rna8181, rna8181 (mRNA) Nannochloropsis gaditana

Overview
Namerna8181
Unique Namerna8181
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2268
Alignment locationKK037248.1:35998..37742 -

Link to JBrowse

Properties
Property NameValue
Productprotein-tyrosine phosphatase mitochondrial
Orig transcript idgnl|cribi|Naga_100952g1.10081.mrna
Orig protein idgnl|cribi|Naga_100952g1.10081
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:35998..37742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100952g1gene7925Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8181rna8181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22516.1cds8157Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8181 ID=rna8181|Name=rna8181|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp
CATGCATGCACAATTTGTGGATCGGTTCAACGTCCAAAACAGCATAGTAC
GGGGAGACGCCCCCAAAATAAAGCGATTGTTGCTCTGTAAACAGAATTGG
ACCTCGACTCTCTCTTTGCTTGGTGATTGAACAACCCTAGCCGCAGGTTA
CAAGCTTCAGCCAAGTGCGAGTTTCAGTCCGTGCTACGGCCCCGTGGGCA
CTGTGACTCTCTTCTTCACAGTTGAAGAGTAGTTGTGGTAATGCACGGCT
GCCTGTCCTTATGTATTGCTGGTTTGCTCGGGGTATAAACGGTATCTGAG
CTCCATCAAGCCATTACTTGAGAGCTAGATGACCTTATCCAGGATTTATT
TGCTCGATCAATGACTCAAAATGAGAAATTGCCTCACTCTTTGCTGTCAA
TTATCCCCCTTACAACATTGCAGAGGGCATGATGAGGCAACGGTCCTCAT
CATCACAACTATGCAGGCCACTTTCATGGGGTCTCCTCGTCCTAGCCGTC
TCGCACTCCGTCCGTGTGCAGGCTTTCCAAGTGCCCGTGTCACGGCCTGC
CGCCTTCACGCGGGCGAGAATACCGTTTCACCGTGATACCACGCCCTTTG
TACAGAAAAGCAGGAGCACTACTTTTTCTCCTTCCTCTTCCTCGCTACCG
GTGTTGCCGCATGATGCAGACAAGGCCGTGGGTCAACGCGGACGTTCTTT
TTCCTTCTCCTTCCCCCTTGCCTCCCTCTTCAAGCCCGCACACCGCTCCA
ACAAGCCCCAGAAAAGGACGGCCTCAAATTCTCTGAGAATATTGCTGAGC
GTCCTGGCCGTCGTTTGTCTGACGGGCACCGTGGCCCATGCTCTACCCAA
GCAGGTGGTCTCCGCTTCCCTGACTCACCCTGGAAGCAGTCTCCTCTCCG
CTGCCACGGCCTCGGCAGCCCCATTTTCCATTCTTCAAGAGAGTCTTGCC
AAGACACTTGGCCAGGGGCCCCTGGCCCCCGTTGCCGTCCTGCTCTCCTG
GTTGCTGGACGTGCTGGAGGTGGGGGCGGACCTGAGTGGCGCCCTCTTCC
GCCTCCTCCTCTGGCCCCTCCTAACCCCCCTCAACCTCCTCCTCCGCCAC
GTCCTGCTCCCTGTGCTCCCTTTCTCCCGCTCGCTCCTCACTAGCCCCCA
AGGTACCCTCCTCCCCATCTTGACTCAACTCCTCCATGGCCTGGGCTCCT
CCCTCGCCCAGCTCCAAGGGGGTCTTGCGGCCTACGCCAACGGGATCCTC
GCCCTCCTTCTCTCTACGCTCGGGATTATTTATCAGACCTTTTGCAACGG
TCTCGGGCTTTTTTTCAACCTCCCCGGCCTTCAATTTTTCGACGGCATGG
ACCCTCGGCTGCAAATTCCCTCCACCCCGATCCGCTTTGTCCTTCCCTCC
TCCCCATCCTCCGTCCCGGCCTCCCTCCCTACCTCTTCAGGGTCCACCTT
CTCCCTCCGGCAAATGTACGGCCGCCGCTGGCGCGTCCACGCCGGCAAGT
GGAGCTGGGTGGTCCCGTACTGGGAGCGTGTGGTCATGGAGGCACAGCTC
GCCCGGTACCAAAACACCTTTGAGAAGAGCGCGATCAAAGCCCGCTTCGG
CTTTCCGGAGGTGGTTCGAGGCCCGTCTCCCTTCTTGGGGGGGACCTTGA
TCATATTGACGCTCTTCTACCTGATCTACCGGGGACACGTGACCAGCGCC
ATATGGATCCGACAGCTGCAGAAGGAGACTTATGGGGACAGGGCGTGGAG
CCCGCAGACCCGGTTGGAGGAGGAAGAGGGGGAAGGCGAGGGAGAAGGGG
GGGGGGGAGGACGGGGGCCGGGAATGAGGAAGGCCTATTGAGAGAGTAGG
AGGAAGGAGGGGGGAGGCTGGTCCTCGTCCCCTCAGTGGACGTGGAGGAG
GAGGGAAGCGGTTGAGACTGTTAAGGTTAGTGTTAGGAAGAGGAGTGGAG
GAGGGGGAGACGTCGTGTGTCGCGGAGGGCGGGCGACACAGCGGGGAGGG
AGCGGGGAGGTTGGAGGCACGAACGGTAGGTTCCCTTGCCTGCCGTCCGG
GAGCTCGTTCGGTGTTGTCCTGTGTAGGATGATGCAAAGGGGCTATGGAG
AGATCCAAATTCGATGGAAAAGGCCGAGATGGCTCGGTTAGGGCGGTGTT
TCAGAAGCCGTTTCTGGCGGTGGCACGCCTTGATTGGCATCGAAGGGTGC
AGACATGTCAAGACTTGGAAGCAATTTGTGGCGTGACCGGCGAGTGAAAG
CGCGTGTATGTGCATTCC
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protein sequence of rna8181

