EWM22520.1, cds8153 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|585103035|gb|EWM22520.1| (tpr repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 444.121 bits (1141), Expect = 1.295e-157 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA 221
MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA
Sbjct: 1 MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA 221
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1082487560|gb|OFY32168.1| (hypothetical protein A2X01_15110 [Bacteroidetes bacterium GWF2_35_48] >gi|1082541810|gb|OFY76567.1| hypothetical protein A2275_15995 [Bacteroidetes bacterium RIFOXYA12_FULL_35_11]) HSP 1 Score: 73.559 bits (179), Expect = 1.389e-11 Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 58 MFTEA--KLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERA 195
M+ EA +G +F+ A+ Y +ALS +P F+ AHT LG LY+ K+T AL F KAL + DAL + LQ ++ A ++ + P D+ +W++ G++ LGR+ EA E L++A
Sbjct: 485 MYFEAFNNIGNLKMTMNDFQGAKIAYEKALSLNPDFSTAHTQLGMLYIKNKDTINALTCFNKALISDSLNTDALYNRGIILILQ-------KKFSDALKDFSLIIAVDPTDA--QSWYNSGLIKSNLGRNSEACEDLQQA 615
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|501590504|ref|WP_012594639.1| (hypothetical protein [Cyanothece sp. PCC 8801] >gi|218166628|gb|ACK65365.1| TPR repeat-containing protein [Cyanothece sp. PCC 8801]) HSP 1 Score: 72.7886 bits (177), Expect = 2.440e-11 Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 0
Query: 65 GRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
GR G + EAE ++ + + DP+ A A+ +LG YQ + A+ A++KA++L+P D DA L + Q +L +A A Y A++ +P +Y A+++ G+ L G+ EEA ++A+ +N
Sbjct: 36 GRTAGKMGKYTEAEAIFRRVIELDPNLADAYNNLGNALYYQGKLDEAIAAYQKAIQLNPNDADAYNNLGNALSDQG-------KLEEAIAAYQKAIQLNP--NYADAYYNLGIALSDQGKLEEAIAAYQKAIQLN 161
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|298713360|emb|CBJ33577.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.0182 bits (175), Expect = 5.383e-11 Identity = 62/216 (28.70%), Postives = 98/216 (45.37%), Query Frame = 0
Query: 15 LFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAK-------------------LGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQV 211
L A+ L + V S++ L G +VA L R F EA+ LGR A TG EAERLY AL + P APAH +L K++ +Q+ A A ++FE++LE + +A LGL R+ ++ E YA ++ P+++ FD GV+ + G+ A E RA +N +++ ++ Q+
Sbjct: 8 LTAMLTRLTTVLVVSLSHV---ALAGAQQGELVAAAAGLFERRKFDEAESVLRQALSESPSNPPALVLLGRVRATTGKLDEAERLYRVALEASPRNAPAHHALAKVFAFQQRWAEAKESFERSLEADADNAEAWLGLGRVSMATGNEEAAERH-------YARSLSLDPSNALLH--FDMGVLSCKRGQVIAADEAFARAGELN-PKLDLTVVAQM 210
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1151034970|gb|OOP56386.1| (hypothetical protein AYP45_09250 [Candidatus Brocadia caroliniensis]) HSP 1 Score: 68.5514 bits (166), Expect = 1.948e-10 Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0
Query: 72 GNFKEAERLYSQALSSDPSFAPAHTSLG----KLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
G ++EA +LY + L+S+P A A + G LY Y + A+ AF+KA+E++P D A LG + L ER +A L+ AV+ +P ++ AW + G+ L RLG HE+A ++A+ +N
Sbjct: 80 GKYEEALKLYDKVLASEPGLASAWYNKGVALIALYRYNE----AMFAFDKAMEINPKDDLAWLGKGYILILF-------ERFDEALKLFGKAVQANPKRAW--AWNNMGITLNRLGMHEDAIRAFDKAIEIN 198
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1088342063|gb|OHB90596.1| (hypothetical protein A3C38_07125 [Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_50_42] >gi|1088347130|gb|OHB94713.1| hypothetical protein A3I59_09480 [Planctomycetes bacterium RIFCSPLOWO2_02_FULL_50_16]) HSP 1 Score: 67.781 bits (164), Expect = 3.538e-10 Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
Query: 74 FKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSP-------GDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVA 197
+KEA Y +AL DP A G +Y+ K+ A AL +++AL ++P G AL GL R E A Y A+ SP D +SAW + GVVL +LGRHEEA E R+++
Sbjct: 114 YKEALECYDKALEFDPGNATIWYDQGNIYIQLKDYASALVCYDRALTINPMFAAAWNNKGAALTGLGRYE--------------DAIESYDKALDISPDD--KSAWQNKGVVLEKLGRHEEADECFRRSMS 228
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1088284448|gb|OHB38976.1| (hypothetical protein A2060_03225 [Planctomycetes bacterium GWA2_50_13] >gi|1088358442|gb|OHC04117.1| hypothetical protein A3G17_06385 [Planctomycetes bacterium RIFCSPLOWO2_12_FULL_50_35]) HSP 1 Score: 67.781 bits (164), Expect = 6.769e-10 Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
Query: 74 FKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSP-------GDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVA 197
+KEA Y +AL DP A G +Y+ K+ A AL +++AL ++P G AL GL R E A Y A+ SP D +SAW + GVVL +LGRHEEA E R+++
Sbjct: 172 YKEALECYDKALEFDPGNATIWYDQGNIYIQLKDYASALVCYDRALTINPMFAAAWNNKGAALTGLGRYE--------------DAIESYDKALDISPDD--KSAWQNKGVVLEKLGRHEEADECFRRSMS 286
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|499929598|ref|WP_011610332.1| (hypothetical protein [Trichodesmium erythraeum] >gi|110165397|gb|ABG49937.1| TPR repeat [Trichodesmium erythraeum IMS101]) HSP 1 Score: 67.781 bits (164), Expect = 1.607e-9 Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 0
Query: 64 LGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEE-QMNFNMLG 209
LG GN +A Y QAL +P++A A +LG + L Q + A++ F K+LEL+P A L + Q G L KA+ Y A+ +P +Y AW + GVVL + G+ E A E +++ +N + M N LG
Sbjct: 1169 LGLIFQEKGNLSKASNYYQQALEINPNYAEAWCNLGVILLKQGQIELAIEYFRKSLELNPDYAQAYNNLGFV-----FQEKGN--LSKASNYYQQALEINP--NYAEAWCNLGVVLRKQGQIELAIEYFRKSLELNPDYAMTHNSLG 1306
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|501375877|ref|WP_012407443.1| (hypothetical protein [Nostoc punctiforme] >gi|186463617|gb|ACC79418.1| TPR repeat-containing protein [Nostoc punctiforme PCC 73102]) HSP 1 Score: 67.3958 bits (163), Expect = 1.728e-9 Identity = 47/138 (34.06%), Postives = 69/138 (50.00%), Query Frame = 0
Query: 62 AKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
LG+A G EA Y +AL DP++A AH +LG +Q + + A+ A+++AL L P D D L + H G +L +A A Y A+ P D+ A + G+ L G+ EEA +LE AV +N
Sbjct: 374 CNLGKALHTQGKLSEAMAAYQRALRVDPNYASAHCNLGVTLYHQGKLSEAIAAYQRALRLDPNDADTHCNL----GIALHDQG---KLSEAIAAYQRALLIDPNDA--DAHCNLGIALKGQGKLEEAIAELEIAVRLN 502 HSP 2 Score: 63.5438 bits (153), Expect = 3.562e-8 Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0
Query: 62 AKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
LG+A G EA Y +AL DP++A AH +LG +Q + + A+ A++KAL++ P +A L + AL H G +L +A A Y A+R P +Y SA + GV L G+ EA +RA+ ++
Sbjct: 306 CNLGKALHTQGKLSEAMAAYQRALRVDPNYASAHCNLGVTLYHQGKLSEAIAAYQKALQIDPNYVNAHCNLGK--AL--HTQG---KLSEAMAAYQRALRVDP--NYASAHCNLGVTLYHQGKLSEAIAAYQRALRLD 434
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1197736245|ref|WP_086686658.1| (hypothetical protein [Nostoc sp. T09]) HSP 1 Score: 67.3958 bits (163), Expect = 1.996e-9 Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = 0
Query: 37 VLEGKDISSMV----AQGEELVNSRMFTEA--KLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQ 202
V++ K I+S + A +L +++ E + G A G + EAE ++ + L DP+ A+ +LG QK+ +A+ A+EKA++L+P + DA +G+A +AL +++L +A A Y A++ +P ++ + GVVL + E+A E+A+ +N E+
Sbjct: 5 VIDPKIIASFLSVSLATTPQLASTKTTVEQLFQQGNAVQEAGKYSEAEAIWHRVLRIDPNNFVAYYNLGCALYKQKKLEQAIAAYEKAIQLNPKNADAYVGMA--DAL-----FSQKKLEQAIAAYKKAIQLNPKNA--DVYLALGVVLYEQNKPEQAIAAYEKAIQINPEK 167 The following BLAST results are available for this feature:
BLAST of EWM22520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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