|
|
Properties
| Property Name | Value |
|---|
| Product | tpr repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100769g2.4210.mrna |
| Orig protein id | gnl|cribi|Naga_100769g2.4210 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:25066..25950 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8177 ID=rna8177|Name=rna8177|organism=Nannochloropsis gaditana|type=mRNA|length=1960bp
CCCTGGCGCGTTTTGTGCCAAAATGGCGGCGGCGGCCGGCAAATTCAGAG
CCGCAAGCGGCAGGATTTGGGAGGTTAGTGACGGAGGCCGATGATAGTTG
TTGAGTGCATGTCACTTGCTGTATGCGAAGCGGAGGGCAATGAAAATCAA
TTCGTCACGTAAACATACACCATAGGCGTGCATTGGCTTGGAAGTCCACG
CGCAAATCCGGGTGCGAAGCAAGCTCTTTTCAGGGGCCTCGGCGCAGGTC
ACAGACTACGATCGACCCAACACGCGCGTAGGCCTATTAGATGCCGCAAT
GCCAGGGACCCTGCCTGTCCTCAACAAGGAGGCTGTGCACCAATCCCTCC
GGACCGCCCTCGCCCTCGGCTGCCAAGTCCATCCGGTCTCCCGTTTCGAG
CGCAAGCACTATTTCTATTGCGACCTGCCACAGGGGTACCAGATCACGCA
GCAGGCATCGCCCATTGCCACCGGCGGCTCCCTTCTGGTAGAGCCCCCCC
TCCACGAAAACCAACGGCAGCGAGCGCCCAGGAAGAGAAACGCGTCCTCC
CCACACCCCGGACTCGAGGGAGACGACCCGGAGGAAGCCGCCTGGCCCCC
CTTCCGCGTGCGCATAGCCCGCCTCCAGATCGAACAGGACTCGGGGAAGT
CTACGCACGACTCGGCGGGAGGGAGGCACACCCTTGTGGACCTGAACAGG
GCGGGCGTGGCCCTGATGGAGATCGTCTTCGAGCCTGAGCTCTCCAGCCC
ATCCCAAGCAGCTGCTTGCCTTCGGAGTTTACAGGCCACGCTCCGCGCCC
TGGACTCCTGCGACGGCCTGATGGAGGAGGGCTCCCTCCGCTGCGATTTG
AACGTGTCGGTGCGGCCCGCCCCTCCCTCCCCCGCCTTTCCCCCGGGGCC
CTGGGGGCCTCGGGTGGAAGTCAAAAATTTAAATTCCTTGAAAGCGCTGC
AAACGGCCGCGGCGTTTGAAATTCAACGGCAGATCGCCCTCCACGACCCC
GGCGACGCCTCGCGGGCGGGCATGGCCGGGACCGAGGGTGGACAGGACCT
CAGCCGTTTCAACGGCCATTTCGAATTCAAATCGGTGGAACGGGAGACTC
GGGCGTTCAACGCGGCGACGGGCGAAACGACGCGGATGCGTGGAAAGGAA
GGAGCAGTGGACTACCGTTTTTTTCCGGAGCCCGACCTCCCCCCCCTGGT
GCTGGACATGGACTGGGTGGAGGCAGTGAGACGAGGCCTGCCGGAGTTGC
CGCAGGCGACCCGATCGAGGCTCGTGGAGGAGCATGGCCTGACGCCGGCG
CAGGCAGAGGTCCTGATCGGGGAGGGGGAGGCGGCCGTGGGTTTTTTTGA
GGACGTGGTGCGGGGCGGGGGAGGGAGGGAGGGGAGAGGGGTAGCCAATT
GGGTGTGCAACGACTTGATAGGGTTGGTAAAGGCGAAAGCGTCAGCTGGC
AAGGGAGGGAAGGGTTGTGCAGTCGTCGCCTCCCCCTACACCTCCTCTCC
TGCCTTGACGGGACAGGCAGGGGCGTCTCCCACAGCCAGCTATGCCGTCC
ATCCCGAGGCGATGGGCGAGTTGATCGACATGGTGTCTGGTGGAGAGATC
TCCATCCGGACGGGAAAAGAAGTGCTGGCCCTGATGGTGGCAGGAGGGAG
TGAAGACGAGGAGGGAGGAGGGAGGGGGGGGGAGAAGCGACAGAGGCCGC
GGGAGATTGTGGCGGCGCGAGGGTGGGGACAGGTGAGCGACGAGACTGTG
CTGATCGGGGTGGCGAGGAACGTGGTGAGGGACCCCGGGAGTGCACGGCA
GCGACGGCAGTACAAGGAAGGAAAAGAGAAGCAGATGATGAAGTTCTTTG
TCGGGCAGGCGATGAAGGAGACAGGGGGACGGGCGCACCCGGGGAGAATG
GAAACGTTGCTGAGGGTGGAGCTGCGCAAGGCGGAGGAGGAGGAGATGGG
AGGGAAATGA back to topprotein sequence of rna8177 >rna8177-protein ID=rna8177-protein|Name=rna8177|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQG
EELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGK
LYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLH
KAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNE
EQMNFNMLGQVGPVGGASLSA back to topmRNA from alignment at KK037248.1:25066..25950+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8177 ID=rna8177|Name=rna8177|organism=Nannochloropsis gaditana|type=mRNA|length=885bp|location=Sequence derived from alignment at KK037248.1:25066..25950+ (Nannochloropsis gaditana)
ATGCCTGGAGCTACAGTCCGGCTTGTTAAGCTTCCTGCCCTCTTATtcgc
cattttcttccttctcgtcgcCTTCATCCATGTTTATGCTTCCAACATCG
AAGAAGACGTACTGGAGGGGAAAGATATTTCCAGCATGGTGGcacaagga
gaggaattgGTGAACTCACGAATGTTCACCGAGGCCAAGGTAATCctgcg
ggaggcaggggaaatggggcgagggaaaggagcgggaggcgcaggaggag
gctgtaCGGGCCAAAACCTCACAAATCAAACGTAGATGGATCTGACAAAA
GGCACAAGGCATGCTCTGACTCATTccttcatctctttctcctcattGAA
GACCATCCTCTCCGAagcccttgccctctcccccgccttcctccctgccc
tcatCCAGCTTGGCCGCGCCCATGCATTCACAGGAAATTTTAAGGAGGCA
GAGCGCCTCTATTCACAGGCCTTGTCGTCGGACCCGTCTTTTGCGCCGGC
TCACACCTCTCTTGGGAAGCTGTACTTGTACCAGAAAGAAACGGCCCGAG
CGTTGCAGGCGTTTGAAAAAGCCTTAGAGCTCTCCCCAGGGGACGGAGAC
GCGCTCTTGGGCTTGGCAAGGCTGGAAGCCCTCCAGGCTCACCAAGCAGG
GGGCGAAGAGAGGCTGCACAAGGCGGCCGCATTGTACGCGGCGGCGGTGC
GGACGTCTCCGGCGGACTCCTACGAATCCGCCTGGTTCGACTACGGGGTG
GTGCTGGGCCGCCTGGGGAGacacgaggaggcggcagagaAGCTGGAGCG
TGCCGTGGCCATGAATGAGGAGCAGATGAACTTCAACATGCTGGGCCAGG
TCGGTCCTGTGGGCGGGGCCTCCCTCAGTGCGTGA back to topCoding sequence (CDS) from alignment at KK037248.1:25066..25950+ >rna8177 ID=rna8177|Name=rna8177|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at KK037248.1:25066..25950+ (Nannochloropsis gaditana)
ATGCCTGGAGCTACAGTCCGGCTTGTTAAGCTTCCTGCCCTCTTATtcgc
cattttcttccttctcgtcgcCTTCATCCATGTTTATGCTTCCAACATCG
AAGAAGACGTACTGGAGGGGAAAGATATTTCCAGCATGGTGGcacaagga
gaggaattgGTGAACTCACGAATGTTCACCGAGGCCAAGCTTGGCCGCGC
CCATGCATTCACAGGAAATTTTAAGGAGGCAGAGCGCCTCTATTCACAGG
CCTTGTCGTCGGACCCGTCTTTTGCGCCGGCTCACACCTCTCTTGGGAAG
CTGTACTTGTACCAGAAAGAAACGGCCCGAGCGTTGCAGGCGTTTGAAAA
AGCCTTAGAGCTCTCCCCAGGGGACGGAGACGCGCTCTTGGGCTTGGCAA
GGCTGGAAGCCCTCCAGGCTCACCAAGCAGGGGGCGAAGAGAGGCTGCAC
AAGGCGGCCGCATTGTACGCGGCGGCGGTGCGGACGTCTCCGGCGGACTC
CTACGAATCCGCCTGGTTCGACTACGGGGTGGTGCTGGGCCGCCTGGGGA
GacacgaggaggcggcagagaAGCTGGAGCGTGCCGTGGCCATGAATGAG
GAGCAGATGAACTTCAACATGCTGGGCCAGGTCGGTCCTGTGGGCGGGGC
CTCCCTCAGTGCGTGAATGCCTGGAGCTACAGTCCGGCTTGTTAAGCTTC
CTGCCCTCTTATtcgccattttcttccttctcgtcgcCTTCATCCATGTT
TATGCTTCCAACATCGAAGAAGACGTACTGGAGGGGAAAGATATTTCCAG
CATGGTGGcacaaggagaggaattgGTGAACTCACGAATGTTCACCGAGG
CCAAGCTTGGCCGCGCCCATGCATTCACAGGAAATTTTAAGGAGGCAGAG
CGCCTCTATTCACAGGCCTTGTCGTCGGACCCGTCTTTTGCGCCGGCTCA
CACCTCTCTTGGGAAGCTGTACTTGTACCAGAAAGAAACGGCCCGAGCGT
TGCAGGCGTTTGAAAAAGCCTTAGAGCTCTCCCCAGGGGACGGAGACGCG
CTCTTGGGCTTGGCAAGGCTGGAAGCCCTCCAGGCTCACCAAGCAGGGGG
CGAAGAGAGGCTGCACAAGGCGGCCGCATTGTACGCGGCGGCGGTGCGGA
CGTCTCCGGCGGACTCCTACGAATCCGCCTGGTTCGACTACGGGGTGGTG
CTGGGCCGCCTGGGGAGacacgaggaggcggcagagaAGCTGGAGCGTGC
CGTGGCCATGAATGAGGAGCAGATGAACTTCAACATGCTGGGCCAGGTCG
GTCCTGTGGGCGGGGCCTCCCTCAGTGCGTGA back to top
|