>rna8181-protein ID=rna8181-protein|Name=rna8181|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVL
INCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPI
LIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFA
SVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIR
HLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES
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mRNA from alignment at KK037248.1:35998..37742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8181 ID=rna8181|Name=rna8181|organism=Nannochloropsis gaditana|type=mRNA|length=1745bp|location=Sequence derived from alignment at KK037248.1:35998..37742- (Nannochloropsis gaditana)
TTCAAGGGAGGGTTTATGGTAACCGCGAGTCTATAAATGTAGATGTAATC
TTAACCCCGCAGATTAAGGCTCTTATCATTCATAGATTTTTTTATAATCT
CTCGCTGCTCTGACAGCTTGAATTCTCAGAGATGTCACATCGTTTGTATG
TTGTTCCTTAATATCTTCTCTCTCCCTCTCCCTCCTCCCCGGCTGCAACA
CTAATTTAAGGCTTGCGGACACAAATCAGTACCGACATGCCCTCCTCTGC
AAAAGGCAATGAATCTGCTACAACACAAGCCATCGCGCCACTTCGCGTGG
CACTTCTCGGCATGTTTTTGTCTGCTGTTCTCGCCCTTTTCTTCGCCCAG
GACCACCCCTACCTAACTGCAGTGCCCTGCGTCCTCATCAACTGCTTCTT
TCTGCAGATCTCTTTCTTTCACGGCCTCCTCTTTTCGCTCATAGAAATCC
CGTGGATGATGCTCCTATTCTTCCCCATCCAGTACATTTTCCGCATTCCT
TGCCAGTACGCTTTTTTTTGGCTGTACTCTCCCATACTCATCATTTTGGC
CCGCCGGCGCAAGGACAGGCATTCCCTGTTAGGGCGCCTCTTCATCACGT
ACGTATGGGACCCGCCTTTGCTGGCCTGTATTTGGCTGGTGGCTCATACG
GGGTGGGGAGGGGACCGTTTCCTATCGCCGTTTGCGAGCGTCATCGACGA
AGACGTGGTGATGGTGAGTGTGAAGAGAGGGGGAGGGAGTGGGTGGGGTG
GATAGGAAAGGGAGGGAGAGCGGGATGGATAGGAAAGGGAGGGATTGCGT
TGATAATGAACCAATCTTCGTCGGATACCTTTGAACCCTTATCGTCCTCC
ACACCGTCCTCCATCCTCATTACAATCTTTCCTCCCTCCTCATCACTATC
TCTCCTCCCTCCCTCGCTGCCCTCCACACCTCACCCCTCCACTCTCCTCA
CCCGCCATCCGTCAACCCTGCTATCCTGAAGTATGCCTAGAGACCTCATT
CCCCCCCCCCCATCCCCTCCTTCCCTCCTCCTTAGGGCTCCCTGCCTCTC
CCCCAGGACGTGCCTCAACTCGCCAAGGACTTCGGCGTCGGGGCCGTGGT
GAATATGACCCGAGAGTACGCCGGTCCACTGGTCGCCTACGCGCAGCATG
GCATCAGACACCTGCATCTTCCCACAGTGGACACAGCGGCGCCCACGCTG
GAGCAGGTAGGGGGACGGGCCGAAGGGGGGCGGGGGGGGTCGCGCGCGAA
TCTTGGATGTGAATCTTAGATTCATGGAAATCCTCGGGGTGGTAATTGGC
TGCGCCTGGCGTCCTACCTGTGAAAACTCTGGCAGGACACTCCCTAGCAC
TTTCCGGAGGTGCAGAATGGCTGGCATGGCGTCTGTGAGGAGCGTAGAAG
CCACTCCCCGGCGCGGGCGAATGCCTCCTTGTCTAACCCTCCTTTCGAGC
CCTTAGGTTGTGTCCCTCCCTCCGTTTTCCTTCCCGCTGTCCCCTAGGTC
CACGAGGGCGTGGCCTTCATTGAGAGCTTCCTTCGCGAGAACCCCGGGAA
GCGGGTCTTCATCCATTGCAAGGGAGGGAGGGGGCGGGCGGCCGTGATGG
CGGCCGCGTGGTACTTGAAGAAGGAGGGAGGGAGGGAGGGGCCGAGGGAG
GTGGTGCGTCGGCTGAAAGAGAAACGGCATGTGGTGTCAACGGCTGTGGG
GAGGTACGAGACTGTCTTGGAGTATCACGCGTGGGTGGTGGGGGA
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Coding sequence (CDS) from alignment at KK037248.1:35998..37742-

>rna8181 ID=rna8181|Name=rna8181|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at KK037248.1:35998..37742- (Nannochloropsis gaditana)
GGCTCCCTGCCTCTCCCCCAGGACGTGCCTCAACTCGCCAAGGACTTCGG
CGTCGGGGCCGTGGTGAATATGACCCGAGAGTACGCCGGTCCACTGGTCG
CCTACGCGCAGCATGGCATCAGACACCTGCATCTTCCCACAGTGGACACA
GCGGCGCCCACGCTGGAGCAGGTAGGGGGACGGGCCGAAGGGGGGCGGGG
GGGGTCGCGCGCGAATCTTGGATGTGAATCTTAGATGCCCTCCTCTGCAA
AAGGCAATGAATCTGCTACAACACAAGCCATCGCGCCACTTCGCGTGGCA
CTTCTCGGCATGTTTTTGTCTGCTGTTCTCGCCCTTTTCTTCGCCCAGGA
CCACCCCTACCTAACTGCAGTGCCCTGCGTCCTCATCAACTGCTTCTTTC
TGCAGATCTCTTTCTTTCACGGCCTCCTCTTTTCGCTCATAGAAATCCCG
TGGATGATGCTCCTATTCTTCCCCATCCAGTACATTTTCCGCATTCCTTG
CCAGTACGCTTTTTTTTGGCTGTACTCTCCCATACTCATCATTTTGGCCC
GCCGGCGCAAGGACAGGCATTCCCTGTTAGGGCGCCTCTTCATCACGTAC
GTATGGGACCCGCCTTTGCTGGCCTGTATTTGGCTGGTGGCTCATACGGG
GTGGGGAGGGGACCGTTTCCTATCGCCGTTTGCGAGCGTCATCGACGAAG
ACGTGGTGATGGGCTCCCTGCCTCTCCCCCAGGACGTGCCTCAACTCGCC
AAGGACTTCGGCGTCGGGGCCGTGGTGAATATGACCCGAGAGTACGCCGG
TCCACTGGTCGCCTACGCGCAGCATGGCATCAGACACCTGCATCTTCCCA
CAGTGGACACAGCGGCGCCCACGCTGGAGCAGGTAGGGGGACGGGCCGAA
GGGGGGCGGGGGGGGTCGCGCGCGAATCTTGGATGTGAATCTTAGATGCC
CTCCTCTGCAAAAGGCAATGAATCTGCTACAACACAAGCCATCGCGCCAC
TTCGCGTGGCACTTCTCGGCATGTTTTTGTCTGCTGTTCTCGCCCTTTTC
TTCGCCCAGGACCACCCCTACCTAACTGCAGTGCCCTGCGTCCTCATCAA
CTGCTTCTTTCTGCAGATCTCTTTCTTTCACGGCCTCCTCTTTTCGCTCA
TAGAAATCCCGTGGATGATGCTCCTATTCTTCCCCATCCAGTACATTTTC
CGCATTCCTTGCCAGTACGCTTTTTTTTGGCTGTACTCTCCCATACTCAT
CATTTTGGCCCGCCGGCGCAAGGACAGGCATTCCCTGTTAGGGCGCCTCT
TCATCACGTACGTATGGGACCCGCCTTTGCTGGCCTGTATTTGGCTGGTG
GCTCATACGGGGTGGGGAGGGGACCGTTTCCTATCGCCGTTTGCGAGCGT
CATCGACGAAGACGTGGTGATG
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Synonyms
Publications