rna8186, rna8186 (mRNA) Nannochloropsis gaditana

Overview
Namerna8186
Unique Namerna8186
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length859
Alignment locationKK037248.1:43383..44076 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101124g1.2594.mrna
Orig protein idgnl|cribi|Naga_101124g1.2594
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:43383..44076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101124g1gene7929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8186rna8186-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22512.1cds8162Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8186 ID=rna8186|Name=rna8186|organism=Nannochloropsis gaditana|type=mRNA|length=859bp
TTACACACAGTCAAGGCAGAGTCGTCGATCGCACACGATCGGTTGGCGGA
CATGGTGGCAGTGCACGCGGCCGTGGCGGAAATCCAGTCCATGGCCTCGC
AGGCGGATCGGACTTCGCGTCAAAAATGCAAATATACGGAGCTGCTCACC
GAGCTGATGGACAGCTTTATCCCTCCTTCTTCCTCCTCTGCGCCAACCAC
CTCCCTGGTCTCCTTCGTCTCGGAGATGAAGGCGCTCGTCGACCACCTCC
TCTCCCCTCAGGTGTCCACGCTTGTCTCCAGGAGTGTGTTCGCCCATCTT
GGCCAGTCCTTGCTAGAAAGACTTCCCAGGCAGGGCAAGTATGCCTGCAG
CGAGGAACAACTCCAGGCCCTGCAGGATGTCGCGGAGTACGCGTTGGAAC
AAGGGGGGAGCCACACCCAAGCCTTCGAAGAGGCCGACGCCTCGGTCCGG
GAATTCCTCTTCGAGCATTTGAAAGCCCAGGGGTGCTACAGGTCTGCGGC
CAGTGTCCTGGCGGGCATGAACATGGACGCGAGCACGCGTCCCCTGAGCG
AAGACGCCAAGGCGGACACATACGTTAAGATCGCGGAGACCTTTTTGGTG
GAGGACCAGGCCGTAGAGGCCGAGGCCTTTGTGAACAGAGCCAGCGGGCT
GATGGAGGCGGTCACGGACTACTGGGTGCAGCTTCGCTACCGAGTCACCT
ACGCGAAGGTTCTGGACGCGAACCGGAAGTTTCTGGAAGCCGCCCTCCGC
TACCACGAGCTCAGTCAGACCCAACGTCGGGAGGTGCCCGAGGAAGAGCT
CTTGCTCCTGCTCGGGCGGGCCGTTACCTGCGCCATTCTAGGGAAGGCGG
GGCCGCAAC
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protein sequence of rna8186

>rna8186-protein ID=rna8186-protein|Name=rna8186|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MTRKRPRNGHDNKHIACSHLLLQSFSKLVKTGYRGIYVVLAAQPDAALKT
LLHGWKSMGGKGKSIVIVEDKEGSDAGAAAADNVQKEQLRPSSPPRHEHC
APCPPRTSYCESAPFSWPLFISRRARSNIRHGKKHPTWLPLPLEASRAGR
AVALTHIYAPSPPGPARGS
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mRNA from alignment at KK037248.1:43383..44076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8186 ID=rna8186|Name=rna8186|organism=Nannochloropsis gaditana|type=mRNA|length=694bp|location=Sequence derived from alignment at KK037248.1:43383..44076+ (Nannochloropsis gaditana)
ATGACTCGAAAACGACCTCGTAACGGACATGACAACAAACACATTGCGTG
CTCGCATCTTCTGCTTCAATCCTTTTCGAAACTCGTAAAGACGGGCTATC
GTGGAATTTATGTGGTGCTCGCTGCGCAGCCTGATGCGGGTGAGCAAGTA
TGAAGTTGGTCTCAGCATGACCAAGTAGTAAAAAACTCATGGTCCATCAC
ACGTTGACTCTCACACAGCACTTAAGACACTTCTTCACGGGTGGAAGAGT
ATGGGCGGCAAGGGTAAAAGCATCGTGATTGTGGAGGATAAGGAGGGCTC
TGACGCGGGAGCTGCGGCTGCTGACAATGTTCAGAAGGAACAACTACGGT
ACGTGATTGTTCTTTCGTACGCATTATTATATGTGCCTAGCATGGGCGTG
TTTGATGCATTGCATTGCCCGTCCTAAAAGCTCCCACGACTGGCTTGtcc
cagcccttcctctcccccccgtcacGAGCACTGcgctccctgcccccccc
gcacgTCATACTGTGAATCTGCGCCGTTCTCGTGGCCTTTGTTCATATCA
AGACGTGCGAGATCGAACATCAGGCATGGCAAAAAGCACCCGACTTGGTT
GCCGCTTCCTCTGGAGGCTTCTAGGGCTGGTCGGGCCGTTGCGCTTACTC
ACATTtacgctccctccccccccggtcctgCCAGGGGATCCTAG
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Coding sequence (CDS) from alignment at KK037248.1:43383..44076+

