rna8170, rna8170 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8170
Unique Name	rna8170
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	327
Alignment location	KK037247.1:743987..745339 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101481g2.7142.mrna
Orig protein id	gnl\|cribi\|Naga_101481g2.7142
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:743987..745339 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101481g2	gene7914	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22527.1	cds8146	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8170	rna8170-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:743987..745339-
coding sequence from alignment at KK037247.1:743987..745339-

mRNA sequence

>rna8170 ID=rna8170|Name=rna8170|organism=Nannochloropsis gaditana|type=mRNA|length=327bp
ATGACAACGGGCGCCGGGTACACGTTCGGGCAAGATATCACCGAACAGTT
CAACCACGTGAACGGTCTCTCTTTTGTGGCGAGAGCGCATCAGCTGATCA
TGGAAGGGTACCAGTGGACGCACAAACAAGGAGTGGTGACCATCTTCTCC
GCGCCTAACTACTACTACCGGTGCGGGAACCAAGCAGCCCTGATGGAAGT
GGACGAGCAGTTTGGCAGCACGGAGGGACAGGATGTGTACCAATACTGTA
ATTTCATCCGCTTCGACCCCGCCCCGCGGGAAGACGCAGGGCAGCAGGGA
AAGCGCCAACCGGACTATTTCTTGTAG

protein sequence of rna8170

>rna8170-protein ID=rna8170-protein|Name=rna8170|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
YTEGHSGAEWWVQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSS
LGGPTLVLPLSGPLHVGEDLSGALSGAWLSLPAVGKHTVFDGRLLHAAPA
ELRGLWADGDGLEGGGRAERKGGRKRVTLLVNVWLNHIPNGSERPSPSLL
QALSPCDSAAPLECRIPLAPPFQRGDAEEGTISSSLASPGASQVTEVTLR
GGAVGEGAAQRASWRLGGEAKQRYKVSILVPAEEGRKFSREDEGSTVRLM
FKEGVTGMVVREVGRKGKRKRVVNEGEEEEEEEEEDDDDDDDDDEDEDEE
EDGDDGEEDDGEEEEEEEEDGIEGEKMMEKRKKRRRRRRGTRRRRRRRRR
KWRRRRRRRIKRNKKRWRWSL

mRNA from alignment at KK037247.1:743987..745339-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8170 ID=rna8170|Name=rna8170|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp|location=Sequence derived from alignment at KK037247.1:743987..745339- (Nannochloropsis gaditana)
TACACCGAAGGACACAGCGGGGCGGAATGGTGGGTGCAGGTGCTGGAGGA
GGAGGACGACATTGGCCTGCATTTCGACAAGGACTATGCCCTGGAAGCAC
ACGGTCTCAACATCTACCCTCACCTGGCCACGGTCACCTACCTCTCTTCC
TTGGGAGGTCCCACTCTGGTCCTTCCCCTCTCGGGCCCCCTGCACGTGGG
GGAAGACCTGTCCGGCGCGCTCTCCGGAGCCTGGCTCTCCCTGCCCGCCG
TGGGCAAACACACCGTCTTCGATGGACGCCTGCTACACGCGGCGCCCGCG
GAATTGCGGGGACTGTGGGCCGACGGAGACGGTTTGGAGGGAGGTGGGAG
GGCGGAAAGGAAAGGTGGACGGAAGCGGGTGACCCTCCTGGTGAACGTCT
GGCTGAATCACATTCCCAACGGCTCGGAACGGCCGTCGCCCTCCCTCCTC
CAGGCCCTCTCTCCCTGCGACTCTGCCGCCCCATTGGAATGTAGAATCCC
CTTGGCCCCTCCCTTTCAGCGAGGGGATGCCGAGGAAGGGACTATCTCGT
CCTCCCTTGCGTCCCCCGGCGCCTCTCAGGTGACGGAGGTGACGCTAAGA
GGAGGGGCGGTAGGGGAAGGAGCGGCCCAACGGGCATCGTGGAGGTTGGG
AGGTGAAGCCAAGCAGAGGTATAAGGTTTCAATCCTTGTGCCCGCTGAGG
AGGGGAGGAAGTTCTCGAGGGAGGACGAAGGCTCCACTGTGAGGCTGATG
TTTAAGGAGGGGGTGACGGGGATGGTGGTACGGGAGGTGGGAAGGAAGGG
AAAGAGGAAGCGGGTGGTGAATGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGATGATGATGATGATGATGATGATGATGAGGATGAGGATGAGGAG
GAGGATGGTGATGACGGGGAGGAGGATGATGGAGAAGAGGAAGAAGAGGA
GGAGGAGGATGGTATTGAGGGGGAGAAGATGATGGAGAAGAGGAAGAAGA
GGAGGAGGAGGAGGAGGGGGACAAGAAGAAGGAGGAGGAGGAGGAGGAGG
AAGTGGAGGAGGAGGAGGAGGAGGAGGATTAAAAGGAATAAAAAAAGATG
GAGATGGTCATTATGATTCCGGAAGAGAAAGGCAGGTTAAAGGCCTTATG
TTCCCCTTCTTCCGCTCTTGCTTTCGAGAGAAGGTAATGTCTAGGAGGAG
GCAGTCGGAAAGGGACCAAGGGGAGCGACAAGAAGGACAGAGCCGAAGAC
GGTTTTTGAGACGAGCTTAGAAATGGATCATGACGACGAGGACGGTCATC
CGAGTACAGTAAGATGTAAAACAAAGAACGAGGTGCCAGAGCTGGAGCTT
GCC

Coding sequence (CDS) from alignment at KK037247.1:743987..745339-

>rna8170 ID=rna8170|Name=rna8170|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at KK037247.1:743987..745339- (Nannochloropsis gaditana)
TACACCGAAGGACACAGCGGGGCGGAATGGTGGGTGCAGGTGCTGGAGGA
GGAGGACGACATTGGCCTGCATTTCGACAAGGACTATGCCCTGGAAGCAC
ACGGTCTCAACATCTACCCTCACCTGGCCACGGTCACCTACCTCTCTTCC
TTGGGAGGTCCCACTCTGGTCCTTCCCCTCTCGGGCCCCCTGCACGTGGG
GGAAGACCTGTCCGGCGCGCTCTCCGGAGCCTGGCTCTCCCTGCCCGCCG
TGGGCAAACACACCGTCTTCGATGGACGCCTGCTACACGCGGCGCCCGCG
GAATTGCGGGGACTGTGGGCCGACGGAGACGGTTTGGAGGGAGGTGGGAG
GGCGGAAAGGAAAGGTGGACGGAAGCGGGTGACCCTCCTGGTGAACGTCT
GGCTGAATCACATTCCCAACGGCTCGGAACGGCCGTCGCCCTCCCTCCTC
CAGGCCCTCTCTCCCTGCGACTCTGCCGCCCCATTGGAATGTAGAATCCC
CTTGGCCCCTCCCTTTCAGCGAGGGGATGCCGAGGAAGGGACTATCTCGT
CCTCCCTTGCGTCCCCCGGCGCCTCTCAGGTGACGGAGGTGACGCTAAGA
GGAGGGGCGGTAGGGGAAGGAGCGGCCCAACGGGCATCGTGGAGGTTGGG
AGGTGAAGCCAAGCAGAGGTATAAGGTTTCAATCCTTGTGCCCGCTGAGG
AGGGGAGGAAGTTCTCGAGGGAGGACGAAGGCTCCACTGTGAGGCTGATG
TTTAAGGAGGGGGTGACGGGGATGGTGGTACGGGAGGTGGGAAGGAAGGG
AAAGAGGAAGCGGGTGGTGAATGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGATGATGATGATGATGATGATGATGATGAGGATGAGGATGAGGAG
GAGGATGGTGATGACGGGGAGGAGGATGATGGAGAAGAGGAAGAAGAGGA
GGAGGAGGATGGTATTGAGGGGGAGAAGATGATGGAGAAGAGGAAGAAGA
GGAGGAGGAGGAGGAGGGGGACAAGAAGAAGGAGGAGGAGGAGGAGGAGG
AAGTGGAGGAGGAGGAGGAGGAGGAGGATTAAAAGGAATAAAAAAAGATG
GAGATGGTCATTATGA

Synonyms

Publications