rna8162, rna8162 (mRNA) Nannochloropsis gaditana

Overview
Namerna8162
Unique Namerna8162
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length229
Alignment locationKK037247.1:724293..726011 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100290g1.9874.mrna
Orig protein idgnl|cribi|Naga_100290g1.9874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:724293..726011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100290g1gene7906Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8162rna8162-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22535.1cds8138Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8162 ID=rna8162|Name=rna8162|organism=Nannochloropsis gaditana|type=mRNA|length=229bp
ATGCGCCGAGTTGCCTTTCTAGAGGCACGCGACTTATCCTTCTCAATCCC
TCCCTCCCACCTTCCCTCCCTCCCGCCCTCCCTTGCGTCTCCCAGAACAA
ACTGTTCTGGGTCGACTACAGCAAAAAGTGTGGTTTCTGGTTCAATCGAT
TCGACGACGGCTCGGTCGATTTCTCGCACGCGCATGCTTTCCTCAGCACC
GTGGGCGCCCAGTCAGGCGGGGTAAGGGG
back to top

protein sequence of rna8162

>rna8162-protein ID=rna8162-protein|Name=rna8162|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MVTANKATTDVRLPAQAETYLAELSFYDSTHGNRGPRATSVKFTTAAAPS
KKKKECIFDPFELKMKKSAKPGLAEKYQLAIVGDYPTTVRPFQTVKLTLD
VVSEGPSTLMINVLAKSDFSWAGGKIVPVPPGANGLMTVLFDMEGDLVDK
EEYSIDALLLKDAKDYKSAYVSDTVKKVFGVLTPVAPPLPDPFPPATLPA
ADMAKPQPGAPVAVEKELDPATGEVLN
back to top

mRNA from alignment at KK037247.1:724293..726011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8162 ID=rna8162|Name=rna8162|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp|location=Sequence derived from alignment at KK037247.1:724293..726011+ (Nannochloropsis gaditana)
ccctccctccagggcGCCGTCGTCGTCAAAAGTGCCATGGTCACGGCCAA
CAAGGCGACCACGGACGTGCGTCTCCCCGCCCAAGCAGAGACATACTTGG
CAGAGCTGTCTTTCTACGACTCGACGCATGGAAACCGGGGGCCCCGCGCG
ACGAGCGTGAAAttcaccaccgccgccgctccttccaagaaaaagaaggt
ggGTGCAGGGGCTACCGGGGCTCTTCCACAGggcatccgggtcgcttttc
GGACAAAAGATGGGGCGTTGGCTGACCCCCTGGCCCTGCCTCTTtggttc
cctcccctccctccaccctaaTTCATGTcgttgccctctccttctagGAA
TGCATTTTCGACCCTTTCGAGCTCAAGATGAAAAAATCCGCGAAACCGGG
CCTGGCCGAGAAGTACCAGCTGGCGATCGTCGGGGATTATCCCACAACGG
TTCGACCGTTTCAAACCGTTAAACTGACCCTGGACGTGGTCTCGGAGGGA
CCCTCCACGTTGATGATCAACGTCCTTGCCAAAAGTGACTTCagctgggc
gggagggaaaatcGTGCCGGGTGAGttaaaagggaagggaagggagggca
tttCCTTGACACCTGAGTGCATGTTGCAATCTTGAGACTCGATGTAATTT
gttcatcctccttcgcttccccttcccggtcGCGCCCCAGTTCCCCCCGG
CGCCAACGGGCTGATGACAGTCCTCTTCGACATGGAAGGCGACCTggtcg
acaaggaggagtacAGCAtcgacgccctccttctcaaggACGCTAAGGAC
TACAAATCGTgagtttcctccctcttgtccacCTCTCAacccttgtctcc
ctccgcgaTCGACTTcatctgccctcccctcccccatgaGACACCACCCA
CAagttccctccccccctccctccccatcagcGCCTACGTCTCCGACACG
GTCAAGAAGGTCTTCGGGGTCCTCACTCCcgtggcccctcccttgccggA
TCCTTTCCCACCGGCCACTCTCCCCGCTGCCGACATGGCGAAGCCCCAGC
CAGGGGCACCGGTGGCTGTGGAAAAAGAGCTCGATCCTGCCACGGGCGAG
GTACTCAACTAGGGGGGATAAGGCAAgagagcgagagagagagtTGGGTG
TAGAAAGAGCACGAGGGAGGCCCATGATGGGACGAAGTTCGGGAGAGCTT
CTTGCATGTGAAAGCCAAGAAACTATAGGGAAGAGTAAGGGGTTCAGAGT
AGATTAGGTGCCGAGGGGGGGCATTACGTTACGTtttaggggggggggag
tgggagagaaTAGCGAGAtcggcgggggaaaagggagaggagatgggaCA
TGGTGAAGGTAGCGAGAAGTCTGTACAGACGTAAGTTCAGCACCTACATG
CTCGAGTAAGGATGAAATAGAGGGCTTATAAACTACGTTCATGTCAAGAT
ATTGTACCATAGTGTGGGGTTTGCGATACTACAGCCGATGCTATGGTGCC
TGCGTAGATATCATGGTTATAAGTATGGCGGCCGAATTTGAAAGCACGAG
GCTGAAGCTCCCAAAAAACAAGTCAAATGGATGGCAGTGCTAATAAAGCG
AAGTCAATTCACAACTTTGTCAAGGGAATAGAAAACAGGGAAGGTTACTC
GCAGTGCTTTCTTTCATTTCGACTTCCTCATAAGCGCTGTTACGCTTTAA
TTCTTTCAAGGCtttgaga
back to top

Coding sequence (CDS) from alignment at KK037247.1:724293..726011+

>rna8162 ID=rna8162|Name=rna8162|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at KK037247.1:724293..726011+ (Nannochloropsis gaditana)
ATGGTCACGGCCAACAAGGCGACCACGGACGTGCGTCTCCCCGCCCAAGC
AGAGACATACTTGGCAGAGCTGTCTTTCTACGACTCGACGCATGGAAACC
GGGGGCCCCGCGCGACGAGCGTGAAAttcaccaccgccgccgctccttcc
aagaaaaagaagGAATGCATTTTCGACCCTTTCGAGCTCAAGATGAAAAA
ATCCGCGAAACCGGGCCTGGCCGAGAAGTACCAGCTGGCGATCGTCGGGG
ATTATCCCACAACGGTTCGACCGTTTCAAACCGTTAAACTGACCCTGGAC
GTGGTCTCGGAGGGACCCTCCACGTTGATGATCAACGTCCTTGCCAAAAG
TGACTTCagctgggcgggagggaaaatcGTGCCGGTTCCCCCCGGCGCCA
ACGGGCTGATGACAGTCCTCTTCGACATGGAAGGCGACCTggtcgacaag
gaggagtacAGCAtcgacgccctccttctcaaggACGCTAAGGACTACAA
ATCcGCCTACGTCTCCGACACGGTCAAGAAGGTCTTCGGGGTCCTCACTC
CcgtggcccctcccttgccggATCCTTTCCCACCGGCCACTCTCCCCGCT
GCCGACATGGCGAAGCCCCAGCCAGGGGCACCGGTGGCTGTGGAAAAAGA
GCTCGATCCTGCCACGGGCGAGGTACTCAACTAGATGGTCACGGCCAACA
AGGCGACCACGGACGTGCGTCTCCCCGCCCAAGCAGAGACATACTTGGCA
GAGCTGTCTTTCTACGACTCGACGCATGGAAACCGGGGGCCCCGCGCGAC
GAGCGTGAAAttcaccaccgccgccgctccttccaagaaaaagaagGAAT
GCATTTTCGACCCTTTCGAGCTCAAGATGAAAAAATCCGCGAAACCGGGC
CTGGCCGAGAAGTACCAGCTGGCGATCGTCGGGGATTATCCCACAACGGT
TCGACCGTTTCAAACCGTTAAACTGACCCTGGACGTGGTCTCGGAGGGAC
CCTCCACGTTGATGATCAACGTCCTTGCCAAAAGTGACTTCagctgggcg
ggagggaaaatcGTGCCGGTTCCCCCCGGCGCCAACGGGCTGATGACAGT
CCTCTTCGACATGGAAGGCGACCTggtcgacaaggaggagtacAGCAtcg
acgccctccttctcaaggACGCTAAGGACTACAAATCcGCCTACGTCTCC
GACACGGTCAAGAAGGTCTTCGGGGTCCTCACTCCcgtggcccctccctt
gccggATCCTTTCCCACCGGCCACTCTCCCCGCTGCCGACATGGCGAAGC
CCCAGCCAGGGGCACCGGTGGCTGTGGAAAAAGAGCTCGATCCTGCCACG
GGCGAGGTACTCAACTAGATGGTCACGGCCAACAAGGCGACCACGGACGT
GCGTCTCCCCGCCCAAGCAGAGACATACTTGGCAGAGCTGTCTTTCTACG
ACTCGACGCATGGAAACCGGGGGCCCCGCGCGACGAGCGTGAAAttcacc
accgccgccgctccttccaagaaaaagaagGAATGCATTTTCGACCCTTT
CGAGCTCAAGATGAAAAAATCCGCGAAACCGGGCCTGGCCGAGAAGTACC
AGCTGGCGATCGTCGGGGATTATCCCACAACGGTTCGACCGTTTCAAACC
GTTAAACTGACCCTGGACGTGGTCTCGGAGGGACCCTCCACGTTGATGAT
CAACGTCCTTGCCAAAAGTGACTTCagctgggcgggagggaaaatcGTGC
CGGTTCCCCCCGGCGCCAACGGGCTGATGACAGTCCTCTTCGACATGGAA
GGCGACCTggtcgacaaggaggagtacAGCAtcgacgccctccttctcaa
ggACGCTAAGGACTACAAATCcGCCTACGTCTCCGACACGGTCAAGAAGG
TCTTCGGGGTCCTCACTCCcgtggcccctcccttgccggATCCTTTCCCA
CCGGCCACTCTCCCCGCTGCCGACATGGCGAAGCCCCAGCCAGGGGCACC
GGTGGCTGTGGAAAAAGAGCTCGATCCTGCCACGGGCGAGGTACTCAACT
AGATGGTCACGGCCAACAAGGCGACCACGGACGTGCGTCTCCCCGCCCAA
GCAGAGACATACTTGGCAGAGCTGTCTTTCTACGACTCGACGCATGGAAA
CCGGGGGCCCCGCGCGACGAGCGTGAAAttcaccaccgccgccgctcctt
ccaagaaaaagaagGAATGCATTTTCGACCCTTTCGAGCTCAAGATGAAA
AAATCCGCGAAACCGGGCCTGGCCGAGAAGTACCAGCTGGCGATCGTCGG
GGATTATCCCACAACGGTTCGACCGTTTCAAACCGTTAAACTGACCCTGG
ACGTGGTCTCGGAGGGACCCTCCACGTTGATGATCAACGTCCTTGCCAAA
AGTGACTTCagctgggcgggagggaaaatcGTGCCGGTTCCCCCCGGCGC
CAACGGGCTGATGACAGTCCTCTTCGACATGGAAGGCGACCTggtcgaca
aggaggagtacAGCAtcgacgccctccttctcaaggACGCTAAGGACTAC
AAATCcGCCTACGTCTCCGACACGGTCAAGAAGGTCTTCGGGGTCCTCAC
TCCcgtggcccctcccttgccggATCCTTTCCCACCGGCCACTCTCCCCG
CTGCCGACATGGCGAAGCCCCAGCCAGGGGCACCGGTGGCTGTGGAAAAA
GAGCTCGATCCTGCCACGGGCGAGGTACTCAACTAG
back to top
Synonyms
Publications