rna8187, rna8187 (mRNA) Nannochloropsis gaditana

Overview
Namerna8187
Unique Namerna8187
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length510
Alignment locationKK037248.1:47273..47772 -

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Properties
Property NameValue
Producttriosephosphate isomerase
Orig transcript idgnl|cribi|Naga_103287g1.9934.mrna
Orig protein idgnl|cribi|Naga_103287g1.9934
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:47273..47772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103287g1gene7930Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22510.1cds8163Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8187rna8187-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8187 ID=rna8187|Name=rna8187|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGACTCGAAAACGACCTCGTAACGGACATGACAACAAACACATTGCGTG
CTCGCATCTTCTGCTTCAATCCTTTTCGAAACTCGTAAAGACGGGCTATC
GTGGAATTTATGTGGTGCTCGCTGCGCAGCCTGATGCGGCACTTAAGACA
CTTCTTCACGGGTGGAAGAGTATGGGCGGCAAGGGTAAAAGCATCGTGAT
TGTGGAGGATAAGGAGGGCTCTGACGCGGGAGCTGCGGCTGCTGACAATG
TTCAGAAGGAACAACTACGCCCTTCCTCTCCCCCCCGTCACGAGCACTGC
GCTCCCTGCCCCCCCCGCACGTCATACTGTGAATCTGCGCCGTTCTCGTG
GCCTTTGTTCATATCAAGACGTGCGAGATCGAACATCAGGCATGGCAAAA
AGCACCCGACTTGGTTGCCGCTTCCTCTGGAGGCTTCTAGGGCTGGTCGG
GCCGTTGCGCTTACTCACATTTACGCTCCCTCCCCCCCCGGTCCTGCCAG
GGGATCCTAG
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protein sequence of rna8187

>rna8187-protein ID=rna8187-protein|Name=rna8187|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVI
QYGGSVTPDTVDELMAMPDIDGVPGGGGIAGRGEVCADY
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mRNA from alignment at KK037248.1:47273..47772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8187 ID=rna8187|Name=rna8187|organism=Nannochloropsis gaditana|type=mRNA|length=500bp|location=Sequence derived from alignment at KK037248.1:47273..47772- (Nannochloropsis gaditana)
GTCCCAGGCCATCCTGTGCATCGGGGAGACCAGGGAGGAGTATGAGCTCG
GTGTGAACAAGCTCATCTGCGGGCTGCAGCTGGCGAAGGGCCTGAAGGGG
GTTACCAAGGTAGGTAACTGTCTCCCCCCTTTCCTTCCCTCTCCCCCCTT
CCCTTCCCTCTCCCTCCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCAGGAGCAAATGGAGAACGTGGCCATCGCCTACGAGCCCGTGTGGGC
GATCGGCACGGGCCTGACGGCCACCCCTGAGATCGCGCAAGACGTGCACT
CGAACATTCGCGCCATTCTGGGGGAGGCTTACGGGCAGGCGGTGGCCGAC
AAGGTGGTGATCCAGTATGGGGGCTCTGTCACGCCCGATACCGTGGATGA
GCTCATGGCCATGCCAGACATCGACGGGGTCCCTGGTGGGGGGGGCATCG
CTGGTCGGGGAGAAGTTTGCGCGGATTATTAACTTCAAATAGAAAGGGGG
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Coding sequence (CDS) from alignment at KK037248.1:47273..47772-

>rna8187 ID=rna8187|Name=rna8187|organism=Nannochloropsis gaditana|type=CDS|length=270bp|location=Sequence derived from alignment at KK037248.1:47273..47772- (Nannochloropsis gaditana)
ATGGAGAACGTGGCCATCGCCTACGAGCCCGTGTGGGCGATCGGCACGGG
CCTGACGGCCACCCCTGAGATCGCGCAAGACGTGCACTCGAACATTCGCG
CCATTCTGGGGGAGGCTTACGGGCAGGCGGTGGCCGACAAGGTGGTGATC
CAGTATGGGGGCTCTGTCACGCCCGATACCGTGGATGAGCTCATGGCCAT
GCCAGACATCGACGGGGTCCCTGGTGGGGGGGGCATCGCTGGTCGGGGAG
AAGTTTGCGCGGATTATTAA
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Synonyms
Publications