EWM22514.1, cds8159 (CDS) Nannochloropsis gaditana

Overview
NameEWM22514.1
Unique Namecds8159
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:38351..38375 +
Alignment locationKK037248.1:38589..40284 +

Link to JBrowse

Properties
Property NameValue
End range.
End range40284
Protein idEWM22514.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100952g2.10079.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:38351..38375 +
KK037248.1supercontigKK037248.1:38589..40284 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585103026|gb|EWM22514.1| (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 1118.22 bits (2891), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0
Query:    1 MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574
            MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG
Sbjct:    1 MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574          
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585103027|gb|EWM22515.1| (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 1098.58 bits (2840), Expect = 0.000e+0
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0
Query:    9 GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574
            GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG
Sbjct:   80 GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 645          
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|922853955|gb|KOO22528.1| (expressed unknown protein, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.8777 bits (198), Expect = 7.646e-13
Identity = 71/245 (28.98%), Postives = 108/245 (44.08%), Query Frame = 0
Query:  226 APAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFV 470
            APA++RR A     ++ A     AA  L+  AP +L  D E  +EP L       P +D   L+ + P +L   + + L PR+  L  + P         D+   + R P LL LP  DL  RLAAL  LLP                                  G ++++ V    PS+L + P+A+  KLD L+ L GS+A A  ++ R P +L  D+   +A K+R   +  P++D T  +
Sbjct:   57 APALDRRAA-----ILEAALGSDAARILMLRAPLVLASDLEWTLEPRLAALRELLPGVDIPTLVVRAPAVLELDLQTMLEPRVRQLEAMLPKGV------DVARTVRRAPTLLHLP--DLEQRLAALGALLP----------------------------------GVSSSQLV-SRAPSLLAYAPEAVVRKLDELAELFGSAANAAAMVKREPALLTYDVRHTLAAKVRVFETWLPNLDATKLL 253          
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585112413|gb|EWM29832.1| (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 66.2402 bits (160), Expect = 8.531e-8
Identity = 97/349 (27.79%), Postives = 153/349 (43.84%), Query Frame = 0
Query:  176 LLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARL----AALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTK----TVLHHLPSILYHPPD-ALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFV----SLVGSAAGS-----QCLSAAFGRLGRLSYLLQIQPDMDVEE 506
            L PL   +FF  P   I+ RL  L+   P  +    + RVP LL        A   R+A     L A LP  +  L L+  AP L+ +DF+++I+          P +D A ++  +P +L +   + L P++ AL  +FP        E+LG ++ R P LL+    D + RL      L+  LP   +     R P     +  +V     H  L AL P  T+     +++  PS+L    +  L  KL  L ++LGS+A A  L    P IL+ D+   V  +L+ L +  P  D   F+    + + SA G+       L + F R   L  +L  +P +  E+
Sbjct:   85 LQPLAGLAFF--PLGLIERRLEHLYALFPRENATSMVCRVPDLLCVEPNDLAA---RVAERQVQLAALLPACRP-LRLMAKAPILVFQDFDSQIKSTAERLEWELPGMDLARVVCPNPAVLTRAWDTVLFPQIVALRAIFP-------QENLGRIIMRRPDLLS---RDAAGRLREGMEGLARHLPSVKVEMLAARQPDILALEPRQVAARIKH--LEALFPAATRAEVAKMINRKPSLLLTSVERVLRPKLARLRNILGSAA-AQELCQTMPSILSRDL-EQVEARLKLLRAPVPGQDLVRFLRYNPAFLSSAPGAVGARLTALQSVFPRGVELGKMLIREPKLYAED 413          
The following BLAST results are available for this feature:
BLAST of EWM22514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103026|gb|EWM22514.1|0.000e+0100.00hypothetical protein Naga_100952g2, partial [Nanno... [more]
gi|585103027|gb|EWM22515.1|0.000e+0100.00hypothetical protein Naga_100952g2, partial [Nanno... [more]
gi|922853955|gb|KOO22528.1|7.646e-1328.98expressed unknown protein, partial [Chrysochromuli... [more]
gi|585112413|gb|EWM29832.1|8.531e-827.79Mitochodrial transcription termination factor [Nan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8183rna8183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications