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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100952g2.10080.mrna |
| Orig protein id | gnl|cribi|Naga_100952g2.10080 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:38048..40284 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8182 ID=rna8182|Name=rna8182|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp
TTCAAGGGAGGGTTTATGGTAACCGCGAGTCTATAAATGTAGATGTAATC
TTAACCCCGCAGATTAAGGCTCTTATCATTCATAGATTTTTTTATAATCT
CTCGCTGCTCTGACAGCTTGAATTCTCAGAGATGTCACATCGTTTGTATG
TTGTTCCTTAATATCTTCTCTCTCCCTCTCCCTCCTCCCCGGCTGCAACA
CTAATTTAAGGCTTGCGGACACAAATCAGTACCGACATGCCCTCCTCTGC
AAAAGGCAATGAATCTGCTACAACACAAGCCATCGCGCCACTTCGCGTGG
CACTTCTCGGCATGTTTTTGTCTGCTGTTCTCGCCCTTTTCTTCGCCCAG
GACCACCCCTACCTAACTGCAGTGCCCTGCGTCCTCATCAACTGCTTCTT
TCTGCAGATCTCTTTCTTTCACGGCCTCCTCTTTTCGCTCATAGAAATCC
CGTGGATGATGCTCCTATTCTTCCCCATCCAGTACATTTTCCGCATTCCT
TGCCAGTACGCTTTTTTTTGGCTGTACTCTCCCATACTCATCATTTTGGC
CCGCCGGCGCAAGGACAGGCATTCCCTGTTAGGGCGCCTCTTCATCACGT
ACGTATGGGACCCGCCTTTGCTGGCCTGTATTTGGCTGGTGGCTCATACG
GGGTGGGGAGGGGACCGTTTCCTATCGCCGTTTGCGAGCGTCATCGACGA
AGACGTGGTGATGGGCTCCCTGCCTCTCCCCCAGGACGTGCCTCAACTCG
CCAAGGACTTCGGCGTCGGGGCCGTGGTGAATATGACCCGAGAGTACGCC
GGTCCACTGGTCGCCTACGCGCAGCATGGCATCAGACACCTGCATCTTCC
CACAGTGGACACAGCGGCGCCCACGCTGGAGCAGGTAGGGGGACGGGCCG
AAGGGGGGCGGGGGGGGTCGCGCGCGAATCTTGGATGTGAATCTTAGATT
CATGGAAATCCTCGGGGTGGTAATTGGCTGCGCCTGGCGTCCTACCTGTG
AAAACTCTGGCAGGACACTCCCTAGCACTTTCCGGAGGTGCAGAATGGCT
GGCATGGCGTCTGTGAGGAGCGTAGAAGCCACTCCCCGGCGCGGGCGAAT
GCCTCCTTGTCTAACCCTCCTTTCGAGCCCTTAGGTTGTGTCCCTCCCTC
CGTTTTCCTTCCCGCTGTCCCCTAGGTCCACGAGGGCGTGGCCTTCATTG
AGAGCTTCCTTCGCGAGAACCCCGGGAAGCGGGTCTTCATCCATTGCAAG
GGAGGGAGGGGGCGGGCGGCCGTGATGGCGGCCGCGTGGTACTTGAAGAA
GGAGGGAGGGAGGGAGGGGCCGAGGGAGGTGGTGCGTCGGCTGAAAGAGA
AACGGCATGTGGTGTCAACGGCTGTGGGGAGGTACGAGACTGTCTTGGAG
TATCACGCGTGGGTGGTGGGGGA back to topprotein sequence of rna8182 >rna8182-protein ID=rna8182-protein|Name=rna8182|organism=Nannochloropsis gaditana|type=polypeptide|length=645bp
MARWKASSGETASVDSSPFVFLFRVFPPPFGSWPHSLSFFPLHTVLLYPS
WTNNAISICHDFLFFIPPIMPPIASHALPGYAKALRRSRSEHGRLLFLSV
LVAAYSRHIFVTPFRCTYPSRLPSVRGQAPPCSGRLHATATTHMRRSSSP
PPSPSSSSSSTVPRPSAPSPPSRRRTPSVSITFSVPPSPPLLDPGSRLQP
PPLSAPRCIPAPPRPSPSRGPPVPATSTTRRVLNLLTDALPDLDPSLLPL
LPSSFFQQPPERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAM
ERRLAHTYSNLIAALPKKQAALNLLNAAPRLLLRDFETRIEPYLHTFTTT
SPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGA
LLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEV
IGPQIHLLLSALGPTTTKTVLHHLPSILYHPPDALTHKLDLLSSLLGSSA
GANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGS
QCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFL
EDRIEPRFPAYSWEQLCALPFAVREQAHGELLHGAFSREEGGRRG back to topmRNA from alignment at KK037248.1:38048..40284+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8182 ID=rna8182|Name=rna8182|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp|location=Sequence derived from alignment at KK037248.1:38048..40284+ (Nannochloropsis gaditana)
TGGCGAAAGCCATATGCGTGCGAAATGTGTGGTTGCAGCATGACGGAGCT
TTTGAAACGCTTTGAGGCAAGGCGGTAGAGGCGGACAAAACCAACGAGTG
GCTCCCGGGGGGGTTGATGTCGCTCCCTGAAGCATAGGCTTGCGTACGTC
GTGACTGCAACCTAGGGGTATCGGTGCTACTTCTTTCTTAATATATTGCC
ACGCTGCAGACACCACAGTTTCCGTCGTCACGATACGTACGTCGAATACG
GCGGGAGCAcgctgaaggaggaggaggagggcgccgcGCACCGTAAATAA
TAAATGGCAAGATGGAAGGCGAGCTCAGGTGAGACCGCATCGGTGGATTC
GTCCCCTTTCGTGTTCCTTTTCCGGGtctttccgcctccttttgGTTCAT
GGCCGcattctctttctttctttcctctacACACTGTCTTGCTTTATCCT
TCCTGGACTAATAATGCGATCTCCATATGTCAtgatttccttttttttat
CCCTCCCATCATGcctcccatcgcctcccACGCGCTTCCAGGTTATGCGA
AAGCGCTCAGGCGCAGTAGGTCAGAGCATGgacgcctcctcttcctctct
gtccttGTCGCTGCGTACAGCCGGCATATCTTCGTCACCCCCTTCCGTTG
CACCTACCCGTCCCGGCTGCCATCTGTCAGGGGCCAAGCCCCCCCTTGTT
CTGGAAGACTGCACGCGACCGCCACGACCCACATGCGCCGGTcgtcatcc
cccccgccctccccctcctcatcctcctcctccaccgtcccgcgaccctc
tgccccttcccctccgagTCGCCGAAGAACCCCTTCCGTTTCCATCACCT
TCagcgtccctccttcacccccccTGCTCGACCCGGGCAGTCGCCTTCAG
CCCCCTCCACTGTCAGCACCCCGTTGcatccccgccccgccgcgcccctc
tccctcacggggccctcccgttcccgccacctccaccacccgccgcgtcc
tcaacctcctcaccgacgccctccccgacctcgacccctccctccttccc
cttctgccATCTTCGTTCTTCCAACAGCCCCCCGAACGCATCCAAGCACG
CCTCAGCTTCCTCCacaccaccctccctggcaTCGATCTGCCTCACGCCC
TGCGTCGCGTCCCCAAGCTCCTCACGTACTACGGCATGGGCGCCCCGGCC
ATGGAACGTCGCCTCGCGCACACGTACTCCAATCTCATCGCCGCCCTTCC
CAAGAAACAGGCGGCCCTGAACCTCCTCAATGCggcccctcgtctcctcc
ttcgggaCTTTGAGACGCGGATCGAACCCTATTTGCATACCTTCACCACG
ACCTCGCCCACCCTGGACGCAGCCTATCTGCTCACGCAgcaccccgtcct
cctccacaaggGCATCgcttcccacctcctcccccgacttGCCGCCCTGC
Ctactctcttccccccctccttcccccctcccggccccgaagacctcggc
gccctcctcactcgctacccccccctcctcaccctccccctcccggacct
ctccgcccgcctcgccgccctctccctcctcctcccccccgacctcctcc
tccccaccctcatCCGCCACCCCCGGGCATGGACGGCGGATCTGACCGAG
GTCATCGGGCCTCAgatccacctcctcctctccgcgcTCGGACCGACCAC
CACCAAGACCgtgctccaccacctcccttccatcctctaTCACCCGCCCG
ACGCCCTCACCCACAagctcgacctcctctcctccctcctcggctcCAGT
GCGGGCGCAAACGTCCTGCTGGCCCGCAATCCCATGATTCTGGCCATGGA
TATCGCCGCCAATGTCGCCCCCAAGTTAAGGTATCTgcactccctcttcc
cccacatGGACGAAACCAGCTTCGTGAGCCTGGTCGGGAGCGCGGCCGGG
AGCCAGTGCCTGAGTGCTGCCTTTGGGCGGCTGGGGCGGTTGTCCTACCT
GCTACAGATCCAGCCGGACATGGacgtcgaggaagggatgcggCTAGTGG
GGGCGCCCTCGGAAGAACTCCGGCGCTGGTACCCCGGTTACGAGAACTTT
CTGGAAGATCGGATCGAGCCCCGTTTCCCCGCCTACTCGTGGGAGCAGCT
CTGCGCATTGCCGTTTGCGGTGCGGGAACAAGCCCATGGAGAGCTCCTGC
ACGGAGCGTTCagccgcgaggagggagggagaagggg back to topCoding sequence (CDS) from alignment at KK037248.1:38048..40284+ >rna8182 ID=rna8182|Name=rna8182|organism=Nannochloropsis gaditana|type=CDS|length=1934bp|location=Sequence derived from alignment at KK037248.1:38048..40284+ (Nannochloropsis gaditana)
ATGGCAAGATGGAAGGCGAGCTCAGGTGAGACCGCATCGGTGGATTCGTC
CCCTTTCGTGTTCCTTTTCCGGGtctttccgcctccttttgGTTCATGGC
CGcattctctttctttctttcctctacACACTGTCTTGCTTTATCCTTCC
TGGACTAATAATGCGATCTCCATATGTCAtgatttccttttttttatCCC
TCCCATCATGcctcccatcgcctcccACGCGCTTCCAGGTTATGCGAAAG
CGCTCAGGCGCAGTAGGTCAGAGCATGgacgcctcctcttcctctctgtc
cttGTCGCTGCGTACAGCCGGCATATCTTCGTCACCCCCTTCCGTTGCAC
CTACCCGTCCCGGCTGCCATCTGTCAGGGGCCAAGCCCCCCCTTGTTCTG
GAAGACTGCACGCGACCGCCACGACCCACATGCGCCGGTcgtcatccccc
ccgccctccccctcctcatcctcctcctccaccgtcccgcgaccctctgc
cccttcccctccgagTCGCCGAAGAACCCCTTCCGTTTCCATCACCTTCa
gcgtccctccttcacccccccTGCTCGACCCGGGCAGTCGCCTTCAGCCC
CCTCCACTGTCAGCACCCCGTTGcatccccgccccgccgcgcccctctcc
ctcacggggccctcccgttcccgccacctccaccacccgccgcgtcctca
acctcctcaccgacgccctccccgacctcgacccctccctccttcccctt
ctgccATCTTCGTTCTTCCAACAGCCCCCCGAACGCATCCAAGCACGCCT
CAGCTTCCTCCacaccaccctccctggcaTCGATCTGCCTCACGCCCTGC
GTCGCGTCCCCAAGCTCCTCACGTACTACGGCATGGGCGCCCCGGCCATG
GAACGTCGCCTCGCGCACACGTACTCCAATCTCATCGCCGCCCTTCCCAA
GAAACAGGCGGCCCTGAACCTCCTCAATGCggcccctcgtctcctccttc
gggaCTTTGAGACGCGGATCGAACCCTATTTGCATACCTTCACCACGACC
TCGCCCACCCTGGACGCAGCCTATCTGCTCACGCAgcaccccgtcctcct
ccacaaggGCATCgcttcccacctcctcccccgacttGCCGCCCTGCCta
ctctcttccccccctccttcccccctcccggccccgaagacctcggcgcc
ctcctcactcgctacccccccctcctcaccctccccctcccggacctctc
cgcccgcctcgccgccctctccctcctcctcccccccgacctcctcctcc
ccaccctcatCCGCCACCCCCGGGCATGGACGGCGGATCTGACCGAGGTC
ATCGGGCCTCAgatccacctcctcctctccgcgcTCGGACCGACCACCAC
CAAGACCgtgctccaccacctcccttccatcctctaTCACCCGCCCGACG
CCCTCACCCACAagctcgacctcctctcctccctcctcggctcCAGTGCG
GGCGCAAACGTCCTGCTGGCCCGCAATCCCATGATTCTGGCCATGGATAT
CGCCGCCAATGTCGCCCCCAAGTTAAGGTATCTgcactccctcttccccc
acatGGACGAAACCAGCTTCGTGAGCCTGGTCGGGAGCGCGGCCGGGAGC
CAGTGCCTGAGTGCTGCCTTTGGGCGGCTGGGGCGGTTGTCCTACCTGCT
ACAGATCCAGCCGGACATGGacgtcgaggaagggatgcggCTAGTGGGGG
CGCCCTCGGAAGAACTCCGGCGCTGGTACCCCGGTTACGAGAACTTTCTG
GAAGATCGGATCGAGCCCCGTTTCCCCGCCTACTCGTGGGAGCAGCTCTG
CGCATTGCCGTTTGCGGTGCGGGAACAAGCCCATGGAGAGCTCCTGCACG
GAGCGTTCagccgcgaggagggagggagaagggg back to top
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