>rna8186 ID=rna8186|Name=rna8186|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at KK037248.1:43383..44076+ (Nannochloropsis gaditana)
ATGACTCGAAAACGACCTCGTAACGGACATGACAACAAACACATTGCGTG
CTCGCATCTTCTGCTTCAATCCTTTTCGAAACTCGTAAAGACGGGCTATC
GTGGAATTTATGTGGTGCTCGCTGCGCAGCCTGATGCGGCACTTAAGACA
CTTCTTCACGGGTGGAAGAGTATGGGCGGCAAGGGTAAAAGCATCGTGAT
TGTGGAGGATAAGGAGGGCTCTGACGCGGGAGCTGCGGCTGCTGACAATG
TTCAGAAGGAACAACTACGcccttcctctcccccccgtcacGAGCACTGc
gctccctgccccccccgcacgTCATACTGTGAATCTGCGCCGTTCTCGTG
GCCTTTGTTCATATCAAGACGTGCGAGATCGAACATCAGGCATGGCAAAA
AGCACCCGACTTGGTTGCCGCTTCCTCTGGAGGCTTCTAGGGCTGGTCGG
GCCGTTGCGCTTACTCACATTtacgctccctccccccccggtcctgCCAG
GGGATCCTAGATGACTCGAAAACGACCTCGTAACGGACATGACAACAAAC
ACATTGCGTGCTCGCATCTTCTGCTTCAATCCTTTTCGAAACTCGTAAAG
ACGGGCTATCGTGGAATTTATGTGGTGCTCGCTGCGCAGCCTGATGCGGC
ACTTAAGACACTTCTTCACGGGTGGAAGAGTATGGGCGGCAAGGGTAAAA
GCATCGTGATTGTGGAGGATAAGGAGGGCTCTGACGCGGGAGCTGCGGCT
GCTGACAATGTTCAGAAGGAACAACTACGcccttcctctcccccccgtca
cGAGCACTGcgctccctgccccccccgcacgTCATACTGTGAATCTGCGC
CGTTCTCGTGGCCTTTGTTCATATCAAGACGTGCGAGATCGAACATCAGG
CATGGCAAAAAGCACCCGACTTGGTTGCCGCTTCCTCTGGAGGCTTCTAG
GGCTGGTCGGGCCGTTGCGCTTACTCACATTtacgctccctccccccccg
gtcctgCCAGGGGATCCTAGATGACTCGAAAACGACCTCGTAACGGACAT
GACAACAAACACATTGCGTGCTCGCATCTTCTGCTTCAATCCTTTTCGAA
ACTCGTAAAGACGGGCTATCGTGGAATTTATGTGGTGCTCGCTGCGCAGC
CTGATGCGGCACTTAAGACACTTCTTCACGGGTGGAAGAGTATGGGCGGC
AAGGGTAAAAGCATCGTGATTGTGGAGGATAAGGAGGGCTCTGACGCGGG
AGCTGCGGCTGCTGACAATGTTCAGAAGGAACAACTACGcccttcctctc
ccccccgtcacGAGCACTGcgctccctgccccccccgcacgTCATACTGT
GAATCTGCGCCGTTCTCGTGGCCTTTGTTCATATCAAGACGTGCGAGATC
GAACATCAGGCATGGCAAAAAGCACCCGACTTGGTTGCCGCTTCCTCTGG
AGGCTTCTAGGGCTGGTCGGGCCGTTGCGCTTACTCACATTtacgctccc
tccccccccggtcctgCCAGGGGATCCTAG
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Synonyms
Publications