rna8190, rna8190 (mRNA) Nannochloropsis gaditana

Overview
Namerna8190
Unique Namerna8190
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1557
Alignment locationKK037248.1:52023..53646 -

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Properties
Property NameValue
Productbestrophin-like protein
Orig transcript idgnl|cribi|Naga_100011g3.3501.mrna
Orig protein idgnl|cribi|Naga_100011g3.3501
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:52023..53646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g3gene7933Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22501.1cds8166Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8190rna8190-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8190 ID=rna8190|Name=rna8190|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp
ATTTACAGTCTAAGAAAAAGAGGAGGTACTCCATTCGAAGCCGGAGACAA
TGCCCTCATCATCTCCCGCTCGGAGAGCGGGAAGTGGTCGCAATGGAAGT
GGCAATAGTCCCAGTGGCGCAAAGGCAGGTCTGGGGGGAGGCGAGTGGGA
TTTCGCCGTCCGCCCTGGGAAGTACACAGAGCTCACAGGGACAGGCCGCC
TGGGTGGGAGTAGTGGTGGGGCCTATGGCTTGGAACGCAGCGACGTAAAT
GCCGGATCACCGCTCCGAACGAACGTTGGGAGTCGGGGCTTAAGTATCAA
TTTGTTCGCGTCGAACGCCTCATCGGCCCTCGGTGAGGAGGATAGCAGTG
TCGACATCCCCTCTTCCTACATGGGAGATGACTCAACCGTCTCCTCCTGG
CCCACCTCGCCACGGAATAGCCTGGATCAACGGACCTGCTGCAACCTCAT
CTCGTACCGGTATTACTTCATCACCACCCTGCTCGTGGCGTCGGTCCTGT
TCGTCTGGGCCTCTGTCCTGGGCTTTGTCTGGGGCGTCTTGCTATCGCTC
GGGGCCATCATCGCCCACCTTGCCTACTTCCGTCTCCTCCTCCGCGGCGT
CCAACCGCCTGTAGGGGTGGCGAACACCAGAAAACAGCGATGTTTGCATT
ACACCGTGCTGCTATTGTCCTATGTGATAATGATCTACATGCTCATTCGC
CTGGCGACGGCTAGAAATACCTACATTCGAGACCACGTATTTCCCTCAAA
TTGCTACCCAAATGCGCTGGGCACTGTGCCTCATGCGTGTGTTCGTGTGA
CGGAGCGTCCAATGGAAGGAGAAGACTGGTCTCACGGCCTGAGCGCTCCG
ACCATTTTCACGCCGGAGGTCGACAGCGTCGTGCGCCTTGTCGACGCCTG
GACAAGGAAGCAATTCCAGACAAAGGTGGTGGGAAGGAGGAGGGAGGCAG
GGAAGGAGAGCGTGCACCTGGTGGCAGTGACAGGCTTCTGGGGCTTTGTG
GACGACGTGGCCGTGGAGGTGGCCTGCGTCGGAAGGGGCGGGGCCGGGGA
GGGAGGGAATGGAACGGTCGTCGTGCGTGTGCAAAGCGAGCAGCGGTTCG
GGACCCTTGACGGGGGAAAGAACAAGGATCGGGTCAAGTCTCTGCTAAGC
TTCTTGGAGAGGCAGGCTGGAGGCCTGCCCGTGGGGGCGTGCTCCCCCAC
GCCTCCCCGGTAGGAGCATGCCGCACTACCGCGATGTATACTAGGTAAAG
TAGAAAGTCGGCCTACCAGAAAACACTTATCGCCAAGGATGTAATAGGTT
TATGCTCAAAGCAATGTGGCCGCAAAAAGGGCTTTGTAAAGTATCCGTAA
ACAAGTGGAGGGCGACTTTGGAATGAGAAGGGGTGCTAGGAAAGAAAAGA
ATGCGACGGAGCTGCCTTGCAGGATGAGACACCGCATTTGGAGCTGAGAC
GAGTGTCTCGAAGTAATTTTGTGTGTATGATATGTAAGATGATATGACTG
GTACCCGAAGCATTGATGTATGGGTTCAGAAAAAGTAAATCAATGACGCA
TTTAGGA
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protein sequence of rna8190

>rna8190-protein ID=rna8190-protein|Name=rna8190|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MQTTAMVSFLLFSISGQPRCSALLHVRLPLRPLPALDRVRPFYHHVHTFL
RPFPRMPKGMSCLYSTSSASLQAPTLNSDKSSEEAPLPAPPKRKESAEHF
AYWFTTYAFLMPEIRPVTFLSMVFSAVVALAYKHGVIGALDLQPHSLLAG
PLGFLLTFRAQQGFDRCQGARRTWDTVLDTSRDMARCVGGADILLSDDKY
SFPAGRLIALIQAYGILLEEFVTRIPREDELKELLSEQDLLVLEARRTHR
PVALIEIMAQEVARIARAQTTFRESPYFSRLLNCIDQLGHHTTLIHSLTK
TPVPPIFYTHALRFLTLYVFTLPLALVDKIPGGALVPVIGLMTWILFGLR
ELGIKAQYPFSTGLVNVKTVWEEVVFNTPDLLKDAVQKVKKQM
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mRNA from alignment at KK037248.1:52023..53646-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8190 ID=rna8190|Name=rna8190|organism=Nannochloropsis gaditana|type=mRNA|length=1624bp|location=Sequence derived from alignment at KK037248.1:52023..53646- (Nannochloropsis gaditana)
CGTATGTGGCTCGTTTTGTCGCTTTTTTGTTCCGGTGAAGACGGAGGACA
GCGGGCGTGCACATTCAACATGGGGGATGGCGCGAAGACGAGGAAAGGAA
CGTCCGAATGTGTTTTGAACATAACTTGGACTCATTCATATAATCTAGCA
GAGTGCCTGCCACCCTTGCATCATGCAGACTACCGCCATGGTGAGCTTTC
TCCTTTTTTCTATTAGTGGACAACCCCGGTGCAGTGCCTTACTGCACGTC
CGATTGCCACTGCGTCCGCTACCTGCGCTTGATCGCGTCCGGCCATTTTA
CCACCATGTGCACACTTTTCTTCGTCCTTTTCCAAGAATGCCAAAGGGGA
TGTCCTGCCTCTACTCCACATCTAGCGCGAGCCTTCAAGCGCCAACTCTG
AACTCAGACAAATCATCAGAGGAGGCGCCCTTACCCGCTCCTCCCAAACG
GAAGGAAAGTGCCGAGCATTTTGCGTACTGGTTTACTACTTATGCATTTT
TGATGCCCGAAATTCGACCTGTTACATTTTTAAGCATGGTGTTTTCCGCT
GTAGTAGCCCTGGCATACAAACACGGCGTTATAGGCGCGCTCGACCTTCA
GCCACATTCCTTACTCGCTGGGCCTCTGGGGTTTTTGTTGACGTTTCGGG
CGCAGCAAGGCTTCGATCGATGCCAGGGAGCGCGTAGGACGTGGGATACC
GTCCTCGACACCTCCCGTGACATGGCTCGATGCGTGGGGGGGGCCGATAT
TTTGCTTTCGGACGATAAGTACTCCTTCCCCGCCGGGCGCCTGATAGCCT
TGATCCAAGCCTACGGCATCCTTCTCGAGGAGTTCGTGACGCGCATCCCC
CGGGAGGATGAGTTGAAGGAGCTTCTGAGCGAGCAGGACTTGCTCGTCCT
AGAGGCACGCCGGACCCACAGGCCGGTGGCATTGATCGAAATAATGGCCC
AAGAGGTGGCTCGCATTGCCCGGGCGCAAACGACGTTTCGAGAGAGTCCC
TATTTCAGTCGGCTGCTGAACTGCATCGATCAACTCGGACACCACACCAC
GCTGATTCACAGCCTGACCAAGACGCCGGTGCCCCCGATCTTCTACACGC
ACGCCCTCCGATTCCTCACCCTCTACGTCTTCACCCTTCCCCTAGCTCTC
GTCGACAAAATACCTGGAGGCGCGCTGGTACCAGTGATAGGGCTCATGAC
CTGGATCCTCTTTGGACTGAGAGAGTTGGGAATCAAAGCCCAATACCCTT
TCTCGACAGGATTGGTGAACGTGAAGACCGTGTGGGAAGAGGTAGTCTTC
AACACGCCGGATTTGTTGAAAGATGCCGTCCAGAAGGTGAAAAAGCAAAT
GTAATCGACGGAGGGAACGCAGCACTGGCGGGTTAATAGGTCGTATAGCT
GGCGCTTGTCGCGTGCTATAGTGCAGGACACGAGTGGCCTCCACTCGACC
GTGACGATATTTGAATTTGAAATTTGTCGTGGGACATTGTATATTCGCAG
TGAGAAAGATCAATGGGAAATTGGCATTGATTTTCGTATGTCTAAGACTA
TACCATAAAGTACTATAAAACTTACTCAACTTGATTCTACAAGGCGATAT
CGAAGAAAAGCTGCTCGCTGTTCT
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Coding sequence (CDS) from alignment at KK037248.1:52023..53646-

>rna8190 ID=rna8190|Name=rna8190|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at KK037248.1:52023..53646- (Nannochloropsis gaditana)
ATGCAGACTACCGCCATGGTGAGCTTTCTCCTTTTTTCTATTAGTGGACA
ACCCCGGTGCAGTGCCTTACTGCACGTCCGATTGCCACTGCGTCCGCTAC
CTGCGCTTGATCGCGTCCGGCCATTTTACCACCATGTGCACACTTTTCTT
CGTCCTTTTCCAAGAATGCCAAAGGGGATGTCCTGCCTCTACTCCACATC
TAGCGCGAGCCTTCAAGCGCCAACTCTGAACTCAGACAAATCATCAGAGG
AGGCGCCCTTACCCGCTCCTCCCAAACGGAAGGAAAGTGCCGAGCATTTT
GCGTACTGGTTTACTACTTATGCATTTTTGATGCCCGAAATTCGACCTGT
TACATTTTTAAGCATGGTGTTTTCCGCTGTAGTAGCCCTGGCATACAAAC
ACGGCGTTATAGGCGCGCTCGACCTTCAGCCACATTCCTTACTCGCTGGG
CCTCTGGGGTTTTTGTTGACGTTTCGGGCGCAGCAAGGCTTCGATCGATG
CCAGGGAGCGCGTAGGACGTGGGATACCGTCCTCGACACCTCCCGTGACA
TGGCTCGATGCGTGGGGGGGGCCGATATTTTGCTTTCGGACGATAAGTAC
TCCTTCCCCGCCGGGCGCCTGATAGCCTTGATCCAAGCCTACGGCATCCT
TCTCGAGGAGTTCGTGACGCGCATCCCCCGGGAGGATGAGTTGAAGGAGC
TTCTGAGCGAGCAGGACTTGCTCGTCCTAGAGGCACGCCGGACCCACAGG
CCGGTGGCATTGATCGAAATAATGGCCCAAGAGGTGGCTCGCATTGCCCG
GGCGCAAACGACGTTTCGAGAGAGTCCCTATTTCAGTCGGCTGCTGAACT
GCATCGATCAACTCGGACACCACACCACGCTGATTCACAGCCTGACCAAG
ACGCCGGTGCCCCCGATCTTCTACACGCACGCCCTCCGATTCCTCACCCT
CTACGTCTTCACCCTTCCCCTAGCTCTCGTCGACAAAATACCTGGAGGCG
CGCTGGTACCAGTGATAGGGCTCATGACCTGGATCCTCTTTGGACTGAGA
GAGTTGGGAATCAAAGCCCAATACCCTTTCTCGACAGGATTGGTGAACGT
GAAGACCGTGTGGGAAGAGGTAGTCTTCAACACGCCGGATTTGTTGAAAG
ATGCCGTCCAGAAGGTGAAAAAGCAAATGTAA
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Synonyms
Publications