rna8169, rna8169 (mRNA) Nannochloropsis gaditana

Overview
Namerna8169
Unique Namerna8169
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length592
Alignment locationKK037247.1:743143..743831 +

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase 2a catalytic subunit
Orig transcript idgnl|cribi|Naga_101481g1.7143.mrna
Orig protein idgnl|cribi|Naga_101481g1.7143
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:743143..743831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101481g1gene7913Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8169rna8169-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22528.1cds8145Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8169 ID=rna8169|Name=rna8169|organism=Nannochloropsis gaditana|type=mRNA|length=592bp
TCCGAGAACAACACGGTCTCATTGATAATCAATCCAACAGGCTGTTATGT
ATCATTGACGTCAACTTTGTTTTCCTCAGAAGTGGGTAGGTTTGTTGGGA
CGGTAATTTTATCGCCACGACTCGACACACTTTTGCACGGGATCATCCCC
CTTTCAGCCTCCTTCCTGCGCTTGGTCCATGGCCCCTCCTTCTGTTTACG
ACCCTGGTCTTCTAGAAGCACACATTGAATCCTTGCGCAAAGGACAAATT
CTACCTGAGAACGTAGTGTGGAGTTTGTGCGAAAAGGCAAAGGAGATTCT
TCAAGAGGAGAGCAATGTGCAAGCAGTGCAGTGTCCCGTCACGATATGTG
GAGACATCCACGGACAGTTTTACGACCTTCTGGAGCTTTTCCTCATCGGT
GGAGACTGTCCAGACACCAACTACTTATTCATGGGCGATTACGTTGACCG
AGGCTTTTATTCGGTGGAAGTGGCTTCGCTCCTGATTGCGCTCAAGGTCC
GTCATCGACATAGGATCACGATCCTGCGGGGGAATCACGAGTCTCGGCAA
ATCACGCAGGTGTATGGCTTTTACGACGAATGTCAGCGGAAA
back to top

protein sequence of rna8169

>rna8169-protein ID=rna8169-protein|Name=rna8169|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MTTGAGYTFGQDITEQFNHVNGLSFVARAHQLIMEGYQWTHKQGVVTIFS
APNYYYRCGNQAALMEVDEQFGSTEGQDVYQYCNFIRFDPAPREDAGQQG
KRQPDYFL
back to top

mRNA from alignment at KK037247.1:743143..743831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8169 ID=rna8169|Name=rna8169|organism=Nannochloropsis gaditana|type=mRNA|length=689bp|location=Sequence derived from alignment at KK037247.1:743143..743831+ (Nannochloropsis gaditana)
ATGACAACGTTCTCAACTATTattcattccctccctccctccctttctcc
ctccctccctctctgcatTTATTACCTCTATTCACAGGGGCGCCGGGTAC
ACGTTCGGGCAAGATATCACCGAACAGTTCAACCACGTGAACGGTCTCTC
TTTTGTGGCGAGAGCGCATcaggtaagggagggagggagggaggggggca
gggaggggggaaggcaacaTGAGCTTTGGCATCCTCGTCCGGGCTCTCCA
CCTCGTCTCAAggaaccccctccctccctccctccctccctccctcccat
gcctcCACCCTGCAGCTGATCATGGAAGGGTACCAGTGGACGCACAAACA
AGGAGTGGTGACCATCTTCTCCGCGCCTAACTACTACTACCGGTGCGGGA
ACCaagcaggtggggagggagggggggaaggagggagggagggcagggga
gggcgaggcatGCGTCTATCTGAGGTGCTCAcccgtgcccctccctctcc
cccccctgctccgtcctgcctcctctgTGTCCTTCCGTGTGGCTCGCAGC
CCTGATGGAAGTGGACGAGCAGTTTGGCAGCACGGAGGGACAGGATGTGT
ACCAATACTGTAATTTCATCCGCTTCGACCCCGCCCCGCGGGAAGACGCA
GGGCAGCAGGGAAAGCGCCAACCGGACTATTTCTTgtag
back to top

Coding sequence (CDS) from alignment at KK037247.1:743143..743831+

>rna8169 ID=rna8169|Name=rna8169|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037247.1:743143..743831+ (Nannochloropsis gaditana)
ATGACAACGGGCGCCGGGTACACGTTCGGGCAAGATATCACCGAACAGTT
CAACCACGTGAACGGTCTCTCTTTTGTGGCGAGAGCGCATcagCTGATCA
TGGAAGGGTACCAGTGGACGCACAAACAAGGAGTGGTGACCATCTTCTCC
GCGCCTAACTACTACTACCGGTGCGGGAACCaagcagCCCTGATGGAAGT
GGACGAGCAGTTTGGCAGCACGGAGGGACAGGATGTGTACCAATACTGTA
ATTTCATCCGCTTCGACCCCGCCCCGCGGGAAGACGCAGGGCAGCAGGGA
AAGCGCCAACCGGACTATTTCTTgtagATGACAACGGGCGCCGGGTACAC
GTTCGGGCAAGATATCACCGAACAGTTCAACCACGTGAACGGTCTCTCTT
TTGTGGCGAGAGCGCATcagCTGATCATGGAAGGGTACCAGTGGACGCAC
AAACAAGGAGTGGTGACCATCTTCTCCGCGCCTAACTACTACTACCGGTG
CGGGAACCaagcagCCCTGATGGAAGTGGACGAGCAGTTTGGCAGCACGG
AGGGACAGGATGTGTACCAATACTGTAATTTCATCCGCTTCGACCCCGCC
CCGCGGGAAGACGCAGGGCAGCAGGGAAAGCGCCAACCGGACTATTTCTT
gtagATGACAACGGGCGCCGGGTACACGTTCGGGCAAGATATCACCGAAC
AGTTCAACCACGTGAACGGTCTCTCTTTTGTGGCGAGAGCGCATcagCTG
ATCATGGAAGGGTACCAGTGGACGCACAAACAAGGAGTGGTGACCATCTT
CTCCGCGCCTAACTACTACTACCGGTGCGGGAACCaagcagCCCTGATGG
AAGTGGACGAGCAGTTTGGCAGCACGGAGGGACAGGATGTGTACCAATAC
TGTAATTTCATCCGCTTCGACCCCGCCCCGCGGGAAGACGCAGGGCAGCA
GGGAAAGCGCCAACCGGACTATTTCTTgtagATGACAACGGGCGCCGGGT
ACACGTTCGGGCAAGATATCACCGAACAGTTCAACCACGTGAACGGTCTC
TCTTTTGTGGCGAGAGCGCATcagCTGATCATGGAAGGGTACCAGTGGAC
GCACAAACAAGGAGTGGTGACCATCTTCTCCGCGCCTAACTACTACTACC
GGTGCGGGAACCaagcagCCCTGATGGAAGTGGACGAGCAGTTTGGCAGC
ACGGAGGGACAGGATGTGTACCAATACTGTAATTTCATCCGCTTCGACCC
CGCCCCGCGGGAAGACGCAGGGCAGCAGGGAAAGCGCCAACCGGACTATT
TCTTgtag
back to top
Synonyms
Publications