EWM22514.1, cds8159 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585103026|gb|EWM22514.1| (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 1118.22 bits (2891), Expect = 0.000e+0 Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0
Query: 1 MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574
MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG
Sbjct: 1 MARWKASSGYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585103027|gb|EWM22515.1| (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 1098.58 bits (2840), Expect = 0.000e+0 Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0
Query: 9 GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 574
GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG
Sbjct: 80 GYAKALRRSRSEHGRLLFLSVLVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSPPPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQPPPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG 645
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|922853955|gb|KOO22528.1| (expressed unknown protein, partial [Chrysochromulina sp. CCMP291]) HSP 1 Score: 80.8777 bits (198), Expect = 7.646e-13 Identity = 71/245 (28.98%), Postives = 108/245 (44.08%), Query Frame = 0
Query: 226 APAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFV 470
APA++RR A ++ A AA L+ AP +L D E +EP L P +D L+ + P +L + + L PR+ L + P D+ + R P LL LP DL RLAAL LLP G ++++ V PS+L + P+A+ KLD L+ L GS+A A ++ R P +L D+ +A K+R + P++D T +
Sbjct: 57 APALDRRAA-----ILEAALGSDAARILMLRAPLVLASDLEWTLEPRLAALRELLPGVDIPTLVVRAPAVLELDLQTMLEPRVRQLEAMLPKGV------DVARTVRRAPTLLHLP--DLEQRLAALGALLP----------------------------------GVSSSQLV-SRAPSLLAYAPEAVVRKLDELAELFGSAANAAAMVKREPALLTYDVRHTLAAKVRVFETWLPNLDATKLL 253
BLAST of EWM22514.1 vs. NCBI_GenBank
Match: gi|585112413|gb|EWM29832.1| (Mitochodrial transcription termination factor [Nannochloropsis gaditana]) HSP 1 Score: 66.2402 bits (160), Expect = 8.531e-8 Identity = 97/349 (27.79%), Postives = 153/349 (43.84%), Query Frame = 0
Query: 176 LLPLLPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARL----AALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTK----TVLHHLPSILYHPPD-ALTHKLDLLSSLLGSSAGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFV----SLVGSAAGS-----QCLSAAFGRLGRLSYLLQIQPDMDVEE 506
L PL +FF P I+ RL L+ P + + RVP LL A R+A L A LP + L L+ AP L+ +DF+++I+ P +D A ++ +P +L + + L P++ AL +FP E+LG ++ R P LL+ D + RL L+ LP + R P + +V H L AL P T+ +++ PS+L + L KL L ++LGS+A A L P IL+ D+ V +L+ L + P D F+ + + SA G+ L + F R L +L +P + E+
Sbjct: 85 LQPLAGLAFF--PLGLIERRLEHLYALFPRENATSMVCRVPDLLCVEPNDLAA---RVAERQVQLAALLPACRP-LRLMAKAPILVFQDFDSQIKSTAERLEWELPGMDLARVVCPNPAVLTRAWDTVLFPQIVALRAIFP-------QENLGRIIMRRPDLLS---RDAAGRLREGMEGLARHLPSVKVEMLAARQPDILALEPRQVAARIKH--LEALFPAATRAEVAKMINRKPSLLLTSVERVLRPKLARLRNILGSAA-AQELCQTMPSILSRDL-EQVEARLKLLRAPVPGQDLVRFLRYNPAFLSSAPGAVGARLTALQSVFPRGVELGKMLIREPKLYAED 413 The following BLAST results are available for this feature:
BLAST of EWM22514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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