rna8188, rna8188 (mRNA) Nannochloropsis gaditana

Overview
Namerna8188
Unique Namerna8188
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length403
Alignment locationKK037248.1:47904..48598 -

Link to JBrowse

Properties
Property NameValue
Producttriosephosphate isomerase
Orig transcript idgnl|cribi|Naga_100011g1.3490.mrna
Orig protein idgnl|cribi|Naga_100011g1.3490
GeneTPI
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:47904..48598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TPIgene7931Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8188rna8188-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22490.1cds8164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8188 ID=rna8188|Name=rna8188|organism=Nannochloropsis gaditana|type=mRNA|length=403bp
GTCCCAGGCCATCCTGTGCATCGGGGAGACCAGGGAGGAGTATGAGCTCG
GTGTGAACAAGCTCATCTGCGGGCTGCAGCTGGCGAAGGGCCTGAAGGGG
GTTACCAAGGAGCAAATGGAGAACGTGGCCATCGCCTACGAGCCCGTGTG
GGCGATCGGCACGGGCCTGACGGCCACCCCTGAGATCGCGCAAGACGTGC
ACTCGAACATTCGCGCCATTCTGGGGGAGGCTTACGGGCAGGCGGTGGCC
GACAAGGTGGTGATCCAGTATGGGGGCTCTGTCACGCCCGATACCGTGGA
TGAGCTCATGGCCATGCCAGACATCGACGGGGTCCCTGGTGGGGGGGGCA
TCGCTGGTCGGGGAGAAGTTTGCGCGGATTATTAACTTCAAATAGAAAGG
GGG
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protein sequence of rna8188

>rna8188-protein ID=rna8188-protein|Name=rna8188|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMM
SGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLV
PVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRC
WLRA
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mRNA from alignment at KK037248.1:47904..48598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8188 ID=rna8188|Name=rna8188|organism=Nannochloropsis gaditana|type=mRNA|length=695bp|location=Sequence derived from alignment at KK037248.1:47904..48598- (Nannochloropsis gaditana)
ATGATGCGACCTCTCTGCCTCTGGACGGTTGCCATGTTGGCTGCGTCTGC
TACGGCGTTTATCCCGCACACTGCCTTTCGTCCCAGTAGCCCTGTGGCGA
CAAGGAGGTGTAGCAGGGCTGTAAGCCGTGGCACGGGAGTGAGCATGATG
TCTGGACGCCGGCCTTTCATCGCGGGTAACTGGAAAGAGAACCCTGATAC
TTTGGAAGCCGCGATTGACCTGGCCAAAGCGGTACGTGAACGGGATGACA
CACTCCTACTGTAAAAACACTTTGGATTATCGCAGATCACCCTTTTGTTT
GCTTTTGTTTGTTTTGCTGGAGCTTTCACGTGTGGGCTTTGCCGATTCTC
CTGGCCTCAAATGCTCCCTTATTCCTCCTTTACCTCACGTCCTTCCTCCC
TCTCAGGTATCCACCGCCTCCTCCTCCGCCAGCAATGTAGACGTGGCGGT
CGTGGTGCCCTTCCCCTTCCTGGTGCCGGTCAAGGAGACCCTCAAAGGCA
GCAACGTGTTGATCGGCGCGCAAGACCTGTACACCGAGGACAAGGGGGCC
TACACGGGCGCCACTTCCCTGCCCATGATCAAGTCCGTGGGGGCCCAGTG
GGTCCTTTGCGGGCACTCGGAGCGCCGGGCACTCTTCGGCGACACGGACG
AAACCGTCAATGCCAAGCTCAAGAAGGTGCTGGCTGCGGGCTTGA
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Coding sequence (CDS) from alignment at KK037248.1:47904..48598-

>rna8188 ID=rna8188|Name=rna8188|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at KK037248.1:47904..48598- (Nannochloropsis gaditana)
TCCGTGGGGGCCCAGTGGGTCCTTTGCGGGCACTCGGAGCGCCGGGCACT
CTTCGGCGACACGGACGAAACCGTCAATGCCAAGCTCAAGAAGGTGCTGG
CTGCGGGCTTGAGTATCCACCGCCTCCTCCTCCGCCAGCAATGTAGACGT
GGCGGTCGTGGTGCCCTTCCCCTTCCTGGTGCCGGTCAAGGAGACCCTCA
AAGGCAGCAACGTGTTGATCGGCGCGCAAGACCTATGATGCGACCTCTCT
GCCTCTGGACGGTTGCCATGTTGGCTGCGTCTGCTACGGCGTTTATCCCG
CACACTGCCTTTCGTCCCAGTAGCCCTGTGGCGACAAGGAGGTGTAGCAG
GGCTGTAAGCCGTGGCACGGGAGTGAGCATGATGTCTGGACGCCGGCCTT
TCATCGCGGGTAACTGGAAAGAGAACCCTGATACTTTGGAAGCCGCGATT
GACCTGGCCAAAGCGTCCGTGGGGGCCCAGTGGGTCCTTTGCGGGCACTC
GGAGCGCCGGGCACTCTTCGGCGACACGGACGAAACCGTCAATGCCAAGC
TCAAGAAGGTGCTGGCTGCGGGCTTGAGTATCCACCGCCTCCTCCTCCGC
CAGCAATGTAGACGTGGCGGTCGTGGTGCCCTTCCCCTTCCTGGTGCCGG
TCAAGGAGACCCTCAAAGGCAGCAACGTGTTGATCGGCGCGCAAGACCTA
TGATGCGACCTCTCTGCCTCTGGACGGTTGCCATGTTGGCTGCGTCTGCT
ACGGCGTTTATCCCGCACACTGCCTTTCGTCCCAGTAGCCCTGTGGCGAC
AAGGAGGTGTAGCAGGGCTGTAAGCCGTGGCACGGGAGTGAGCATGATGT
CTGGACGCCGGCCTTTCATCGCGGGTAACTGGAAAGAGAACCCTGATACT
TTGGAAGCCGCGATTGACCTGGCCAAAGCGTCCGTGGGGGCCCAGTGGGT
CCTTTGCGGGCACTCGGAGCGCCGGGCACTCTTCGGCGACACGGACGAAA
CCGTCAATGCCAAGCTCAAGAAGGTGCTGGCTGCGGGCTTGAGTATCCAC
CGCCTCCTCCTCCGCCAGCAATGTAGACGTGGCGGTCGTGGTGCCCTTCC
CCTTCCTGGTGCCGGTCAAGGAGACCCTCAAAGGCAGCAACGTGTTGATC
GGCGCGCAAGACCTATGATGCGACCTCTCTGCCTCTGGACGGTTGCCATG
TTGGCTGCGTCTGCTACGGCGTTTATCCCGCACACTGCCTTTCGTCCCAG
TAGCCCTGTGGCGACAAGGAGGTGTAGCAGGGCTGTAAGCCGTGGCACGG
GAGTGAGCATGATGTCTGGACGCCGGCCTTTCATCGCGGGTAACTGGAAA
GAGAACCCTGATACTTTGGAAGCCGCGATTGACCTGGCCAAAGCG
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Synonyms
Publications