EWM22516.1, cds8157 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|585103028|gb|EWM22516.1| (protein-tyrosine phosphatase mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 482.256 bits (1240), Expect = 3.376e-172 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES 236
MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES
Sbjct: 1 MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES 236
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|676384087|ref|XP_009035322.1| (hypothetical protein AURANDRAFT_14750, partial [Aureococcus anophagefferens] >gi|323454666|gb|EGB10536.1| hypothetical protein AURANDRAFT_14750, partial [Aureococcus anophagefferens]) HSP 1 Score: 71.2478 bits (173), Expect = 3.805e-12 Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0
Query: 148 PFASVIDEDVVMGSLPLPQDVPQL-AKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLE 215
PFAS+ID+D+V G++P DVP+L + V AVVNM +E+ GP AYA HG+ LP DT AP+ +
Sbjct: 1 PFASIIDDDIVQGAMPFALDVPELVGAPYNVCAVVNMCKEWPGPTAAYAAHGVAQCRLPFQDTTAPSED 69
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1072238483|gb|OEU23210.1| (phosphatases II [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.9366 bits (167), Expect = 4.599e-11 Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 145 FLSPFASVIDEDVVMGSLPLPQDVPQLAKD-FGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLE 215
L+PFA+++D+ +V GSLP P D+ LA + + VG +VNM REY G + GI HLP DT PT E
Sbjct: 1 MLAPFANILDDSIVQGSLPFPSDIATLAAEPYNVGLIVNMCREYNGAVDKMKHFGIVQCHLPHQDTTPPTYE 72
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1056718104|ref|WP_068142629.1| (phosphatase [Roseimaritima ulvae]) HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-10 Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 0
Query: 149 FASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE----GGRGGSRANLGCES 236
+++ ID ++++G+ P +DVP++A D GV AVVN EY GP+ AYA GI LH+PT D P LE + E +GG+ + C++
Sbjct: 35 WSTRIDANLIVGAYPFARDVPKMAAD-GVRAVVNTCEEYPGPVDAYALAGIEQLHIPTTDFTHPRLEDIEQAVEFIEQHAQGGATTYVHCKA 125
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1129176090|gb|OLP84688.1| (Dicer-like protein 1 [Symbiodinium microadriaticum]) HSP 1 Score: 71.2478 bits (173), Expect = 1.394e-10 Identity = 57/162 (35.19%), Postives = 69/162 (42.59%), Query Frame = 0
Query: 101 LIILARRRKDRHSLLGRLFITYVWDPPLL------------ACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGG---------RAEGGRG-------GSRANLGC 234
L IL R D GRL + WD PLL W G G+ S ID + MG PL + VP L + V +VVNMT E+ GP+ Y QHGI L LPT+DT P+LE + +A GGRG G R C
Sbjct: 889 LSILNRASPDTIWPGGRLLLKCFWDAPLLLISYAADTVFSSVLPWPFFFNGKNGE-----LVSDIDAQLCMGGRPLARHVPILL-EHEVHSVVNMTEEWHGPVEVYKQHGIEQLQLPTLDTTPPSLEHLRDGVAFVRARLKATGGRGRIYIHCKGGRGRASC 1044
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|330793689|ref|XP_003284915.1| (hypothetical protein DICPUDRAFT_86492 [Dictyostelium purpureum] >gi|325085131|gb|EGC38544.1| hypothetical protein DICPUDRAFT_86492 [Dictyostelium purpureum]) HSP 1 Score: 68.1662 bits (165), Expect = 2.920e-10 Identity = 30/101 (29.70%), Postives = 56/101 (55.45%), Query Frame = 0
Query: 140 WGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE----GGRGGSRANLGCES 236
W G R P S ID++V +G++P+ ++ L + + +VVN+ EY GP+ Y ++GI L++P VD PT++++ + G+R + C++
Sbjct: 73 WAGLR--GPLISQIDDNVYLGAMPMSYNIEMLVSKYQINSVVNLCDEYNGPIQQYTRYGITQLYIPVVDHYEPTVQEIKSSIDFIQRQVESGNRVFIHCKA 171
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1200236557|gb|OUT60246.1| (phosphatase [Rhodopirellula sp. TMED11]) HSP 1 Score: 67.3958 bits (163), Expect = 3.075e-10 Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0
Query: 153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE 222
IDE+V++G+ P P+DV L + GV AVVN EYAGPL Y HGI L +PT D P L + E
Sbjct: 30 IDENVILGAYPFPRDVAALRSE-GVAAVVNTCEEYAGPLDQYRNHGIEQLRIPTTDFTPPKLASIEAAVE 98
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|496386328|ref|WP_009095318.1| (hypothetical protein [Rhodopirellula sp. SWK7] >gi|460848266|gb|EMI45795.1| hypothetical protein RRSWK_01686 [Rhodopirellula sp. SWK7]) HSP 1 Score: 66.2402 bits (160), Expect = 7.227e-10 Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
ID+ V++G+ P +DV LA GV AVVN EY GP+ Y +HGI LH+PTVD PT+E V
Sbjct: 39 IDDHVIVGARPFARDVNALAA-IGVRAVVNTCEEYGGPVEEYGRHGIVQLHIPTVDFTHPTIENV 102
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|836668333|ref|WP_047816305.1| (phosphatase [Rhodopirellula islandica]) HSP 1 Score: 64.6994 bits (156), Expect = 2.405e-9 Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0
Query: 153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
ID V++G+ P +DV +LAK VG VVN EY GP+ YA+HGI LHLP D P+L+ V
Sbjct: 30 IDPLVIVGARPFARDVAELAK-LNVGGVVNTCEEYCGPVEEYAKHGIEQLHLPITDFTHPSLQDV 93
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|495952444|ref|WP_008677023.1| (protein-tyrosine-phosphatase [Rhodopirellula sallentina] >gi|460933046|gb|EMI56528.1| Protein-tyrosine phosphatase [Rhodopirellula sallentina SM41]) HSP 1 Score: 64.6994 bits (156), Expect = 2.464e-9 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
IDE V++G+ P +DV LA GV AVVN EY GP+ Y +HGI LH+PTVD PT++ +
Sbjct: 39 IDEFVIVGARPFTRDVNALAA-LGVRAVVNTCEEYGGPVEEYGRHGIVQLHIPTVDFTHPTIDNI 102 The following BLAST results are available for this feature:
BLAST of EWM22516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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