rna8183, rna8183 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8183
Unique Name	rna8183
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2237
Alignment location	KK037248.1:38048..40284 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100952g2.10079.mrna
Orig protein id	gnl\|cribi\|Naga_100952g2.10079
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:38048..40284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100952g2	gene7926	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8183	rna8183-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22514.1	cds8159	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:38048..40284+
coding sequence from alignment at KK037248.1:38048..40284+

mRNA sequence

>rna8183 ID=rna8183|Name=rna8183|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp
TGGCGAAAGCCATATGCGTGCGAAATGTGTGGTTGCAGCATGACGGAGCT
TTTGAAACGCTTTGAGGCAAGGCGGTAGAGGCGGACAAAACCAACGAGTG
GCTCCCGGGGGGGTTGATGTCGCTCCCTGAAGCATAGGCTTGCGTACGTC
GTGACTGCAACCTAGGGGTATCGGTGCTACTTCTTTCTTAATATATTGCC
ACGCTGCAGACACCACAGTTTCCGTCGTCACGATACGTACGTCGAATACG
GCGGGAGCACGCTGAAGGAGGAGGAGGAGGGCGCCGCGCACCGTAAATAA
TAAATGGCAAGATGGAAGGCGAGCTCAGGTGAGACCGCATCGGTGGATTC
GTCCCCTTTCGTGTTCCTTTTCCGGGTCTTTCCGCCTCCTTTTGGTTCAT
GGCCGCATTCTCTTTCTTTCTTTCCTCTACACACTGTCTTGCTTTATCCT
TCCTGGACTAATAATGCGATCTCCATATGTCATGATTTCCTTTTTTTTAT
CCCTCCCATCATGCCTCCCATCGCCTCCCACGCGCTTCCAGGTTATGCGA
AAGCGCTCAGGCGCAGTAGGTCAGAGCATGGACGCCTCCTCTTCCTCTCT
GTCCTTGTCGCTGCGTACAGCCGGCATATCTTCGTCACCCCCTTCCGTTG
CACCTACCCGTCCCGGCTGCCATCTGTCAGGGGCCAAGCCCCCCCTTGTT
CTGGAAGACTGCACGCGACCGCCACGACCCACATGCGCCGGTCGTCATCC
CCCCCGCCCTCCCCCTCCTCATCCTCCTCCTCCACCGTCCCGCGACCCTC
TGCCCCTTCCCCTCCGAGTCGCCGAAGAACCCCTTCCGTTTCCATCACCT
TCAGCGTCCCTCCTTCACCCCCCCTGCTCGACCCGGGCAGTCGCCTTCAG
CCCCCTCCACTGTCAGCACCCCGTTGCATCCCCGCCCCGCCGCGCCCCTC
TCCCTCACGGGGCCCTCCCGTTCCCGCCACCTCCACCACCCGCCGCGTCC
TCAACCTCCTCACCGACGCCCTCCCCGACCTCGACCCCTCCCTCCTTCCC
CTTCTGCCATCTTCGTTCTTCCAACAGCCCCCCGAACGCATCCAAGCACG
CCTCAGCTTCCTCCACACCACCCTCCCTGGCATCGATCTGCCTCACGCCC
TGCGTCGCGTCCCCAAGCTCCTCACGTACTACGGCATGGGCGCCCCGGCC
ATGGAACGTCGCCTCGCGCACACGTACTCCAATCTCATCGCCGCCCTTCC
CAAGAAACAGGCGGCCCTGAACCTCCTCAATGCGGCCCCTCGTCTCCTCC
TTCGGGACTTTGAGACGCGGATCGAACCCTATTTGCATACCTTCACCACG
ACCTCGCCCACCCTGGACGCAGCCTATCTGCTCACGCAGCACCCCGTCCT
CCTCCACAAGGGCATCGCTTCCCACCTCCTCCCCCGACTTGCCGCCCTGC
CTACTCTCTTCCCCCCCTCCTTCCCCCCTCCCGGCCCCGAAGACCTCGGC
GCCCTCCTCACTCGCTACCCCCCCCTCCTCACCCTCCCCCTCCCGGACCT
CTCCGCCCGCCTCGCCGCCCTCTCCCTCCTCCTCCCCCCCGACCTCCTCC
TCCCCACCCTCATCCGCCACCCCCGGGCATGGACGGCGGATCTGACCGAG
GTCATCGGGCCTCAGATCCACCTCCTCCTCTCCGCGCTCGGACCGACCAC
CACCAAGACCGTGCTCCACCACCTCCCTTCCATCCTCTATCACCCGCCCG
ACGCCCTCACCCACAAGCTCGACCTCCTCTCCTCCCTCCTCGGCTCCAGT
GCGGGCGCAAACGTCCTGCTGGCCCGCAATCCCATGATTCTGGCCATGGA
TATCGCCGCCAATGTCGCCCCCAAGTTAAGGTATCTGCACTCCCTCTTCC
CCCACATGGACGAAACCAGCTTCGTGAGCCTGGTCGGGAGCGCGGCCGGG
AGCCAGTGCCTGAGTGCTGCCTTTGGGCGGCTGGGGCGGTTGTCCTACCT
GCTACAGATCCAGCCGGACATGGACGTCGAGGAAGGGATGCGGCTAGTGG
GGGCGCCCTCGGAAGAACTCCGGCGCTGGTACCCCGGTTACGAGAACTTT
CTGGAAGATCGGATCGAGCCCCGTTTCCCCGCCTACTCGTGGGAGCAGCT
CTGCGCATTGCCGTTTGCGGTGCGGGAACAAGCCCATGGAGAGCTCCTGC
ACGGAGCGTTCAGCCGCGAGGAGGGAGGGAGAAGGGG

protein sequence of rna8183

>rna8183-protein ID=rna8183-protein|Name=rna8183|organism=Nannochloropsis gaditana|type=polypeptide|length=574bp
MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSR
LPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPP
SRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGP
PVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLH
TTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAA
LNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGI
ASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLA
ALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVL
HHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANV
APKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQP
DMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPF
AVREQAHGELLHGAFSREEGGRRG

mRNA from alignment at KK037248.1:38048..40284+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8183 ID=rna8183|Name=rna8183|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp|location=Sequence derived from alignment at KK037248.1:38048..40284+ (Nannochloropsis gaditana)
TGGCGAAAGCCATATGCGTGCGAAATGTGTGGTTGCAGCATGACGGAGCT
TTTGAAACGCTTTGAGGCAAGGCGGTAGAGGCGGACAAAACCAACGAGTG
GCTCCCGGGGGGGTTGATGTCGCTCCCTGAAGCATAGGCTTGCGTACGTC
GTGACTGCAACCTAGGGGTATCGGTGCTACTTCTTTCTTAATATATTGCC
ACGCTGCAGACACCACAGTTTCCGTCGTCACGATACGTACGTCGAATACG
GCGGGAGCAcgctgaaggaggaggaggagggcgccgcGCACCGTAAATAA
TAAATGGCAAGATGGAAGGCGAGCTCAGGTGAGACCGCATCGGTGGATTC
GTCCCCTTTCGTGTTCCTTTTCCGGGtctttccgcctccttttgGTTCAT
GGCCGcattctctttctttctttcctctacACACTGTCTTGCTTTATCCT
TCCTGGACTAATAATGCGATCTCCATATGTCAtgatttccttttttttat
CCCTCCCATCATGcctcccatcgcctcccACGCGCTTCCAGGTTATGCGA
AAGCGCTCAGGCGCAGTAGGTCAGAGCATGgacgcctcctcttcctctct
gtccttGTCGCTGCGTACAGCCGGCATATCTTCGTCACCCCCTTCCGTTG
CACCTACCCGTCCCGGCTGCCATCTGTCAGGGGCCAAGCCCCCCCTTGTT
CTGGAAGACTGCACGCGACCGCCACGACCCACATGCGCCGGTcgtcatcc
cccccgccctccccctcctcatcctcctcctccaccgtcccgcgaccctc
tgccccttcccctccgagTCGCCGAAGAACCCCTTCCGTTTCCATCACCT
TCagcgtccctccttcacccccccTGCTCGACCCGGGCAGTCGCCTTCAG
CCCCCTCCACTGTCAGCACCCCGTTGcatccccgccccgccgcgcccctc
tccctcacggggccctcccgttcccgccacctccaccacccgccgcgtcc
tcaacctcctcaccgacgccctccccgacctcgacccctccctccttccc
cttctgccATCTTCGTTCTTCCAACAGCCCCCCGAACGCATCCAAGCACG
CCTCAGCTTCCTCCacaccaccctccctggcaTCGATCTGCCTCACGCCC
TGCGTCGCGTCCCCAAGCTCCTCACGTACTACGGCATGGGCGCCCCGGCC
ATGGAACGTCGCCTCGCGCACACGTACTCCAATCTCATCGCCGCCCTTCC
CAAGAAACAGGCGGCCCTGAACCTCCTCAATGCggcccctcgtctcctcc
ttcgggaCTTTGAGACGCGGATCGAACCCTATTTGCATACCTTCACCACG
ACCTCGCCCACCCTGGACGCAGCCTATCTGCTCACGCAgcaccccgtcct
cctccacaaggGCATCgcttcccacctcctcccccgacttGCCGCCCTGC
Ctactctcttccccccctccttcccccctcccggccccgaagacctcggc
gccctcctcactcgctacccccccctcctcaccctccccctcccggacct
ctccgcccgcctcgccgccctctccctcctcctcccccccgacctcctcc
tccccaccctcatCCGCCACCCCCGGGCATGGACGGCGGATCTGACCGAG
GTCATCGGGCCTCAgatccacctcctcctctccgcgcTCGGACCGACCAC
CACCAAGACCgtgctccaccacctcccttccatcctctaTCACCCGCCCG
ACGCCCTCACCCACAagctcgacctcctctcctccctcctcggctcCAGT
GCGGGCGCAAACGTCCTGCTGGCCCGCAATCCCATGATTCTGGCCATGGA
TATCGCCGCCAATGTCGCCCCCAAGTTAAGGTATCTgcactccctcttcc
cccacatGGACGAAACCAGCTTCGTGAGCCTGGTCGGGAGCGCGGCCGGG
AGCCAGTGCCTGAGTGCTGCCTTTGGGCGGCTGGGGCGGTTGTCCTACCT
GCTACAGATCCAGCCGGACATGGacgtcgaggaagggatgcggCTAGTGG
GGGCGCCCTCGGAAGAACTCCGGCGCTGGTACCCCGGTTACGAGAACTTT
CTGGAAGATCGGATCGAGCCCCGTTTCCCCGCCTACTCGTGGGAGCAGCT
CTGCGCATTGCCGTTTGCGGTGCGGGAACAAGCCCATGGAGAGCTCCTGC
ACGGAGCGTTCagccgcgaggagggagggagaagggg

Coding sequence (CDS) from alignment at KK037248.1:38048..40284+

>rna8183 ID=rna8183|Name=rna8183|organism=Nannochloropsis gaditana|type=CDS|length=3442bp|location=Sequence derived from alignment at KK037248.1:38048..40284+ (Nannochloropsis gaditana)
ATGGCAAGATGGAAGGCGAGCTCAGGTTATGCGAAAGCGCTCAGGCGCAG
TAGGTCAGAGCATGgacgcctcctcttcctctctgtccttGTCGCTGCGT
ACAGCCGGCATATCTTCGTCACCCCCTTCCGTTGCACCTACCCGTCCCGG
CTGCCATCTGTCAGGGGCCAAGCCCCCCCTTGTTCTGGAAGACTGCACGC
GACCGCCACGACCCACATGCGCCGGTcgtcatcccccccgccctccccct
cctcatcctcctcctccaccgtcccgcgaccctctgccccttcccctccg
agTCGCCGAAGAACCCCTTCCGTTTCCATCACCTTCagcgtccctccttc
acccccccTGCTCGACCCGGGCAGTCGCCTTCAGCCCCCTCCACTGTCAG
CACCCCGTTGcatccccgccccgccgcgcccctctccctcacggggccct
cccgttcccgccacctccaccacccgccgcgtcctcaacctcctcaccga
cgccctccccgacctcgacccctccctccttccccttctgccATCTTCGT
TCTTCCAACAGCCCCCCGAACGCATCCAAGCACGCCTCAGCTTCCTCCac
accaccctccctggcaTCGATCTGCCTCACGCCCTGCGTCGCGTCCCCAA
GCTCCTCACGTACTACGGCATGGGCGCCCCGGCCATGGAACGTCGCCTCG
CGCACACGTACTCCAATCTCATCGCCGCCCTTCCCAAGAAACAGGCGGCC
CTGAACCTCCTCAATGCggcccctcgtctcctccttcgggaCTTTGAGAC
GCGGATCGAACCCTATTTGCATACCTTCACCACGACCTCGCCCACCCTGG
ACGCAGCCTATCTGCTCACGCAgcaccccgtcctcctccacaaggGCATC
gcttcccacctcctcccccgacttGCCGCCCTGCCtactctcttcccccc
ctccttcccccctcccggccccgaagacctcggcgccctcctcactcgct
acccccccctcctcaccctccccctcccggacctctccgcccgcctcgcc
gccctctccctcctcctcccccccgacctcctcctccccaccctcatCCG
CCACCCCCGGGCATGGACGGCGGATCTGACCGAGGTCATCGGGCCTCAga
tccacctcctcctctccgcgcTCGGACCGACCACCACCAAGACCgtgctc
caccacctcccttccatcctctaTCACCCGCCCGACGCCCTCACCCACAa
gctcgacctcctctcctccctcctcggctcCAGTGCGGGCGCAAACGTCC
TGCTGGCCCGCAATCCCATGATTCTGGCCATGGATATCGCCGCCAATGTC
GCCCCCAAGTTAAGGTATCTgcactccctcttcccccacatGGACGAAAC
CAGCTTCGTGAGCCTGGTCGGGAGCGCGGCCGGGAGCCAGTGCCTGAGTG
CTGCCTTTGGGCGGCTGGGGCGGTTGTCCTACCTGCTACAGATCCAGCCG
GACATGGacgtcgaggaagggatgcggCTAGTGGGGGCGCCCTCGGAAGA
ACTCCGGCGCTGGTACCCCGGTTACGAGAACTTTCTGGAAGATCGGATCG
AGCCCCGTTTCCCCGCCTACTCGTGGGAGCAGCTCTGCGCATTGCCGTTT
GCGGTGCGGGAACAAGCCCATGGAGAGCTCCTGCACGGAGCGTTCagccg
cgaggagggagggagaaggggATGGCAAGATGGAAGGCGAGCTCAGGTTA
TGCGAAAGCGCTCAGGCGCAGTAGGTCAGAGCATGgacgcctcctcttcc
tctctgtccttGTCGCTGCGTACAGCCGGCATATCTTCGTCACCCCCTTC
CGTTGCACCTACCCGTCCCGGCTGCCATCTGTCAGGGGCCAAGCCCCCCC
TTGTTCTGGAAGACTGCACGCGACCGCCACGACCCACATGCGCCGGTcgt
catcccccccgccctccccctcctcatcctcctcctccaccgtcccgcga
ccctctgccccttcccctccgagTCGCCGAAGAACCCCTTCCGTTTCCAT
CACCTTCagcgtccctccttcacccccccTGCTCGACCCGGGCAGTCGCC
TTCAGCCCCCTCCACTGTCAGCACCCCGTTGcatccccgccccgccgcgc
ccctctccctcacggggccctcccgttcccgccacctccaccacccgccg
cgtcctcaacctcctcaccgacgccctccccgacctcgacccctccctcc
ttccccttctgccATCTTCGTTCTTCCAACAGCCCCCCGAACGCATCCAA
GCACGCCTCAGCTTCCTCCacaccaccctccctggcaTCGATCTGCCTCA
CGCCCTGCGTCGCGTCCCCAAGCTCCTCACGTACTACGGCATGGGCGCCC
CGGCCATGGAACGTCGCCTCGCGCACACGTACTCCAATCTCATCGCCGCC
CTTCCCAAGAAACAGGCGGCCCTGAACCTCCTCAATGCggcccctcgtct
cctccttcgggaCTTTGAGACGCGGATCGAACCCTATTTGCATACCTTCA
CCACGACCTCGCCCACCCTGGACGCAGCCTATCTGCTCACGCAgcacccc
gtcctcctccacaaggGCATCgcttcccacctcctcccccgacttGCCGC
CCTGCCtactctcttccccccctccttcccccctcccggccccgaagacc
tcggcgccctcctcactcgctacccccccctcctcaccctccccctcccg
gacctctccgcccgcctcgccgccctctccctcctcctcccccccgacct
cctcctccccaccctcatCCGCCACCCCCGGGCATGGACGGCGGATCTGA
CCGAGGTCATCGGGCCTCAgatccacctcctcctctccgcgcTCGGACCG
ACCACCACCAAGACCgtgctccaccacctcccttccatcctctaTCACCC
GCCCGACGCCCTCACCCACAagctcgacctcctctcctccctcctcggct
cCAGTGCGGGCGCAAACGTCCTGCTGGCCCGCAATCCCATGATTCTGGCC
ATGGATATCGCCGCCAATGTCGCCCCCAAGTTAAGGTATCTgcactccct
cttcccccacatGGACGAAACCAGCTTCGTGAGCCTGGTCGGGAGCGCGG
CCGGGAGCCAGTGCCTGAGTGCTGCCTTTGGGCGGCTGGGGCGGTTGTCC
TACCTGCTACAGATCCAGCCGGACATGGacgtcgaggaagggatgcggCT
AGTGGGGGCGCCCTCGGAAGAACTCCGGCGCTGGTACCCCGGTTACGAGA
ACTTTCTGGAAGATCGGATCGAGCCCCGTTTCCCCGCCTACTCGTGGGAG
CAGCTCTGCGCATTGCCGTTTGCGGTGCGGGAACAAGCCCATGGAGAGCT
CCTGCACGGAGCGTTCagccgcgaggagggagggagaagggg

Synonyms

Publications