EWM22542.1, cds8131 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|585103074|gb|EWM22542.1| (Ubiquitin fusion degradation protein UFD1, partial [Nannochloropsis gaditana]) HSP 1 Score: 255.373 bits (651), Expect = 3.971e-86 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124
MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR
Sbjct: 1 MAGFFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|553190965|ref|XP_005855302.1| (ubiquitin fusion degradation protein 1 [Nannochloropsis gaditana CCMP526] >gi|422293758|gb|EKU21058.1| ubiquitin fusion degradation protein 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 226.483 bits (576), Expect = 1.182e-74 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 17 MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 124
MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR
Sbjct: 1 MGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQVGMDEGR 108
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|813163861|ref|XP_012202991.1| (hypothetical protein SPRG_08361 [Saprolegnia parasitica CBS 223.65] >gi|641532249|gb|KDO26286.1| hypothetical protein SPRG_08361 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 151.754 bits (382), Expect = 9.083e-43 Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0
Query: 4 FFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FFGG GG PF G G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF+I A + +HCGVLEFSA EGSCY+PYWMMQN+ L EG L +
Sbjct: 2 FFGGQGGNNPFGVNFGFGH-NFPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKIKNEAVNRVSHCGVLEFSAPEGSCYMPYWMMQNMFLTEGSILNI 115
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|669147048|ref|XP_008609086.1| (hypothetical protein SDRG_05164 [Saprolegnia diclina VS20] >gi|530739324|gb|EQC37566.1| hypothetical protein SDRG_05164 [Saprolegnia diclina VS20]) HSP 1 Score: 151.369 bits (381), Expect = 1.341e-42 Identity = 72/115 (62.61%), Postives = 80/115 (69.57%), Query Frame = 0
Query: 4 FFGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FFGG GG PF G G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF+I A + +HCGVLEFSA EGSCY+PYWMMQN+ L EG L +
Sbjct: 2 FFGGQGGNNPFGVNFGFGH-NFPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKIKNEAVNRVSHCGVLEFSAPEGSCYMPYWMMQNMFLTEGSILNI 115
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|673034808|ref|XP_008871365.1| (hypothetical protein H310_07707 [Aphanomyces invadans] >gi|574473336|gb|ETW00340.1| hypothetical protein H310_07707 [Aphanomyces invadans]) HSP 1 Score: 146.747 bits (369), Expect = 8.267e-41 Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 0
Query: 4 FFGG--VGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FFGG PF G GG PQ FDE Y Y F DKAHLE DKI LPPSAL+TLA++H++YPMLF+IT A + +HCGVLEFSA EGSCY+PYWMMQN+ L EGG + +
Sbjct: 2 FFGGGRNRQDNPFGINFGFGGHSYPQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLAQMHVEYPMLFKITNEAVNRSSHCGVLEFSAPEGSCYMPYWMMQNMFLNEGGIINI 118
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|570315660|gb|ETO63608.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1976]) HSP 1 Score: 145.206 bits (365), Expect = 8.910e-40 Identity = 70/114 (61.40%), Postives = 80/114 (70.18%), Query Frame = 0
Query: 5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FG G G PF A G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF++T + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct: 2 FGFGGDGNPFGAQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 113
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|570315659|gb|ETO63607.1| (hypothetical protein F444_18727 [Phytophthora parasitica P1976]) HSP 1 Score: 145.206 bits (365), Expect = 1.311e-39 Identity = 70/114 (61.40%), Postives = 80/114 (70.18%), Query Frame = 0
Query: 5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FG G G PF A G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF++T + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct: 24 FGFGGDGNPFGAQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 135
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|568007584|gb|ETL81821.1| (hypothetical protein, variant 1 [Phytophthora parasitica]) HSP 1 Score: 143.665 bits (361), Expect = 3.452e-39 Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 0
Query: 5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FG G G PF G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF++T + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct: 2 FGFGGDGNPFGVQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 113
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|325183700|emb|CCA18159.1| (ubiquitin fusion degradation protein putative [Albugo laibachii Nc14]) HSP 1 Score: 142.51 bits (358), Expect = 3.881e-39 Identity = 66/114 (57.89%), Postives = 77/114 (67.54%), Query Frame = 0
Query: 5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
F G G PF +GG PQ FDE + YS F DK HLE DKI LPPSAL+ LARLHI+YPMLF++T + +HCGVLEFSA EGSCY+PYWMMQNL + EG + V
Sbjct: 2 FALRGDGNPFGLNINLGG-NFPQKFDEHFRVYSMSFCDKGHLEDGDKILLPPSALEVLARLHIEYPMLFKVTNEGVNRYSHCGVLEFSATEGSCYMPYWMMQNLFINEGDIINV 114
BLAST of EWM22542.1 vs. NCBI_GenBank
Match: gi|675209153|ref|XP_008913461.1| (hypothetical protein PPTG_17559 [Phytophthora parasitica INRA-310] >gi|566011942|gb|ETI34853.1| hypothetical protein F443_18729 [Phytophthora parasitica P1569] >gi|568007583|gb|ETL81820.1| hypothetical protein L917_17929 [Phytophthora parasitica] >gi|568037437|gb|ETM35022.1| hypothetical protein L914_18015 [Phytophthora parasitica] >gi|568086242|gb|ETN01134.1| hypothetical protein PPTG_17559 [Phytophthora parasitica INRA-310] >gi|570969728|gb|ETP32847.1| hypothetical protein F442_18541 [Phytophthora parasitica P10297]) HSP 1 Score: 143.665 bits (361), Expect = 4.253e-39 Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 0
Query: 5 FGGVGGGGPFAAMGGMGGLRLPQVFDEEYNSYSFVFQDKAHLEGSDKIFLPPSALDTLARLHIDYPMLFQITCRASGKRTHCGVLEFSAAEGSCYLPYWMMQNLLLEEGGFLQV 118
FG G G PF G PQ FDE Y Y F DKAHLE DKI LPPSAL+TLARLHI+YPMLF++T + +HCGVLEFSA EGSCY+PYWMMQNL ++EGG L +
Sbjct: 6 FGFGGDGNPFGVQFNFGDF--PQRFDEHYRVYPVSFCDKAHLEDGDKILLPPSALETLARLHIEYPMLFKVTNEGVERSSHCGVLEFSAPEGSCYMPYWMMQNLFVKEGGILNI 117 The following BLAST results are available for this feature:
BLAST of EWM22542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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