rna8155, rna8155 (mRNA) Nannochloropsis gaditana

Overview
Namerna8155
Unique Namerna8155
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationKK037247.1:711150..712403 +

Link to JBrowse

Properties
Property NameValue
ProductUbiquitin fusion degradation protein UFD1
Orig transcript idgnl|cribi|Naga_101372g2.9342.mrna
Orig protein idgnl|cribi|Naga_101372g2.9342
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:711150..712403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101372g2gene7899Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8155rna8155-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22542.1cds8131Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8155 ID=rna8155|Name=rna8155|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGCACCCATCCATTCCTTTCCTTTCCCCTTGTCTTTGTCCTCCTCAGAC
GCCGGGAGCCGTCCTGGGCGTGGCGAACGTTGGGGAACTGAAAAAAGTCC
GAAAAGCCCGAAAACTAGCCTACACCGAGCTGGGGGAACGTTTGAAACGA
AGCGTTTCCTTCAAGGAGGTATACTTGTGGCGCTTGCGTTTCCTTCACTG
TTAG
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protein sequence of rna8155

>rna8155-protein ID=rna8155-protein|Name=rna8155|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSD
KIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYL
PYWMMQNLLLEEGGFLQVGMDEGR
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mRNA from alignment at KK037247.1:711150..712403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8155 ID=rna8155|Name=rna8155|organism=Nannochloropsis gaditana|type=mRNA|length=1254bp|location=Sequence derived from alignment at KK037247.1:711150..712403+ (Nannochloropsis gaditana)
AGCGTTGCTTGTTGCCGTCGAGGGAAGGCACCTTCAGCGCATAAATACAG
GGCGCACATGCAGCGAGAAGGGACACAGAGCCGGAAATGAACTATCTGCA
TGTCACGAaagatggtggtggtggtaaCAGGATTGTGTTTGGGTGGGATG
CTATGTCTTTGAGCGTTACATGAAAATAGAAGTCTTTTTCTGACTTCCTG
AGTGGTCGCCTCTCACCGTAGCGATTACGACCCCCGCAGTCGCAGACATA
GTACCACTGTGTGCTTTTTAGGAAGAAGGTATATTCGTGCTTTCACGCTT
GACGTCTCGATTTGTGGCAGAGGGTCTTACCTCTGCCAGCATCCACGTGC
ACTCCTTCGACGCAACTGTGAATTACGCTTCCCACAAAGCGGAACATTGT
GTGCTCAAAAGTCTCTTGACACGTTGTGAATCTCATTAGGCCCGTGTCAT
GTGCGCGGGTGTGGACACCAGGTACAAGAGAAACTGTTGCAGAGATGTGC
ATGACCTGTGTGGCCCCCTTCAGGATGGAAGTACCTCTGTGGGGCTCAAT
GTGGCAGCATTCATGCAACCACATGTTGTGCTGTCTTGTCAAAGCTTGAC
TCTCCAGGTCTTTCATCCCGTGGAGGAGTGAGGCTTTCCGGGCGAGGGTG
CACGTCAGGGTGGAACCTTCCTATCCGACCCGTTGTGTGTCTTCGTCATC
attgccaccctcctcttttaCTTGGACGCGTTGATCTCATGCAGTGACCC
GCCACTCCTCAACATTACAGGCATCTTTGTGGTGGCATTGTCCGCTTCTG
CTCTCATTCTGTGCCCCCGCAGCTTGTCTCGCAGGACCACCTCCCACTCT
AACATCTAACCCTCGATTGACACAGACGGTCATGGCGGGATTTTTCGGTG
GAGtagggggcggagggccaTTCGCAGCCATGGGGGGAATGGGCGGACTA
CGGCTGCCGCAAGTCTTCGATGAGGAATATAATTCGTACTCCTTTGTCTT
CCAGGACAAGGCTCATTTGGAAGGCAGTGACAAGATCTTTCTGCCGCCTT
CTGCCCTCGACACGCTGGCCCGCCTCCACATTGACTACCCTATGCTCTTC
CAAATTACGTGCCGGGCTTCGGGGAAGCGGACGCATTGCGGTGTCTTGGA
GTTctcggcggcggaggggagcTGCTATTTGCCTTATTGGATGATGCAAA
ATCTCcttttggaagagggagggtttCTCCAGGTGGGTATGGACGAGGGT
CGGG
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Coding sequence (CDS) from alignment at KK037247.1:711150..712403+

>rna8155 ID=rna8155|Name=rna8155|organism=Nannochloropsis gaditana|type=CDS|length=373bp|location=Sequence derived from alignment at KK037247.1:711150..712403+ (Nannochloropsis gaditana)
ATGGCGGGATTTTTCGGTGGAGtagggggcggagggccaTTCGCAGCCAT
GGGGGGAATGGGCGGACTACGGCTGCCGCAAGTCTTCGATGAGGAATATA
ATTCGTACTCCTTTGTCTTCCAGGACAAGGCTCATTTGGAAGGCAGTGAC
AAGATCTTTCTGCCGCCTTCTGCCCTCGACACGCTGGCCCGCCTCCACAT
TGACTACCCTATGCTCTTCCAAATTACGTGCCGGGCTTCGGGGAAGCGGA
CGCATTGCGGTGTCTTGGAGTTctcggcggcggaggggagcTGCTATTTG
CCTTATTGGATGATGCAAAATCTCcttttggaagagggagggtttCTCCA
GGTGGGTATGGACGAGGGTCGGG
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Synonyms
Publications