EWM22490.1, cds8164 (CDS) Nannochloropsis gaditana

Overview
NameEWM22490.1
Unique Namecds8164
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:48368..48598 -
Alignment locationKK037248.1:48071..48192 -
Alignment locationKK037248.1:47904..48015 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22490.1
Producttriosephosphate isomerase
Orig transcript idgnl|cribi|Naga_100011g1.3490.mrna
GeneTPI
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:48368..48598 -
KK037248.1supercontigKK037248.1:48071..48192 -
KK037248.1supercontigKK037248.1:47904..48015 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004807triose-phosphate isomerase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000652Triosephosphate_isomerase
IPR013785Aldolase_TIM
Homology
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|585102996|gb|EWM22490.1| (triosephosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 307.375 bits (786), Expect = 9.557e-106
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA 154
            MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA
Sbjct:    1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA 154          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|553184237|ref|XP_005854056.1| (triosephosphate isomerase, partial [Nannochloropsis gaditana CCMP526] >gi|422295004|gb|EKU22303.1| triosephosphate isomerase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.09 bits (562), Expect = 7.453e-71
Identity = 121/131 (92.37%), Postives = 123/131 (93.89%), Query Frame = 0
Query:    1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDL     G++ G  S
Sbjct:    1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLYTEDKGAYTGATS 131          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|551543654|ref|XP_005759977.1| (triose-phosphate isomerase [Emiliania huxleyi CCMP1516] >gi|551582950|ref|XP_005776912.1| hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516] >gi|485608179|gb|EOD07548.1| triose-phosphate isomerase [Emiliania huxleyi CCMP1516] >gi|485629102|gb|EOD24483.1| hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 87.4261 bits (215), Expect = 3.623e-18
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            R P +AGNWK N D L+ A+ LAKAVS  +  AS VDVAV VP PFL+PVKE L G  V +GAQD  W  +G+F G  S
Sbjct:    3 RTPLMAGNWKMNTD-LDEAVALAKAVSAEADKASGVDVAVCVPSPFLIPVKEALAGGKVGLGAQDCHWEDAGAFTGAIS 80          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|298709268|emb|CBJ31207.1| (Triose-phosphate isomerase [Ectocarpus siliculosus])

HSP 1 Score: 86.6557 bits (213), Expect = 7.816e-18
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 0
Query:    2 MRPLCLWTVAMLAASATAFIPHTAFRPSSPVATR-RCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKET---LKGSNVLIGAQDLPWGPSGSFAGTRSAG 133
            M+   L T+A L A +    P TAF  +    T  R S + S       M  R PFIAGNWK NP  +++A DLAK+VS A++S   V+VAV+ P PFLVPVK+    + G+ V +G+QDL    +G+F G  S G
Sbjct:    1 MKLTSLLTLAGLGAGSAFVAPATAFHGAGVTTTAPRGSSSASF-----QMMARVPFIAGNWKMNPLDVDSAKDLAKSVSEATTSV-EVEVAVIPPHPFLVPVKDQVDGVDGNKVAVGSQDLYTEDAGAFTGASSTG 130          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|1085030630|gb|OGS36309.1| (triose-phosphate isomerase [Elusimicrobia bacterium RIFOXYA2_FULL_69_6])

HSP 1 Score: 78.1814 bits (191), Expect = 1.378e-14
Identity = 48/102 (47.06%), Postives = 59/102 (57.84%), Query Frame = 0
Query:   53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGH---SSATRTKPSMPSSRRCW 151
            RRPFIAGNWK +  TL  +++LAKAV   + S S  +VAV VPF  L  V E LKGS+V +G QDL W   G+F G  SAG    + AT         RR +
Sbjct:    6 RRPFIAGNWKMHL-TLAQSVELAKAVRDGTKS-SPAEVAVCVPFTALTVVAEVLKGSHVKLGGQDLYWETQGAFTGEVSAGQLGDAGATHVIIGHSERRRLF 105          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|551630862|ref|XP_005818343.1| (hypothetical protein GUITHDRAFT_166901, partial [Guillardia theta CCMP2712] >gi|428162184|gb|EKX31363.1| hypothetical protein GUITHDRAFT_166901, partial [Guillardia theta CCMP2712])

HSP 1 Score: 76.2554 bits (186), Expect = 4.783e-14
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            M+ RRPFIAGNWK NP+++E A  LA  V    S  S   VA+ VP  +L  V +T+KGS+V +GAQ + +   G+F G  S
Sbjct:   43 MTSRRPFIAGNWKMNPESIEEAAKLAAGV-VEGSKGSKPQVAIFVPHAYLYTVGDTVKGSDVELGAQSVYYEEKGAFTGAVS 123          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|931371789|gb|KPJ62923.1| (triosephosphate isomerase [Planctomycetes bacterium DG_23])

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSA 132
            R+PFIAGNWK N  TL  A +L + +    +S    D+AV VPF +L  V E +KG+ +++GAQ+L W   G+F G  SA
Sbjct:    2 RKPFIAGNWKMNT-TLSEARELTQDLVEHMASVELCDLAVCVPFVYLFAVGEIVKGTKIVLGAQNLHWEEKGAFTGEVSA 80          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|146275153|dbj|BAF60902.1| (triosephosphate isomerase [Pelotomaculum thermopropionicum SI])

HSP 1 Score: 73.1738 bits (178), Expect = 9.957e-13
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            MS R+P IAGNWK    T+  A+  A+ + TA +    V++AV  PF  LVPV E L+G+ + +GAQD+ W  SG+F G  S
Sbjct:    1 MSARKPLIAGNWK-MFKTVPEAVAFAQELKTAVAGVDGVEIAVCPPFTALVPVAEALRGTGIAVGAQDVHWEESGAFTGEVS 81          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|918687048|ref|WP_052557228.1| (triose-phosphate isomerase [Gemmata sp. SH-PL17] >gi|1015447361|gb|AMV29145.1| Bifunctional PGK/TIM [Gemmata sp. SH-PL17])

HSP 1 Score: 73.1738 bits (178), Expect = 1.079e-12
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            M  R+ F+AGNWK N  TL  A  L  AV+    + +NV VAV  PFP+LVPV E +KGS V +GAQD+ +   G+F G  S
Sbjct:    1 MPTRKKFVAGNWKMNT-TLAEAKALGAAVAKGVGTDTNVTVAVCPPFPWLVPVGEAIKGSAVALGAQDVHYEKKGAFTGEVS 81          
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|861328410|gb|KMQ52988.1| (Triosephosphate isomerase [Chitinispirillum alkaliphilum])

HSP 1 Score: 72.7886 bits (177), Expect = 1.224e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
            R+ FIAGNWK N  TL+ A  LA+ V  A    ++VDVAV  P+  L+ V E +KGSNV +GAQD+ W   G++ G  S
Sbjct:    3 RKNFIAGNWKMNT-TLDEARKLAQEVVEAVGQNADVDVAVCPPYTNLLAVGEVIKGSNVKLGAQDVHWEAKGAYTGKVS 80          
The following BLAST results are available for this feature:
BLAST of EWM22490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102996|gb|EWM22490.1|9.557e-106100.00triosephosphate isomerase [Nannochloropsis gaditan... [more]
gi|553184237|ref|XP_005854056.1|7.453e-7192.37triosephosphate isomerase, partial [Nannochloropsi... [more]
gi|551543654|ref|XP_005759977.1|3.623e-1856.96triose-phosphate isomerase [Emiliania huxleyi CCMP... [more]
gi|298709268|emb|CBJ31207.1|7.816e-1842.65Triose-phosphate isomerase [Ectocarpus siliculosus... [more]
gi|1085030630|gb|OGS36309.1|1.378e-1447.06triose-phosphate isomerase [Elusimicrobia bacteriu... [more]
gi|551630862|ref|XP_005818343.1|4.783e-1446.34hypothetical protein GUITHDRAFT_166901, partial [G... [more]
gi|931371789|gb|KPJ62923.1|7.558e-1345.00triosephosphate isomerase [Planctomycetes bacteriu... [more]
gi|146275153|dbj|BAF60902.1|9.957e-1345.12triosephosphate isomerase [Pelotomaculum thermopro... [more]
gi|918687048|ref|WP_052557228.1|1.079e-1248.78triose-phosphate isomerase [Gemmata sp. SH-PL17] >... [more]
gi|861328410|gb|KMQ52988.1|1.224e-1248.10Triosephosphate isomerase [Chitinispirillum alkali... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8188rna8188Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications