EWM22510.1, cds8163 (CDS) Nannochloropsis gaditana

Overview
NameEWM22510.1
Unique Namecds8163
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:47291..47560 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22510.1
Producttriosephosphate isomerase
Orig transcript idgnl|cribi|Naga_103287g1.9934.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:47291..47560 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004807triose-phosphate isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020861Triosephosphate_isomerase_AS
IPR013785Aldolase_TIM
IPR000652Triosephosphate_isomerase
Homology
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|585103017|gb|EWM22510.1| (triosephosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 177.563 bits (449), Expect = 2.070e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGGGIAGRGEVCADY 89
            MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGGGIAGRGEVCADY
Sbjct:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGGGIAGRGEVCADY 89          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|676391825|ref|XP_009039190.1| (hypothetical protein AURANDRAFT_29693 [Aureococcus anophagefferens] >gi|323450361|gb|EGB06243.1| hypothetical protein AURANDRAFT_29693 [Aureococcus anophagefferens])

HSP 1 Score: 106.686 bits (265), Expect = 6.687e-27
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    3 NVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGGG 78
            ++ IAYEPVWAIGTGL    ++AQ VH  +RA L E Y QAVAD V IQYGGSVTP++VDELM+MPDIDG   GG 
Sbjct:  129 DLVIAYEPVWAIGTGLVCPSDVAQSVHKTVRAFLAELYDQAVADAVRIQYGGSVTPESVDELMSMPDIDGCLVGGA 204          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|1210520102|dbj|GAX20985.1| (triosephosphate isomerase [Fistulifera solaris])

HSP 1 Score: 105.531 bits (262), Expect = 1.288e-26
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M+ V IAYEPVWAIGTG  ATPEIAQ+VH+  R IL E YG+ +ADK  I YGGSVTP++VD LMA PDIDG   GG
Sbjct:   95 MDKVVIAYEPVWAIGTGKVATPEIAQEVHAMCRGILAEMYGKEIADKTRILYGGSVTPESVDGLMAKPDIDGSLVGG 171          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|612398161|ref|XP_007514600.1| (triosephosphate isomerase [Bathycoccus prasinos] >gi|412986414|emb|CCO14840.1| triosephosphate isomerase [Bathycoccus prasinos])

HSP 1 Score: 111.309 bits (277), Expect = 1.593e-26
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGGG 78
            +EN+ IAYEPVWAIGTGLTATP IAQ VH  IR  + E Y ++VAD+V IQYGGSV PD+VDELM  PDIDG   GG 
Sbjct:  291 VENMIIAYEPVWAIGTGLTATPAIAQSVHKLIRNWIAEKYSKSVADRVRIQYGGSVKPDSVDELMQCPDIDGCLVGGA 368          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|1210511708|dbj|GAX29192.1| (hypothetical protein FisN_28Lh020 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.630e-26
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M  VAIAYEPVWAIGTG  ATPEIAQ VH+  R IL + YG A+AD+  I YGGSVTP++VD LMA PDIDG   GG
Sbjct:   78 MSRVAIAYEPVWAIGTGKVATPEIAQSVHATCRGILRDMYGDAIADQTRILYGGSVTPESVDGLMAQPDIDGALVGG 154          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|1085369359|gb|OGV40531.1| (triose-phosphate isomerase [Lentisphaerae bacterium GWF2_49_21])

HSP 1 Score: 106.686 bits (265), Expect = 1.664e-26
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M  V IAYEPVWAIGTG TA+P+ AQ+VH+ IR +L +A+G+AVADKV++QYGGSV  D   ELMA PDIDG   GG
Sbjct:  160 MHKVTIAYEPVWAIGTGKTASPDQAQEVHALIRKLLTDAFGKAVADKVIVQYGGSVKADNAKELMAKPDIDGALVGG 236          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|219112703|ref|XP_002178103.1| (triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410988|gb|EEC50917.1| triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.457 bits (267), Expect = 2.003e-26
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            +  VAIAYEPVWAIGTG  ATPEIAQ VH+  RA+L E YG   AD   I YGGSVTP++VD+LMAMPDIDG   GG
Sbjct:  197 LSRVAIAYEPVWAIGTGKVATPEIAQSVHAKCRAVLAEMYGPETADATRILYGGSVTPESVDDLMAMPDIDGALVGG 273          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|1210530581|dbj|GAX10806.1| (triosephosphate isomerase [Fistulifera solaris])

HSP 1 Score: 103.605 bits (257), Expect = 6.065e-26
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M+ V IAYEPVWAIGTG  ATPEIAQ+VH+  R IL E YG+ +AD+  I YGGSVTP++VD LMA PDIDG   GG
Sbjct:   95 MDKVVIAYEPVWAIGTGKVATPEIAQEVHAMCRGILAEMYGKEIADETRILYGGSVTPESVDGLMAKPDIDGSLVGG 171          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|145353513|ref|XP_001421055.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144581291|gb|ABO99348.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 104.76 bits (260), Expect = 7.480e-26
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M  V IAYEPVWAIGTGLTATP IAQ VH+ IR      YG++VA K+ IQYGGSV P+TVDELM  PD+DG   GG
Sbjct:  161 MSKVIIAYEPVWAIGTGLTATPAIAQSVHAGIRQWFRTNYGESVAAKIQIQYGGSVKPETVDELMQAPDVDGCLVGG 237          
BLAST of EWM22510.1 vs. NCBI_GenBank
Match: gi|224002643|ref|XP_002290993.1| (triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335] >gi|220972769|gb|EED91100.1| triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.76 bits (260), Expect = 1.421e-25
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    1 MENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPDTVDELMAMPDIDGVPGGG 77
            M  VAIAYEPVWAIGTG  ATPEIAQ+VH   R IL E Y Q  AD V I YGGSVTPD+VDELM+  DIDG   GG
Sbjct:  187 MSRVAIAYEPVWAIGTGKVATPEIAQNVHKQCRDILAEMYDQETADGVRILYGGSVTPDSVDELMSQEDIDGALVGG 263          
The following BLAST results are available for this feature:
BLAST of EWM22510.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103017|gb|EWM22510.1|2.070e-56100.00triosephosphate isomerase [Nannochloropsis gaditan... [more]
gi|676391825|ref|XP_009039190.1|6.687e-2765.79hypothetical protein AURANDRAFT_29693 [Aureococcus... [more]
gi|1210520102|dbj|GAX20985.1|1.288e-2667.53triosephosphate isomerase [Fistulifera solaris][more]
gi|612398161|ref|XP_007514600.1|1.593e-2667.95triosephosphate isomerase [Bathycoccus prasinos] >... [more]
gi|1210511708|dbj|GAX29192.1|1.630e-2667.53hypothetical protein FisN_28Lh020 [Fistulifera sol... [more]
gi|1085369359|gb|OGV40531.1|1.664e-2664.94triose-phosphate isomerase [Lentisphaerae bacteriu... [more]
gi|219112703|ref|XP_002178103.1|2.003e-2667.53triosephosphate isomerase [Phaeodactylum tricornut... [more]
gi|1210530581|dbj|GAX10806.1|6.065e-2666.23triosephosphate isomerase [Fistulifera solaris][more]
gi|145353513|ref|XP_001421055.1|7.480e-2666.23predicted protein, partial [Ostreococcus lucimarin... [more]
gi|224002643|ref|XP_002290993.1|1.421e-2568.83triose-phosphate isomerase [Thalassiosira pseudona... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8187rna8187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications