EWM22520.1, cds8153 (CDS) Nannochloropsis gaditana

Overview
NameEWM22520.1
Unique Namecds8153
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:25066..25254 +
Alignment locationKK037248.1:25474..25950 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22520.1
Producttpr repeat-containing protein
Orig transcript idgnl|cribi|Naga_100769g2.4210.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:25066..25254 +
KK037248.1supercontigKK037248.1:25474..25950 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|585103035|gb|EWM22520.1| (tpr repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 444.121 bits (1141), Expect = 1.295e-157
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA 221
            MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA
Sbjct:    1 MPGATVRLVKLPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQVGPVGGASLSA 221          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1082487560|gb|OFY32168.1| (hypothetical protein A2X01_15110 [Bacteroidetes bacterium GWF2_35_48] >gi|1082541810|gb|OFY76567.1| hypothetical protein A2275_15995 [Bacteroidetes bacterium RIFOXYA12_FULL_35_11])

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-11
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 0
Query:   58 MFTEA--KLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERA 195
            M+ EA   +G       +F+ A+  Y +ALS +P F+ AHT LG LY+  K+T  AL  F KAL     + DAL     +  LQ       ++   A   ++  +   P D+   +W++ G++   LGR+ EA E L++A
Sbjct:  485 MYFEAFNNIGNLKMTMNDFQGAKIAYEKALSLNPDFSTAHTQLGMLYIKNKDTINALTCFNKALISDSLNTDALYNRGIILILQ-------KKFSDALKDFSLIIAVDPTDA--QSWYNSGLIKSNLGRNSEACEDLQQA 615          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|501590504|ref|WP_012594639.1| (hypothetical protein [Cyanothece sp. PCC 8801] >gi|218166628|gb|ACK65365.1| TPR repeat-containing protein [Cyanothece sp. PCC 8801])

HSP 1 Score: 72.7886 bits (177), Expect = 2.440e-11
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   65 GRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
            GR     G + EAE ++ + +  DP+ A A+ +LG    YQ +   A+ A++KA++L+P D DA   L    + Q        +L +A A Y  A++ +P  +Y  A+++ G+ L   G+ EEA    ++A+ +N
Sbjct:   36 GRTAGKMGKYTEAEAIFRRVIELDPNLADAYNNLGNALYYQGKLDEAIAAYQKAIQLNPNDADAYNNLGNALSDQG-------KLEEAIAAYQKAIQLNP--NYADAYYNLGIALSDQGKLEEAIAAYQKAIQLN 161          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|298713360|emb|CBJ33577.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0182 bits (175), Expect = 5.383e-11
Identity = 62/216 (28.70%), Postives = 98/216 (45.37%), Query Frame = 0
Query:   15 LFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAK-------------------LGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQV 211
            L A+   L   + V  S++    L G     +VA    L   R F EA+                   LGR  A TG   EAERLY  AL + P  APAH +L K++ +Q+  A A ++FE++LE    + +A LGL R+     ++   E         YA ++   P+++     FD GV+  + G+   A E   RA  +N  +++  ++ Q+
Sbjct:    8 LTAMLTRLTTVLVVSLSHV---ALAGAQQGELVAAAAGLFERRKFDEAESVLRQALSESPSNPPALVLLGRVRATTGKLDEAERLYRVALEASPRNAPAHHALAKVFAFQQRWAEAKESFERSLEADADNAEAWLGLGRVSMATGNEEAAERH-------YARSLSLDPSNALLH--FDMGVLSCKRGQVIAADEAFARAGELN-PKLDLTVVAQM 210          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1151034970|gb|OOP56386.1| (hypothetical protein AYP45_09250 [Candidatus Brocadia caroliniensis])

HSP 1 Score: 68.5514 bits (166), Expect = 1.948e-10
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0
Query:   72 GNFKEAERLYSQALSSDPSFAPAHTSLG----KLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
            G ++EA +LY + L+S+P  A A  + G     LY Y +    A+ AF+KA+E++P D  A LG   +  L        ER  +A  L+  AV+ +P  ++  AW + G+ L RLG HE+A    ++A+ +N
Sbjct:   80 GKYEEALKLYDKVLASEPGLASAWYNKGVALIALYRYNE----AMFAFDKAMEINPKDDLAWLGKGYILILF-------ERFDEALKLFGKAVQANPKRAW--AWNNMGITLNRLGMHEDAIRAFDKAIEIN 198          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1088342063|gb|OHB90596.1| (hypothetical protein A3C38_07125 [Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_50_42] >gi|1088347130|gb|OHB94713.1| hypothetical protein A3I59_09480 [Planctomycetes bacterium RIFCSPLOWO2_02_FULL_50_16])

HSP 1 Score: 67.781 bits (164), Expect = 3.538e-10
Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
Query:   74 FKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSP-------GDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVA 197
            +KEA   Y +AL  DP  A      G +Y+  K+ A AL  +++AL ++P         G AL GL R E               A   Y  A+  SP D  +SAW + GVVL +LGRHEEA E   R+++
Sbjct:  114 YKEALECYDKALEFDPGNATIWYDQGNIYIQLKDYASALVCYDRALTINPMFAAAWNNKGAALTGLGRYE--------------DAIESYDKALDISPDD--KSAWQNKGVVLEKLGRHEEADECFRRSMS 228          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1088284448|gb|OHB38976.1| (hypothetical protein A2060_03225 [Planctomycetes bacterium GWA2_50_13] >gi|1088358442|gb|OHC04117.1| hypothetical protein A3G17_06385 [Planctomycetes bacterium RIFCSPLOWO2_12_FULL_50_35])

HSP 1 Score: 67.781 bits (164), Expect = 6.769e-10
Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
Query:   74 FKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSP-------GDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVA 197
            +KEA   Y +AL  DP  A      G +Y+  K+ A AL  +++AL ++P         G AL GL R E               A   Y  A+  SP D  +SAW + GVVL +LGRHEEA E   R+++
Sbjct:  172 YKEALECYDKALEFDPGNATIWYDQGNIYIQLKDYASALVCYDRALTINPMFAAAWNNKGAALTGLGRYE--------------DAIESYDKALDISPDD--KSAWQNKGVVLEKLGRHEEADECFRRSMS 286          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|499929598|ref|WP_011610332.1| (hypothetical protein [Trichodesmium erythraeum] >gi|110165397|gb|ABG49937.1| TPR repeat [Trichodesmium erythraeum IMS101])

HSP 1 Score: 67.781 bits (164), Expect = 1.607e-9
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 0
Query:   64 LGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEE-QMNFNMLG 209
            LG      GN  +A   Y QAL  +P++A A  +LG + L Q +   A++ F K+LEL+P    A   L  +      Q  G   L KA+  Y  A+  +P  +Y  AW + GVVL + G+ E A E   +++ +N +  M  N LG
Sbjct: 1169 LGLIFQEKGNLSKASNYYQQALEINPNYAEAWCNLGVILLKQGQIELAIEYFRKSLELNPDYAQAYNNLGFV-----FQEKGN--LSKASNYYQQALEINP--NYAEAWCNLGVVLRKQGQIELAIEYFRKSLELNPDYAMTHNSLG 1306          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|501375877|ref|WP_012407443.1| (hypothetical protein [Nostoc punctiforme] >gi|186463617|gb|ACC79418.1| TPR repeat-containing protein [Nostoc punctiforme PCC 73102])

HSP 1 Score: 67.3958 bits (163), Expect = 1.728e-9
Identity = 47/138 (34.06%), Postives = 69/138 (50.00%), Query Frame = 0
Query:   62 AKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
              LG+A    G   EA   Y +AL  DP++A AH +LG    +Q + + A+ A+++AL L P D D    L     +  H  G   +L +A A Y  A+   P D+   A  + G+ L   G+ EEA  +LE AV +N
Sbjct:  374 CNLGKALHTQGKLSEAMAAYQRALRVDPNYASAHCNLGVTLYHQGKLSEAIAAYQRALRLDPNDADTHCNL----GIALHDQG---KLSEAIAAYQRALLIDPNDA--DAHCNLGIALKGQGKLEEAIAELEIAVRLN 502          

HSP 2 Score: 63.5438 bits (153), Expect = 3.562e-8
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0
Query:   62 AKLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMN 199
              LG+A    G   EA   Y +AL  DP++A AH +LG    +Q + + A+ A++KAL++ P   +A   L +  AL  H  G   +L +A A Y  A+R  P  +Y SA  + GV L   G+  EA    +RA+ ++
Sbjct:  306 CNLGKALHTQGKLSEAMAAYQRALRVDPNYASAHCNLGVTLYHQGKLSEAIAAYQKALQIDPNYVNAHCNLGK--AL--HTQG---KLSEAMAAYQRALRVDP--NYASAHCNLGVTLYHQGKLSEAIAAYQRALRLD 434          
BLAST of EWM22520.1 vs. NCBI_GenBank
Match: gi|1197736245|ref|WP_086686658.1| (hypothetical protein [Nostoc sp. T09])

HSP 1 Score: 67.3958 bits (163), Expect = 1.996e-9
Identity = 50/172 (29.07%), Postives = 93/172 (54.07%), Query Frame = 0
Query:   37 VLEGKDISSMV----AQGEELVNSRMFTEA--KLGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQAGGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQ 202
            V++ K I+S +    A   +L +++   E   + G A    G + EAE ++ + L  DP+   A+ +LG     QK+  +A+ A+EKA++L+P + DA +G+A  +AL       +++L +A A Y  A++ +P ++    +   GVVL    + E+A    E+A+ +N E+
Sbjct:    5 VIDPKIIASFLSVSLATTPQLASTKTTVEQLFQQGNAVQEAGKYSEAEAIWHRVLRIDPNNFVAYYNLGCALYKQKKLEQAIAAYEKAIQLNPKNADAYVGMA--DAL-----FSQKKLEQAIAAYKKAIQLNPKNA--DVYLALGVVLYEQNKPEQAIAAYEKAIQINPEK 167          
The following BLAST results are available for this feature:
BLAST of EWM22520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103035|gb|EWM22520.1|1.295e-157100.00tpr repeat-containing protein [Nannochloropsis gad... [more]
gi|1082487560|gb|OFY32168.1|1.389e-1132.14hypothetical protein A2X01_15110 [Bacteroidetes ba... [more]
gi|501590504|ref|WP_012594639.1|2.440e-1130.37hypothetical protein [Cyanothece sp. PCC 8801] >gi... [more]
gi|298713360|emb|CBJ33577.1|5.383e-1128.70conserved unknown protein [Ectocarpus siliculosus][more]
gi|1151034970|gb|OOP56386.1|1.948e-1034.09hypothetical protein AYP45_09250 [Candidatus Broca... [more]
gi|1088342063|gb|OHB90596.1|3.538e-1035.88hypothetical protein A3C38_07125 [Planctomycetes b... [more]
gi|1088284448|gb|OHB38976.1|6.769e-1035.88hypothetical protein A2060_03225 [Planctomycetes b... [more]
gi|499929598|ref|WP_011610332.1|1.607e-933.33hypothetical protein [Trichodesmium erythraeum] >g... [more]
gi|501375877|ref|WP_012407443.1|1.728e-934.06hypothetical protein [Nostoc punctiforme] >gi|1864... [more]
gi|1197736245|ref|WP_086686658.1|1.996e-929.07hypothetical protein [Nostoc sp. T09][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8177rna8177Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications