EWM22490.1, cds8164 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|585102996|gb|EWM22490.1| (triosephosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 307.375 bits (786), Expect = 9.557e-106 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA 154
MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA
Sbjct: 1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGHSSATRTKPSMPSSRRCWLRA 154
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|553184237|ref|XP_005854056.1| (triosephosphate isomerase, partial [Nannochloropsis gaditana CCMP526] >gi|422295004|gb|EKU22303.1| triosephosphate isomerase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 221.09 bits (562), Expect = 7.453e-71 Identity = 121/131 (92.37%), Postives = 123/131 (93.89%), Query Frame = 0
Query: 1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDL G++ G S
Sbjct: 1 MMRPLCLWTVAMLAASATAFIPHTAFRPSSPVATRRCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLYTEDKGAYTGATS 131
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|551543654|ref|XP_005759977.1| (triose-phosphate isomerase [Emiliania huxleyi CCMP1516] >gi|551582950|ref|XP_005776912.1| hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516] >gi|485608179|gb|EOD07548.1| triose-phosphate isomerase [Emiliania huxleyi CCMP1516] >gi|485629102|gb|EOD24483.1| hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 87.4261 bits (215), Expect = 3.623e-18 Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0
Query: 53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
R P +AGNWK N D L+ A+ LAKAVS + AS VDVAV VP PFL+PVKE L G V +GAQD W +G+F G S
Sbjct: 3 RTPLMAGNWKMNTD-LDEAVALAKAVSAEADKASGVDVAVCVPSPFLIPVKEALAGGKVGLGAQDCHWEDAGAFTGAIS 80
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|298709268|emb|CBJ31207.1| (Triose-phosphate isomerase [Ectocarpus siliculosus]) HSP 1 Score: 86.6557 bits (213), Expect = 7.816e-18 Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 0
Query: 2 MRPLCLWTVAMLAASATAFIPHTAFRPSSPVATR-RCSRAVSRGTGVSMMSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKET---LKGSNVLIGAQDLPWGPSGSFAGTRSAG 133
M+ L T+A L A + P TAF + T R S + S M R PFIAGNWK NP +++A DLAK+VS A++S V+VAV+ P PFLVPVK+ + G+ V +G+QDL +G+F G S G
Sbjct: 1 MKLTSLLTLAGLGAGSAFVAPATAFHGAGVTTTAPRGSSSASF-----QMMARVPFIAGNWKMNPLDVDSAKDLAKSVSEATTSV-EVEVAVIPPHPFLVPVKDQVDGVDGNKVAVGSQDLYTEDAGAFTGASSTG 130
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|1085030630|gb|OGS36309.1| (triose-phosphate isomerase [Elusimicrobia bacterium RIFOXYA2_FULL_69_6]) HSP 1 Score: 78.1814 bits (191), Expect = 1.378e-14 Identity = 48/102 (47.06%), Postives = 59/102 (57.84%), Query Frame = 0
Query: 53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSAGH---SSATRTKPSMPSSRRCW 151
RRPFIAGNWK + TL +++LAKAV + S S +VAV VPF L V E LKGS+V +G QDL W G+F G SAG + AT RR +
Sbjct: 6 RRPFIAGNWKMHL-TLAQSVELAKAVRDGTKS-SPAEVAVCVPFTALTVVAEVLKGSHVKLGGQDLYWETQGAFTGEVSAGQLGDAGATHVIIGHSERRRLF 105
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|551630862|ref|XP_005818343.1| (hypothetical protein GUITHDRAFT_166901, partial [Guillardia theta CCMP2712] >gi|428162184|gb|EKX31363.1| hypothetical protein GUITHDRAFT_166901, partial [Guillardia theta CCMP2712]) HSP 1 Score: 76.2554 bits (186), Expect = 4.783e-14 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
M+ RRPFIAGNWK NP+++E A LA V S S VA+ VP +L V +T+KGS+V +GAQ + + G+F G S
Sbjct: 43 MTSRRPFIAGNWKMNPESIEEAAKLAAGV-VEGSKGSKPQVAIFVPHAYLYTVGDTVKGSDVELGAQSVYYEEKGAFTGAVS 123
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|931371789|gb|KPJ62923.1| (triosephosphate isomerase [Planctomycetes bacterium DG_23]) HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query: 53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRSA 132
R+PFIAGNWK N TL A +L + + +S D+AV VPF +L V E +KG+ +++GAQ+L W G+F G SA
Sbjct: 2 RKPFIAGNWKMNT-TLSEARELTQDLVEHMASVELCDLAVCVPFVYLFAVGEIVKGTKIVLGAQNLHWEEKGAFTGEVSA 80
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|146275153|dbj|BAF60902.1| (triosephosphate isomerase [Pelotomaculum thermopropionicum SI]) HSP 1 Score: 73.1738 bits (178), Expect = 9.957e-13 Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
MS R+P IAGNWK T+ A+ A+ + TA + V++AV PF LVPV E L+G+ + +GAQD+ W SG+F G S
Sbjct: 1 MSARKPLIAGNWK-MFKTVPEAVAFAQELKTAVAGVDGVEIAVCPPFTALVPVAEALRGTGIAVGAQDVHWEESGAFTGEVS 81
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|918687048|ref|WP_052557228.1| (triose-phosphate isomerase [Gemmata sp. SH-PL17] >gi|1015447361|gb|AMV29145.1| Bifunctional PGK/TIM [Gemmata sp. SH-PL17]) HSP 1 Score: 73.1738 bits (178), Expect = 1.079e-12 Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 50 MSGRRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
M R+ F+AGNWK N TL A L AV+ + +NV VAV PFP+LVPV E +KGS V +GAQD+ + G+F G S
Sbjct: 1 MPTRKKFVAGNWKMNT-TLAEAKALGAAVAKGVGTDTNVTVAVCPPFPWLVPVGEAIKGSAVALGAQDVHYEKKGAFTGEVS 81
BLAST of EWM22490.1 vs. NCBI_GenBank
Match: gi|861328410|gb|KMQ52988.1| (Triosephosphate isomerase [Chitinispirillum alkaliphilum]) HSP 1 Score: 72.7886 bits (177), Expect = 1.224e-12 Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 53 RRPFIAGNWKENPDTLEAAIDLAKAVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLPWGPSGSFAGTRS 131
R+ FIAGNWK N TL+ A LA+ V A ++VDVAV P+ L+ V E +KGSNV +GAQD+ W G++ G S
Sbjct: 3 RKNFIAGNWKMNT-TLDEARKLAQEVVEAVGQNADVDVAVCPPYTNLLAVGEVIKGSNVKLGAQDVHWEAKGAYTGKVS 80 The following BLAST results are available for this feature:
BLAST of EWM22490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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