EWM22516.1, cds8157 (CDS) Nannochloropsis gaditana

Overview
NameEWM22516.1
Unique Namecds8157
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:37030..37506 -
Alignment locationKK037248.1:36474..36707 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22516.1
Productprotein-tyrosine phosphatase mitochondrial
Orig transcript idgnl|cribi|Naga_100952g1.10081.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:37030..37506 -
KK037248.1supercontigKK037248.1:36474..36707 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029021Prot-tyrosine_phosphatase-like
Homology
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|585103028|gb|EWM22516.1| (protein-tyrosine phosphatase mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 482.256 bits (1240), Expect = 3.376e-172
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES 236
            MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES
Sbjct:    1 MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAEGGRGGSRANLGCES 236          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|676384087|ref|XP_009035322.1| (hypothetical protein AURANDRAFT_14750, partial [Aureococcus anophagefferens] >gi|323454666|gb|EGB10536.1| hypothetical protein AURANDRAFT_14750, partial [Aureococcus anophagefferens])

HSP 1 Score: 71.2478 bits (173), Expect = 3.805e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0
Query:  148 PFASVIDEDVVMGSLPLPQDVPQL-AKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLE 215
            PFAS+ID+D+V G++P   DVP+L    + V AVVNM +E+ GP  AYA HG+    LP  DT AP+ +
Sbjct:    1 PFASIIDDDIVQGAMPFALDVPELVGAPYNVCAVVNMCKEWPGPTAAYAAHGVAQCRLPFQDTTAPSED 69          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1072238483|gb|OEU23210.1| (phosphatases II [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9366 bits (167), Expect = 4.599e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
Query:  145 FLSPFASVIDEDVVMGSLPLPQDVPQLAKD-FGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLE 215
             L+PFA+++D+ +V GSLP P D+  LA + + VG +VNM REY G +      GI   HLP  DT  PT E
Sbjct:    1 MLAPFANILDDSIVQGSLPFPSDIATLAAEPYNVGLIVNMCREYNGAVDKMKHFGIVQCHLPHQDTTPPTYE 72          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1056718104|ref|WP_068142629.1| (phosphatase [Roseimaritima ulvae])

HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-10
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 0
Query:  149 FASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE----GGRGGSRANLGCES 236
            +++ ID ++++G+ P  +DVP++A D GV AVVN   EY GP+ AYA  GI  LH+PT D   P LE +    E      +GG+   + C++
Sbjct:   35 WSTRIDANLIVGAYPFARDVPKMAAD-GVRAVVNTCEEYPGPVDAYALAGIEQLHIPTTDFTHPRLEDIEQAVEFIEQHAQGGATTYVHCKA 125          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1129176090|gb|OLP84688.1| (Dicer-like protein 1 [Symbiodinium microadriaticum])

HSP 1 Score: 71.2478 bits (173), Expect = 1.394e-10
Identity = 57/162 (35.19%), Postives = 69/162 (42.59%), Query Frame = 0
Query:  101 LIILARRRKDRHSLLGRLFITYVWDPPLL------------ACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGG---------RAEGGRG-------GSRANLGC 234
            L IL R   D     GRL +   WD PLL               W     G  G+       S ID  + MG  PL + VP L  +  V +VVNMT E+ GP+  Y QHGI  L LPT+DT  P+LE +           +A GGRG       G R    C
Sbjct:  889 LSILNRASPDTIWPGGRLLLKCFWDAPLLLISYAADTVFSSVLPWPFFFNGKNGE-----LVSDIDAQLCMGGRPLARHVPILL-EHEVHSVVNMTEEWHGPVEVYKQHGIEQLQLPTLDTTPPSLEHLRDGVAFVRARLKATGGRGRIYIHCKGGRGRASC 1044          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|330793689|ref|XP_003284915.1| (hypothetical protein DICPUDRAFT_86492 [Dictyostelium purpureum] >gi|325085131|gb|EGC38544.1| hypothetical protein DICPUDRAFT_86492 [Dictyostelium purpureum])

HSP 1 Score: 68.1662 bits (165), Expect = 2.920e-10
Identity = 30/101 (29.70%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  140 WGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE----GGRGGSRANLGCES 236
            W G R   P  S ID++V +G++P+  ++  L   + + +VVN+  EY GP+  Y ++GI  L++P VD   PT++++    +        G+R  + C++
Sbjct:   73 WAGLR--GPLISQIDDNVYLGAMPMSYNIEMLVSKYQINSVVNLCDEYNGPIQQYTRYGITQLYIPVVDHYEPTVQEIKSSIDFIQRQVESGNRVFIHCKA 171          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|1200236557|gb|OUT60246.1| (phosphatase [Rhodopirellula sp. TMED11])

HSP 1 Score: 67.3958 bits (163), Expect = 3.075e-10
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0
Query:  153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQVGGRAE 222
            IDE+V++G+ P P+DV  L  + GV AVVN   EYAGPL  Y  HGI  L +PT D   P L  +    E
Sbjct:   30 IDENVILGAYPFPRDVAALRSE-GVAAVVNTCEEYAGPLDQYRNHGIEQLRIPTTDFTPPKLASIEAAVE 98          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|496386328|ref|WP_009095318.1| (hypothetical protein [Rhodopirellula sp. SWK7] >gi|460848266|gb|EMI45795.1| hypothetical protein RRSWK_01686 [Rhodopirellula sp. SWK7])

HSP 1 Score: 66.2402 bits (160), Expect = 7.227e-10
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0
Query:  153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
            ID+ V++G+ P  +DV  LA   GV AVVN   EY GP+  Y +HGI  LH+PTVD   PT+E V
Sbjct:   39 IDDHVIVGARPFARDVNALAA-IGVRAVVNTCEEYGGPVEEYGRHGIVQLHIPTVDFTHPTIENV 102          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|836668333|ref|WP_047816305.1| (phosphatase [Rhodopirellula islandica])

HSP 1 Score: 64.6994 bits (156), Expect = 2.405e-9
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0
Query:  153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
            ID  V++G+ P  +DV +LAK   VG VVN   EY GP+  YA+HGI  LHLP  D   P+L+ V
Sbjct:   30 IDPLVIVGARPFARDVAELAK-LNVGGVVNTCEEYCGPVEEYAKHGIEQLHLPITDFTHPSLQDV 93          
BLAST of EWM22516.1 vs. NCBI_GenBank
Match: gi|495952444|ref|WP_008677023.1| (protein-tyrosine-phosphatase [Rhodopirellula sallentina] >gi|460933046|gb|EMI56528.1| Protein-tyrosine phosphatase [Rhodopirellula sallentina SM41])

HSP 1 Score: 64.6994 bits (156), Expect = 2.464e-9
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0
Query:  153 IDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
            IDE V++G+ P  +DV  LA   GV AVVN   EY GP+  Y +HGI  LH+PTVD   PT++ +
Sbjct:   39 IDEFVIVGARPFTRDVNALAA-LGVRAVVNTCEEYGGPVEEYGRHGIVQLHIPTVDFTHPTIDNI 102          
The following BLAST results are available for this feature:
BLAST of EWM22516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103028|gb|EWM22516.1|3.376e-172100.00protein-tyrosine phosphatase mitochondrial [Nannoc... [more]
gi|676384087|ref|XP_009035322.1|3.805e-1249.28hypothetical protein AURANDRAFT_14750, partial [Au... [more]
gi|1072238483|gb|OEU23210.1|4.599e-1145.83phosphatases II [Fragilariopsis cylindrus CCMP1102... [more]
gi|1056718104|ref|WP_068142629.1|1.144e-1039.13phosphatase [Roseimaritima ulvae][more]
gi|1129176090|gb|OLP84688.1|1.394e-1035.19Dicer-like protein 1 [Symbiodinium microadriaticum... [more]
gi|330793689|ref|XP_003284915.1|2.920e-1029.70hypothetical protein DICPUDRAFT_86492 [Dictyosteli... [more]
gi|1200236557|gb|OUT60246.1|3.075e-1047.14phosphatase [Rhodopirellula sp. TMED11][more]
gi|496386328|ref|WP_009095318.1|7.227e-1050.77hypothetical protein [Rhodopirellula sp. SWK7] >gi... [more]
gi|836668333|ref|WP_047816305.1|2.405e-949.23phosphatase [Rhodopirellula islandica][more]
gi|495952444|ref|WP_008677023.1|2.464e-949.23protein-tyrosine-phosphatase [Rhodopirellula salle... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8181rna8181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications