|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100290g2.9871.mrna |
| Orig protein id | gnl|cribi|Naga_100290g2.9871 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:726650..728586 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8163 ID=rna8163|Name=rna8163|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp
CCCTCCCTCCAGGGCGCCGTCGTCGTCAAAAGTGCCATGGTCACGGCCAA
CAAGGCGACCACGGACGTGCGTCTCCCCGCCCAAGCAGAGACATACTTGG
CAGAGCTGTCTTTCTACGACTCGACGCATGGAAACCGGGGGCCCCGCGCG
ACGAGCGTGAAATTCACCACCGCCGCCGCTCCTTCCAAGAAAAAGAAGGA
ATGCATTTTCGACCCTTTCGAGCTCAAGATGAAAAAATCCGCGAAACCGG
GCCTGGCCGAGAAGTACCAGCTGGCGATCGTCGGGGATTATCCCACAACG
GTTCGACCGTTTCAAACCGTTAAACTGACCCTGGACGTGGTCTCGGAGGG
ACCCTCCACGTTGATGATCAACGTCCTTGCCAAAAGTGACTTCAGCTGGG
CGGGAGGGAAAATCGTGCCGGTTCCCCCCGGCGCCAACGGGCTGATGACA
GTCCTCTTCGACATGGAAGGCGACCTGGTCGACAAGGAGGAGTACAGCAT
CGACGCCCTCCTTCTCAAGGACGCTAAGGACTACAAATCCGCCTACGTCT
CCGACACGGTCAAGAAGGTCTTCGGGGTCCTCACTCCCGTGGCCCCTCCC
TTGCCGGATCCTTTCCCACCGGCCACTCTCCCCGCTGCCGACATGGCGAA
GCCCCAGCCAGGGGCACCGGTGGCTGTGGAAAAAGAGCTCGATCCTGCCA
CGGGCGAGGTACTCAACTAGGGGGGATAAGGCAAGAGAGCGAGAGAGAGA
GTTGGGTGTAGAAAGAGCACGAGGGAGGCCCATGATGGGACGAAGTTCGG
GAGAGCTTCTTGCATGTGAAAGCCAAGAAACTATAGGGAAGAGTAAGGGG
TTCAGAGTAGATTAGGTGCCGAGGGGGGGCATTACGTTACGTTTTAGGGG
GGGGGGAGTGGGAGAGAATAGCGAGATCGGCGGGGGAAAAGGGAGAGGAG
ATGGGACATGGTGAAGGTAGCGAGAAGTCTGTACAGACGTAAGTTCAGCA
CCTACATGCTCGAGTAAGGATGAAATAGAGGGCTTATAAACTACGTTCAT
GTCAAGATATTGTACCATAGTGTGGGGTTTGCGATACTACAGCCGATGCT
ATGGTGCCTGCGTAGATATCATGGTTATAAGTATGGCGGCCGAATTTGAA
AGCACGAGGCTGAAGCTCCCAAAAAACAAGTCAAATGGATGGCAGTGCTA
ATAAAGCGAAGTCAATTCACAACTTTGTCAAGGGAATAGAAAACAGGGAA
GGTTACTCGCAGTGCTTTCTTTCATTTCGACTTCCTCATAAGCGCTGTTA
CGCTTTAATTCTTTCAAGGCTTTGAGA back to topprotein sequence of rna8163 >rna8163-protein ID=rna8163-protein|Name=rna8163|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MVVNGIMAVNKGSVTEDAIGSASRVIEMQESTTSVESCLPAPIPLCYLDG
SKDYKGETPRIVDACKSAGRRVSAVSILSPPSGPSPRLSEVSRSYYSNHR
NRAWDSWKAIRCKKWKEIEWQGRLEWALLKQEWKWIAMFFVAEYFNLIMH
NFVYWLEGKMWGASGPPPPLTDLGIMAFAGIFPLSYSWLVGFFLYLLIGM
VLVLCLGRLLLNNVPWGCPETVLEKREGETLRTCCIPVPFVYICKRACQV
LTIGLVLRVLSFVFTLEPNPADYCHPPFWDPPDALLEILGRIEIVGSCGD
LLFSAHTLHAMAMMLTVLRHAPGLYLVTGLAVASMVMVVISMLAFKNHYS
HDIVTAIYTSVLLWMLTPEPTVADCDLLKVELPPGDMWGPLAHVGRDDAR
LFFSCPRIA back to topmRNA from alignment at KK037247.1:726650..728586+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8163 ID=rna8163|Name=rna8163|organism=Nannochloropsis gaditana|type=mRNA|length=1937bp|location=Sequence derived from alignment at KK037247.1:726650..728586+ (Nannochloropsis gaditana)
ATGGTTGTAAATGGTATTATGGCTGTAAACAAGGGATCCGTTACCGAAGA
TGCCATTGGGAGTGCATCACGGGTAATCGAAATGCAGGAATCTACTACCT
CGGTCGAATCCTGTCTTCCTGCGCCCATCCCACTTTGCTATCTAGACGGA
AGCAAGGACTACAAAGGAGAAACGCCGAGGATAGTAGATGCTTGTAAAAG
CGCGGGTCGCCGCGTGTCAGCCGTAAGCATtttatctcctccttccggac
CTTCTCCGCGGTTATCAGAGGTGTCACGTAGCTATTATTCCAATCATCGG
AACCGCGCTTGGGATTCTTGGAAAGCCATTAGATGCaaaaaatggaagga
ggtgagTTTAGGAGttcaaggagaggatgaccaGGTGGAGGAATCcacag
gaggagaggatagTGCATTGAACGAATGTATGGGCCATCGGTAAAGTCCA
GCCTTGCACGGTACGTCTGAAATCGTCATCATATTTAATTGTGTACTCCT
TTCACCACGATGTCTCACAGATTGAATGGCAGGGCCGCCTGGAGTGGGCA
TTGTTGAAGCAGGAATGGAAGTGGATCGCGGTATGTGTGACGACCGTTAT
CGTAGAAAGCGCCCCgattcccccttttcctttggtTTGCCGTGTGCAGT
TTTTTAAACAGTGAATGGTCCTTCACAAATTGTGTCCCGAAGTAGACATT
TGCGTAGCTCTGGCGTCTGAAAAGAAATGTCAGTACAGAATCTCTCTGCT
CTTGCCCCCGTCTGCATCTCCCTGTTGATACGCTTTTCGCCCTCCGACCG
CCCCTCCGCACACACCTCCTGTTTTCCATCTTGCAGATGTTTTTTGTAGC
CGAATATTTTAATCTGATTATGCACAATTTTGTGTACTGgttggaaggaa
aaatgtGGGGAGCGTCGggtcccccgcctccgttgACAGACTTGGGCATC
ATGGCTTTTGCGGGaattttccccctctcctacaGCTGGTTGGTAGGTTT
TTTCTTGTATTTACTCATTGGGATGGTCTTGGTCCTTTGTCTGGGCCGCT
TGCTCCTGAACAATGTGCCCTGGGGGTGCCCGGAGACGGTGCTGGAGAAG
CGAGAGGGCGAGACGCTCCGCACCTGCTGCATACCCGTTCCCTTCGTCTA
CATTTGTAAACGGGCCTGTCAAGTCCTCACCATTGGATTggtcctccgcg
tcctttccttcgtcttTACCTTGGAACCGAACCCAGCCGACTactgccac
cctcccttttggGACCCCCCCGATGCCCTCCTAGAGATTTTGGGCCGGAT
CGAAATCGTGGGCAGCTGCGGAGATTTGCTCTTCTCCGCCCACACCCTGC
ACGCGATGGCCATGATGTTGACCGTCCTGAGGCATGCGCCCGGCCTCTAC
CTCGTGACGGGCCTGGCCGTCGCCTCGATGGTCATGGTGGTAATCTCCAT
GCTGGCCTTCAAGAACCATTACTCGCACGACATCGTGACCGGTAGGGCTc
cctgggaggagaaagaaggagggaagatctatggaggcaagcagggagag
gggcatgGTATGCCATACGTAGTTTCTCGTAACATCCATGTGGCTTTGTC
TCATACCTTTCTGAAACGAaacctttcccttttcccccttccattcctct
tctATCGTCCCCACTGTGTCAGCCATATACACAAGCGTCCTCCTTTGGAT
GCTGACGCCGGAGCCGACCGTCGCAGATTGCGACCTTTTGAAAGTCGAGC
TGCCTCCGGGTGACATGTGGGGTGAGGGGAGGTGACTGGGTAGGTGTTGC
ACGGAAGAAATcgcaaggaaagagagcaccactgagggaggggaacaaga
aaagcaaagcatTGATCTATAGGACCTCTGGCACACGTGGGAAGGGATGA
CGCACGTCTGTTCTTCTCTTGCCCCCGGATCGCATGA back to topCoding sequence (CDS) from alignment at KK037247.1:726650..728586+ >rna8163 ID=rna8163|Name=rna8163|organism=Nannochloropsis gaditana|type=CDS|length=6150bp|location=Sequence derived from alignment at KK037247.1:726650..728586+ (Nannochloropsis gaditana)
ATGGTTGTAAATGGTATTATGGCTGTAAACAAGGGATCCGTTACCGAAGA
TGCCATTGGGAGTGCATCACGGGTAATCGAAATGCAGGAATCTACTACCT
CGGTCGAATCCTGTCTTCCTGCGCCCATCCCACTTTGCTATCTAGACGGA
AGCAAGGACTACAAAGGAGAAACGCCGAGGATAGTAGATGCTTGTAAAAG
CGCGGGTCGCCGCGTGTCAGCCGTAAGCATtttatctcctccttccggac
CTTCTCCGCGGTTATCAGAGGTGTCACGTAGCTATTATTCCAATCATCGG
AACCGCGCTTGGGATTCTTGGAAAGCCATTAGATGCaaaaaatggaagga
gATTGAATGGCAGGGCCGCCTGGAGTGGGCATTGTTGAAGCAGGAATGGA
AGTGGATCGCGATGTTTTTTGTAGCCGAATATTTTAATCTGATTATGCAC
AATTTTGTGTACTGgttggaaggaaaaatgtGGGGAGCGTCGggtccccc
gcctccgttgACAGACTTGGGCATCATGGCTTTTGCGGGaattttccccc
tctcctacaGCTGGTTGGTAGGTTTTTTCTTGTATTTACTCATTGGGATG
GTCTTGGTCCTTTGTCTGGGCCGCTTGCTCCTGAACAATGTGCCCTGGGG
GTGCCCGGAGACGGTGCTGGAGAAGCGAGAGGGCGAGACGCTCCGCACCT
GCTGCATACCCGTTCCCTTCGTCTACATTTGTAAACGGGCCTGTCAAGTC
CTCACCATTGGATTggtcctccgcgtcctttccttcgtcttTACCTTGGA
ACCGAACCCAGCCGACTactgccaccctcccttttggGACCCCCCCGATG
CCCTCCTAGAGATTTTGGGCCGGATCGAAATCGTGGGCAGCTGCGGAGAT
TTGCTCTTCTCCGCCCACACCCTGCACGCGATGGCCATGATGTTGACCGT
CCTGAGGCATGCGCCCGGCCTCTACCTCGTGACGGGCCTGGCCGTCGCCT
CGATGGTCATGGTGGTAATCTCCATGCTGGCCTTCAAGAACCATTACTCG
CACGACATCGTGACCGCCATATACACAAGCGTCCTCCTTTGGATGCTGAC
GCCGGAGCCGACCGTCGCAGATTGCGACCTTTTGAAAGTCGAGCTGCCTC
CGGGTGACATGTGGGGACCTCTGGCACACGTGGGAAGGGATGACGCACGT
CTGTTCTTCTCTTGCCCCCGGATCGCATGAATGGTTGTAAATGGTATTAT
GGCTGTAAACAAGGGATCCGTTACCGAAGATGCCATTGGGAGTGCATCAC
GGGTAATCGAAATGCAGGAATCTACTACCTCGGTCGAATCCTGTCTTCCT
GCGCCCATCCCACTTTGCTATCTAGACGGAAGCAAGGACTACAAAGGAGA
AACGCCGAGGATAGTAGATGCTTGTAAAAGCGCGGGTCGCCGCGTGTCAG
CCGTAAGCATtttatctcctccttccggacCTTCTCCGCGGTTATCAGAG
GTGTCACGTAGCTATTATTCCAATCATCGGAACCGCGCTTGGGATTCTTG
GAAAGCCATTAGATGCaaaaaatggaaggagATTGAATGGCAGGGCCGCC
TGGAGTGGGCATTGTTGAAGCAGGAATGGAAGTGGATCGCGATGTTTTTT
GTAGCCGAATATTTTAATCTGATTATGCACAATTTTGTGTACTGgttgga
aggaaaaatgtGGGGAGCGTCGggtcccccgcctccgttgACAGACTTGG
GCATCATGGCTTTTGCGGGaattttccccctctcctacaGCTGGTTGGTA
GGTTTTTTCTTGTATTTACTCATTGGGATGGTCTTGGTCCTTTGTCTGGG
CCGCTTGCTCCTGAACAATGTGCCCTGGGGGTGCCCGGAGACGGTGCTGG
AGAAGCGAGAGGGCGAGACGCTCCGCACCTGCTGCATACCCGTTCCCTTC
GTCTACATTTGTAAACGGGCCTGTCAAGTCCTCACCATTGGATTggtcct
ccgcgtcctttccttcgtcttTACCTTGGAACCGAACCCAGCCGACTact
gccaccctcccttttggGACCCCCCCGATGCCCTCCTAGAGATTTTGGGC
CGGATCGAAATCGTGGGCAGCTGCGGAGATTTGCTCTTCTCCGCCCACAC
CCTGCACGCGATGGCCATGATGTTGACCGTCCTGAGGCATGCGCCCGGCC
TCTACCTCGTGACGGGCCTGGCCGTCGCCTCGATGGTCATGGTGGTAATC
TCCATGCTGGCCTTCAAGAACCATTACTCGCACGACATCGTGACCGCCAT
ATACACAAGCGTCCTCCTTTGGATGCTGACGCCGGAGCCGACCGTCGCAG
ATTGCGACCTTTTGAAAGTCGAGCTGCCTCCGGGTGACATGTGGGGACCT
CTGGCACACGTGGGAAGGGATGACGCACGTCTGTTCTTCTCTTGCCCCCG
GATCGCATGAATGGTTGTAAATGGTATTATGGCTGTAAACAAGGGATCCG
TTACCGAAGATGCCATTGGGAGTGCATCACGGGTAATCGAAATGCAGGAA
TCTACTACCTCGGTCGAATCCTGTCTTCCTGCGCCCATCCCACTTTGCTA
TCTAGACGGAAGCAAGGACTACAAAGGAGAAACGCCGAGGATAGTAGATG
CTTGTAAAAGCGCGGGTCGCCGCGTGTCAGCCGTAAGCATtttatctcct
ccttccggacCTTCTCCGCGGTTATCAGAGGTGTCACGTAGCTATTATTC
CAATCATCGGAACCGCGCTTGGGATTCTTGGAAAGCCATTAGATGCaaaa
aatggaaggagATTGAATGGCAGGGCCGCCTGGAGTGGGCATTGTTGAAG
CAGGAATGGAAGTGGATCGCGATGTTTTTTGTAGCCGAATATTTTAATCT
GATTATGCACAATTTTGTGTACTGgttggaaggaaaaatgtGGGGAGCGT
CGggtcccccgcctccgttgACAGACTTGGGCATCATGGCTTTTGCGGGa
attttccccctctcctacaGCTGGTTGGTAGGTTTTTTCTTGTATTTACT
CATTGGGATGGTCTTGGTCCTTTGTCTGGGCCGCTTGCTCCTGAACAATG
TGCCCTGGGGGTGCCCGGAGACGGTGCTGGAGAAGCGAGAGGGCGAGACG
CTCCGCACCTGCTGCATACCCGTTCCCTTCGTCTACATTTGTAAACGGGC
CTGTCAAGTCCTCACCATTGGATTggtcctccgcgtcctttccttcgtct
tTACCTTGGAACCGAACCCAGCCGACTactgccaccctcccttttggGAC
CCCCCCGATGCCCTCCTAGAGATTTTGGGCCGGATCGAAATCGTGGGCAG
CTGCGGAGATTTGCTCTTCTCCGCCCACACCCTGCACGCGATGGCCATGA
TGTTGACCGTCCTGAGGCATGCGCCCGGCCTCTACCTCGTGACGGGCCTG
GCCGTCGCCTCGATGGTCATGGTGGTAATCTCCATGCTGGCCTTCAAGAA
CCATTACTCGCACGACATCGTGACCGCCATATACACAAGCGTCCTCCTTT
GGATGCTGACGCCGGAGCCGACCGTCGCAGATTGCGACCTTTTGAAAGTC
GAGCTGCCTCCGGGTGACATGTGGGGACCTCTGGCACACGTGGGAAGGGA
TGACGCACGTCTGTTCTTCTCTTGCCCCCGGATCGCATGAATGGTTGTAA
ATGGTATTATGGCTGTAAACAAGGGATCCGTTACCGAAGATGCCATTGGG
AGTGCATCACGGGTAATCGAAATGCAGGAATCTACTACCTCGGTCGAATC
CTGTCTTCCTGCGCCCATCCCACTTTGCTATCTAGACGGAAGCAAGGACT
ACAAAGGAGAAACGCCGAGGATAGTAGATGCTTGTAAAAGCGCGGGTCGC
CGCGTGTCAGCCGTAAGCATtttatctcctccttccggacCTTCTCCGCG
GTTATCAGAGGTGTCACGTAGCTATTATTCCAATCATCGGAACCGCGCTT
GGGATTCTTGGAAAGCCATTAGATGCaaaaaatggaaggagATTGAATGG
CAGGGCCGCCTGGAGTGGGCATTGTTGAAGCAGGAATGGAAGTGGATCGC
GATGTTTTTTGTAGCCGAATATTTTAATCTGATTATGCACAATTTTGTGT
ACTGgttggaaggaaaaatgtGGGGAGCGTCGggtcccccgcctccgttg
ACAGACTTGGGCATCATGGCTTTTGCGGGaattttccccctctcctacaG
CTGGTTGGTAGGTTTTTTCTTGTATTTACTCATTGGGATGGTCTTGGTCC
TTTGTCTGGGCCGCTTGCTCCTGAACAATGTGCCCTGGGGGTGCCCGGAG
ACGGTGCTGGAGAAGCGAGAGGGCGAGACGCTCCGCACCTGCTGCATACC
CGTTCCCTTCGTCTACATTTGTAAACGGGCCTGTCAAGTCCTCACCATTG
GATTggtcctccgcgtcctttccttcgtcttTACCTTGGAACCGAACCCA
GCCGACTactgccaccctcccttttggGACCCCCCCGATGCCCTCCTAGA
GATTTTGGGCCGGATCGAAATCGTGGGCAGCTGCGGAGATTTGCTCTTCT
CCGCCCACACCCTGCACGCGATGGCCATGATGTTGACCGTCCTGAGGCAT
GCGCCCGGCCTCTACCTCGTGACGGGCCTGGCCGTCGCCTCGATGGTCAT
GGTGGTAATCTCCATGCTGGCCTTCAAGAACCATTACTCGCACGACATCG
TGACCGCCATATACACAAGCGTCCTCCTTTGGATGCTGACGCCGGAGCCG
ACCGTCGCAGATTGCGACCTTTTGAAAGTCGAGCTGCCTCCGGGTGACAT
GTGGGGACCTCTGGCACACGTGGGAAGGGATGACGCACGTCTGTTCTTCT
CTTGCCCCCGGATCGCATGAATGGTTGTAAATGGTATTATGGCTGTAAAC
AAGGGATCCGTTACCGAAGATGCCATTGGGAGTGCATCACGGGTAATCGA
AATGCAGGAATCTACTACCTCGGTCGAATCCTGTCTTCCTGCGCCCATCC
CACTTTGCTATCTAGACGGAAGCAAGGACTACAAAGGAGAAACGCCGAGG
ATAGTAGATGCTTGTAAAAGCGCGGGTCGCCGCGTGTCAGCCGTAAGCAT
tttatctcctccttccggacCTTCTCCGCGGTTATCAGAGGTGTCACGTA
GCTATTATTCCAATCATCGGAACCGCGCTTGGGATTCTTGGAAAGCCATT
AGATGCaaaaaatggaaggagATTGAATGGCAGGGCCGCCTGGAGTGGGC
ATTGTTGAAGCAGGAATGGAAGTGGATCGCGATGTTTTTTGTAGCCGAAT
ATTTTAATCTGATTATGCACAATTTTGTGTACTGgttggaaggaaaaatg
tGGGGAGCGTCGggtcccccgcctccgttgACAGACTTGGGCATCATGGC
TTTTGCGGGaattttccccctctcctacaGCTGGTTGGTAGGTTTTTTCT
TGTATTTACTCATTGGGATGGTCTTGGTCCTTTGTCTGGGCCGCTTGCTC
CTGAACAATGTGCCCTGGGGGTGCCCGGAGACGGTGCTGGAGAAGCGAGA
GGGCGAGACGCTCCGCACCTGCTGCATACCCGTTCCCTTCGTCTACATTT
GTAAACGGGCCTGTCAAGTCCTCACCATTGGATTggtcctccgcgtcctt
tccttcgtcttTACCTTGGAACCGAACCCAGCCGACTactgccaccctcc
cttttggGACCCCCCCGATGCCCTCCTAGAGATTTTGGGCCGGATCGAAA
TCGTGGGCAGCTGCGGAGATTTGCTCTTCTCCGCCCACACCCTGCACGCG
ATGGCCATGATGTTGACCGTCCTGAGGCATGCGCCCGGCCTCTACCTCGT
GACGGGCCTGGCCGTCGCCTCGATGGTCATGGTGGTAATCTCCATGCTGG
CCTTCAAGAACCATTACTCGCACGACATCGTGACCGCCATATACACAAGC
GTCCTCCTTTGGATGCTGACGCCGGAGCCGACCGTCGCAGATTGCGACCT
TTTGAAAGTCGAGCTGCCTCCGGGTGACATGTGGGGACCTCTGGCACACG
TGGGAAGGGATGACGCACGTCTGTTCTTCTCTTGCCCCCGGATCGCATGA back to top
|