EWM22542.1, cds8131 (CDS) Nannochloropsis gaditana

Overview
NameEWM22542.1
Unique Namecds8131
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:712031..712403 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22542.1
ProductUbiquitin fusion degradation protein UFD1
Partialtrue
Orig transcript idgnl|cribi|Naga_101372g2.9342.mrna
GbkeyCDS
End range.
End range712403
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:712031..712403 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004854UFD1
Homology
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|585103074|gb|EWM22542.1| (Ubiquitin fusion degradation protein UFD1, partial [Nannochloropsis gaditana])

HSP 1 Score: 255.373 bits (651), Expect = 3.971e-86
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124
            MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR
Sbjct:    1 MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|553190965|ref|XP_005855302.1| (ubiquitin fusion degradation protein 1 [Nannochloropsis gaditana CCMP526] >gi|422293758|gb|EKU21058.1| ubiquitin fusion degradation protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.483 bits (576), Expect = 1.182e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:   17 MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124
            MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR
Sbjct:    1 MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 108          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|813163861|ref|XP_012202991.1| (hypothetical protein SPRG_08361 [Saprolegnia parasitica CBS 223.65] >gi|641532249|gb|KDO26286.1| hypothetical protein SPRG_08361 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 151.754 bits (382), Expect = 9.083e-43
Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    4 FFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FFGG GG  PF    G G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF+I   A  + +HCGVLEFSA EGSCY+PYWMMQN+ L EG  L +
Sbjct:    2 FFGGQGGNNPFGVNFGFGH-NFPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKIKNEAVNRVSHCGVLEFSAPEGSCYMPYWMMQNMFLTEGSILNI 115          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|669147048|ref|XP_008609086.1| (hypothetical protein SDRG_05164 [Saprolegnia diclina VS20] >gi|530739324|gb|EQC37566.1| hypothetical protein SDRG_05164 [Saprolegnia diclina VS20])

HSP 1 Score: 151.369 bits (381), Expect = 1.341e-42
Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    4 FFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FFGG GG  PF    G G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF+I   A  + +HCGVLEFSA EGSCY+PYWMMQN+ L EG  L +
Sbjct:    2 FFGGQGGNNPFGVNFGFGH-NFPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKIKNEAVNRVSHCGVLEFSAPEGSCYMPYWMMQNMFLTEGSILNI 115          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|673034808|ref|XP_008871365.1| (hypothetical protein H310_07707 [Aphanomyces invadans] >gi|574473336|gb|ETW00340.1| hypothetical protein H310_07707 [Aphanomyces invadans])

HSP 1 Score: 146.747 bits (369), Expect = 8.267e-41
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 0
Query:    4 FFGG--VGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FFGG       PF    G GG   PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLA++H++YPMLF+IT  A  + +HCGVLEFSA EGSCY+PYWMMQN+ L EGG + +
Sbjct:    2 FFGGGRNRQDNPFGINFGFGGHSYPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLAQMHVEYPMLFKITNEAVNRSSHCGVLEFSAPEGSCYMPYWMMQNMFLNEGGIINI 118          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|570315660|gb|ETO63608.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1976])

HSP 1 Score: 145.206 bits (365), Expect = 8.910e-40
Identity = 70/114 (61.40%), Postives = 80/114 (70.18%), Query Frame = 0
Query:    5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FG  G G PF A    G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF++T     + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct:    2 FGFGGDGNPFGAQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 113          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|570315659|gb|ETO63607.1| (hypothetical protein F444_18727 [Phytophthora parasitica P1976])

HSP 1 Score: 145.206 bits (365), Expect = 1.311e-39
Identity = 70/114 (61.40%), Postives = 80/114 (70.18%), Query Frame = 0
Query:    5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FG  G G PF A    G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF++T     + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct:   24 FGFGGDGNPFGAQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 135          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|568007584|gb|ETL81821.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 143.665 bits (361), Expect = 3.452e-39
Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FG  G G PF      G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF++T     + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct:    2 FGFGGDGNPFGVQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 113          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|325183700|emb|CCA18159.1| (ubiquitin fusion degradation protein putative [Albugo laibachii Nc14])

HSP 1 Score: 142.51 bits (358), Expect = 3.881e-39
Identity = 66/114 (57.89%), Postives = 77/114 (67.54%), Query Frame = 0
Query:    5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            F   G G PF     +GG   PQ FDE +  YS  F DK HLE  DKI LPPSAL+ LARLHI+YPMLF++T     + +HCGVLEFSA EGSCY+PYWMMQNL + EG  + V
Sbjct:    2 FALRGDGNPFGLNINLGG-NFPQKFDEHFRVYSMSFCDKGHLEDGDKILLPPSALEVLARLHIEYPMLFKVTNEGVNRYSHCGVLEFSATEGSCYMPYWMMQNLFINEGDIINV 114          
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|675209153|ref|XP_008913461.1| (hypothetical protein PPTG_17559 [Phytophthora parasitica INRA-310] >gi|566011942|gb|ETI34853.1| hypothetical protein F443_18729 [Phytophthora parasitica P1569] >gi|568007583|gb|ETL81820.1| hypothetical protein L917_17929 [Phytophthora parasitica] >gi|568037437|gb|ETM35022.1| hypothetical protein L914_18015 [Phytophthora parasitica] >gi|568086242|gb|ETN01134.1| hypothetical protein PPTG_17559 [Phytophthora parasitica INRA-310] >gi|570969728|gb|ETP32847.1| hypothetical protein F442_18541 [Phytophthora parasitica P10297])

HSP 1 Score: 143.665 bits (361), Expect = 4.253e-39
Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
            FG  G G PF      G    PQ FDE Y  Y   F DKAHLE  DKI LPPSAL+TLARLHI+YPMLF++T     + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct:    6 FGFGGDGNPFGVQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 117          
The following BLAST results are available for this feature:
BLAST of EWM22542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103074|gb|EWM22542.1|3.971e-86100.00Ubiquitin fusion degradation protein UFD1, partial... [more]
gi|553190965|ref|XP_005855302.1|1.182e-74100.00ubiquitin fusion degradation protein 1 [Nannochlor... [more]
gi|813163861|ref|XP_012202991.1|9.083e-4362.61hypothetical protein SPRG_08361 [Saprolegnia paras... [more]
gi|669147048|ref|XP_008609086.1|1.341e-4262.61hypothetical protein SDRG_05164 [Saprolegnia dicli... [more]
gi|673034808|ref|XP_008871365.1|8.267e-4158.97hypothetical protein H310_07707 [Aphanomyces invad... [more]
gi|570315660|gb|ETO63608.1|8.910e-4061.40hypothetical protein, variant 1 [Phytophthora para... [more]
gi|570315659|gb|ETO63607.1|1.311e-3961.40hypothetical protein F444_18727 [Phytophthora para... [more]
gi|568007584|gb|ETL81821.1|3.452e-3960.53hypothetical protein, variant 1 [Phytophthora para... [more]
gi|325183700|emb|CCA18159.1|3.881e-3957.89ubiquitin fusion degradation protein putative [Alb... [more]
gi|675209153|ref|XP_008913461.1|4.253e-3960.53hypothetical protein PPTG_17559 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8155rna8155Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications