGCCGCCCCCgcattcctct
tttctctcgcCATTGCGTATGCTACTTCTATCCAATGCTTTGGAAATGCT
GGCGGTAGCTTTGGTGCTACCAGCCTACCCAGACCTGACGAAAGCCCTAG
GTATTAGCCTCCAGACGCGAGGCCTGATGGTAtcgcttttctctctcctc
caattcCTGTCAAGTCCGATACTGGGTAGAGGAAGTGATGTTTTGGGCAG
GAGTTTTATGCTGCGCGTGTCTGCCGTGGCGTCCTTGTTTTGTTACGTGT
GTATGTTGGTGGCAAAAGATCAACGAACATTTATGCTCGGACGGGTCTTA
CCAGGCTTCTTCAAATGCAGTATATCTGTCTCCCAGGCCTACATTTCGGA
CATTAGCAGCCCCCAGGTTCGCGCCAAGAACATGGGCATGATGGGGAGTA
TGTTTGGCCTTGCCTTCATCATCGGACCCGCAGTGGGCGGGTTTTTGATG
TCCAAGGACCCTTGGCTGACGGTATGGGTGGCCTTACtggcgacggcggc
gaaCTTCATCCTTCTGCTCTCCTTACCTGAACCCTCTACCCACTCGGCCC
CTCCCAATctgagaggagaaggaagcgaaaggaaggcaaaCGTTCCCAAT
ccgaaagaagaaggaagcgaaaggaaggcaaaTGCCAATGGTACCACGGC
TGTCAACGGCAAGGGAAGTGTGGCAAGTAGGTCTAAAGATGGAGTGTGGG
ATTTGATCCGACACGGCCctcagggagggcaggtggcCGTGTTGCTGGCG
CGCAAGGTCTTTGTCGCCATGTCCAGCGGTATATTTGAGACTAGCTTTGC
CAACTACGCCTCCAAGCATTTGGGCATGGACGGGCAGACGCTGGGACTAT
TGCTGAGTTTTTTAGGTGTAGTCTCGGTCGTAAACAACGTATTCATCGTT
CGGTGGCTGTCGAACAGTTTCCAGGATCATCAGCTCATTTTCCCAGCTAT
CGTAGGCCAAGCATTTTCCACATTTTGCTGGGGACATGTGTACAACCTTG
CCAGTTTGCTGCCTGTCTTAGCCAGCTTGACGATAACAGGATCCATCTTC
CAGACCTTGCTCTCCACCGAGCTTTCCACTGTCACGCCGCACGCTCTCGT
GGGTACAGTATTGGGAATCTCTTATGCCATTGAGACGTTCGCGAAGATAT
TGACGCCATTTCTGGGTGGTTACCTCCTTGAAAGACACGGTGGGCATGCC
TTAGGCTTTGTGTCAGCACTGTTTTTGCTGCCTGTTTGCGCACATGTAGC
TTTTACAGAATTTTTTAAAGTCAGAAAGGTCGTCCAGGAGGACAAAAAGG
AGAAATAA

Synonyms

Publications