rna817, rna817 (mRNA) Nannochloropsis gaditana

Overview
Namerna817
Unique Namerna817
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length982
Alignment locationCM002456.1:491210..492644 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g8.309.mrna
Orig protein idgnl|cribi|Naga_100017g8.309
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:491210..492644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g8gene783Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna817rna817-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29811.1cds817Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna817 ID=rna817|Name=rna817|organism=Nannochloropsis gaditana|type=mRNA|length=982bp
GTGAGCGAGCGAGGAGTCTGTCACAAGACCCAGAGCGGTGAGTTGAGCTT
ATTCCAAAGCAGTGCTAAATCACTGTCTCATACTGGTACCATTCTTGCAC
CAGGCCGTACGTTCGGGGGCATTGTGTACCTGTAGCTGAAAGAAAGCGGA
GGATAAGAGTAGGCAACAGCCCTGCGGAGGATACTCCATACGTACTGTAT
TGTACACTGTGCCCTGGCACTTAACGAGGACCGCTTCACAAGTATCGTAA
GGTACCAAAATATCTATAGACGACCATAATTTGATGGCGCAAGGCCTCGC
GAAGCTGAGCAAGAAGGGTTTTTCTCAGAAAAGTAAAAAAGCTCATGCCA
AAGCTAGCAGCAAACGGACGGCAGCAAAGAAAGGAAACCCCACCCAGTTA
CCAAAAAATATTCAGCGGCGGGGCATGGCCCTGGAGCAAGCTCGGATCAC
AAAGGCAATAAATCAAAATGTTGAAAGAGTGTCTTCGGCTCGAGCACTCA
AAGCAGGGGATACATTTTCTATGCAGGATGTTAAAAGAATTGGCAAGGAA
ATGAATCGAGATATGCGGCGGGAGGAGTTGTCACGGAAGAAGAGTCGTGT
TGAGGAAAAGCTGGCCGAGCTACAGGCGAAAGTAGAGGAGGCGTCTTAAG
GTCCACTCTGCAAGAGAAGATGGAAAATATGTAGAAAAACAATACTTACT
TATGAAAACGTACAGAAAGTCGTCTCACCAATGAGAAATGTCTTCTTGTG
GATAAATATAAGCTAAAAATGCCATATTTTTGTTGATGGCCACCTTTCAA
ATGTACACTCCAATTTTTCCTTCCCAGCGACACAAAAGGGGATGGAATGG
TCGCCTCCCAATCCTTATCAACAATTCGACGTTTGACTAAATGTTTCTGA
AAAGGAAGTACGCGTGCTCTCAAGTTAAAGCCCAAATCGAATGGAAAAAA
AGTAAGTTCTGCGGCAGCCGTCGACTACAAAC
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protein sequence of rna817

>rna817-protein ID=rna817-protein|Name=rna817|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MLNRLITHKRSTNGPSKGAIATDLSVLFRFDPPPKNESLREQFPLVQCIC
TCIQKQIDLQSHIIEQSMAKSDSKTPVIVASLVFVSVAVAAVVFVKTGGL
ESNAAKKVKTFFSKIPGVGKLAGARADAP
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mRNA from alignment at CM002456.1:491210..492644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna817 ID=rna817|Name=rna817|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at CM002456.1:491210..492644+ (Nannochloropsis gaditana)
CCACGGTCACCACATGATTTAATGGCCCTTTATCCTTAGCAGGCCAAGGA
CAGGCCGGCCTTTGGGTTAATGATTCCCTGTTAGTATGCTAAATCGACTG
ATTACTCATAAAAGGTCTACAAACGGCCCGTCTAAGGGGGCAATAGCTAC
CGACTTGAGCGTTTTGTTCCGCttcgaccccccccccaaaaacgAGTCCC
TGCGGGAACAGTTTCCTCTTGTTCAATGCATTTGCACATGCATACAAAAA
CAAATTGACTTACAATCACACATCATAGAACAGAGCATGGCGAAAAGTGA
TAGCAAAACACCCGTCATTGTGGCATCTTTGGTTTTTGTAAGTGTCGCCG
TTGCCGCCGTCGTGTTTGTGAAGACGGGCGGGCTGGAGAGCAACGGTACG
TTCTAAAGGAGGCTATTCATCAAATTGGGCCTTCAAATACCCCAACTCTT
CACATGTCCGGCATTTATGTATTATGGTTGGACTTTATGTGGTCCGGGCA
ATTTGAGACTCATGTGTGGGTAGGCCGTCTGCCCCTGTCAGCCGGGCTTT
CCCCATTTGTGCCCCATTGGTGTGGTGACGGCAATGGCAAGTTATTTCAT
ATATGGGGTTGGCTTATTTTTATCCCGTGGTAAACTCGTACTTTATCCTT
TTTTCTTACATAAATCCTATTTCCTATCGTCGTGGCATGTCACTCGGCAG
CCGCCAAAAAGGTGAAAACGTTCTTCAGTAAAATCCCTGGTGTAGGCAAG
TTGGCGGGCGCGCGTGCCGATGCACCATGAAGACTTCAAGAAACAAGAAA
CAAGAATTCGAATGCGTTAGCATGTAAATGAGGTGACGCTGACACAAAGG
GAGAATATAAGCGCGGCAatgcagaggaagaaggtgtcCTTGTAATGGTC
AATGATACGTACGTTGTGTATTCAAAATTGTCAGGAAACTTGGTGACTAG
ACTCATGTCTATCGTAAAACCTGGGCCTGGCAGCCCAAAGCCCTTTCAAT
AATTTTGATGGCCAGTATACAGATATTATACGCGAATATGGAGGGGACAG
GAAGCGATGTGAGTACGTTGAAAATGCTGAATTTGTTTGCTCATACCGCA
AGTAATAAGTATAAGTGATTCTATCCAGCTTCGAAGCGAAGGCGGAGCGT
TTTTGTTGCGTGTGATGCAAGTGTGTGGACCTTGGCGCATCGTTGATGTG
CGAACACGCAATCAAGACGGAAGCGTCATGTAGCAACGCATGTGAAAGAT
TTAAATAAAATACAGATTTAAATAAAATAACAACAAGGCTTGACCATGTA
GCAACCTTTCTAAAATCGCTGTATTTTTGGAGAATCGTGTCTCCATGTGT
CGAAACCATTTTGAAAGGAAAAGTATCCTCTGGGGCTCATCAGGTTGCCC
TATCTCCGCAACGCTTCATGCGCGTCGCCCCACAG
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Coding sequence (CDS) from alignment at CM002456.1:491210..492644+

>rna817 ID=rna817|Name=rna817|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002456.1:491210..492644+ (Nannochloropsis gaditana)
ATGCTAAATCGACTGATTACTCATAAAAGGTCTACAAACGGCCCGTCTAA
GGGGGCAATAGCTACCGACTTGAGCGTTTTGTTCCGCttcgacccccccc
ccaaaaacgAGTCCCTGCGGGAACAGTTTCCTCTTGTTCAATGCATTTGC
ACATGCATACAAAAACAAATTGACTTACAATCACACATCATAGAACAGAG
CATGGCGAAAAGTGATAGCAAAACACCCGTCATTGTGGCATCTTTGGTTT
TTGTAAGTGTCGCCGTTGCCGCCGTCGTGTTTGTGAAGACGGGCGGGCTG
GAGAGCAACGCCGCCAAAAAGGTGAAAACGTTCTTCAGTAAAATCCCTGG
TGTAGGCAAGTTGGCGGGCGCGCGTGCCGATGCACCATGAATGCTAAATC
GACTGATTACTCATAAAAGGTCTACAAACGGCCCGTCTAAGGGGGCAATA
GCTACCGACTTGAGCGTTTTGTTCCGCttcgaccccccccccaaaaacgA
GTCCCTGCGGGAACAGTTTCCTCTTGTTCAATGCATTTGCACATGCATAC
AAAAACAAATTGACTTACAATCACACATCATAGAACAGAGCATGGCGAAA
AGTGATAGCAAAACACCCGTCATTGTGGCATCTTTGGTTTTTGTAAGTGT
CGCCGTTGCCGCCGTCGTGTTTGTGAAGACGGGCGGGCTGGAGAGCAACG
CCGCCAAAAAGGTGAAAACGTTCTTCAGTAAAATCCCTGGTGTAGGCAAG
TTGGCGGGCGCGCGTGCCGATGCACCATGA
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Synonyms
Publications