rna8153, rna8153 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8153
Unique Name	rna8153
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2267
Alignment location	KK037247.1:706296..707995 +

Link to JBrowse

Properties


Property Name	Value
Product	Small-subunit processome, Utp11
Orig transcript id	gnl\|cribi\|Naga_101367g1.988.mrna
Orig protein id	gnl\|cribi\|Naga_101367g1.988
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:706296..707995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101367g1	gene7897	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8153	rna8153-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22544.1	cds8129	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:706296..707995+
coding sequence from alignment at KK037247.1:706296..707995+

mRNA sequence

>rna8153 ID=rna8153|Name=rna8153|organism=Nannochloropsis gaditana|type=mRNA|length=2267bp
AGACTGGAATTCTTGACATTGACCATGCGGGCTCTACACTCGGAAAGGGG
TACACGCCCTCCAGCACATTGAAAAGAAGGGGGCATCCATCGAAAGGCTT
CGTTTTCGGACTCGGATGCTCGTATTTTGGGAAATTATGCCGGCACTTTT
ATCATCGTTCAGCCAGGAGCTCAGCTATCTGTTACGAGCTGCGCTTTGTA
GCCCGTCGACTTTGACACCCTTCATTCATGATGGGTAAATTGACCACGTG
GCATTGGAGGAATGAGTGTTCGGCACAAAATCTGCTGAAATGTGCCCGCT
GATCAAAATGCTTGTTTTGCTGCTTTTGAGGGGCTTGTTCATGGGATGCG
GTGCCCTCTTTGCCGGCAGGTAGAGGAGTTGATGTTGTTGTACAACCTAC
GACATGGACTTGCTGAGTGCCACTTAAGAATGCCGCGTGGGTAGAGGATG
CTTGTATGAGATTAAGAAAACCAAGTGTCTGCTTAAAATGCGTAGCGTGT
TTTGGATATTTGTAAAGACACGCAGTTCGAGCGGAACTAATCCAAATAGT
CCACAACTTGGAAATCGCTTTAATCATCCCGAACATAATTTCAACGCACC
CCTACCCAACAATTTGATCTCTTTTCCGACCAATAAGTAGAGGTGAGAAC
ATGCCAATGGCATAAAAGAAATGCCATGCGCTTCCCCCGGACCCCGCCCC
GAGGGGCTCCGAGCTCCTGTCACCTTGCGCCTGTTGGTTGTCGCCTCCCC
CACCTTCGACACAGCCATGGCCCTGACGGCCTGGAAAGTCGTGCAAAATG
CATCCTGTGAACGTGCCAAGTCTCGGGTGCATACCTGGAGGTCGGTTTTC
ACTGCGTCCGGGAATGCTTCGTCCCGTGAAAGCAGGTGTGGCGCGGGCGA
GGAAGGGATGGATTTGGAAGACGGGATGGAGGTGGAAGATCCAAAATTCG
ACCTTTTGTTGCTCCTGGGGACGTTCGCGCATATGACACGGAGAAAGCGT
GGGTCTCTTGGCCCGCATACCGGGAGGAATGAGGCCGGTAGAATAAACAA
TGAAGGAGGGGACGGGGAGGATGAGGAGGAAGGGAGATGGGAGGAGGTGG
AGGAGGAGGAGGTCCCAGGCCGGCTCCCAGCCCTGAATACAGAGACCTGG
GTGGGTCAAGCGGCGGTGGAGGGGGATATGATCAATGTAGTAGCCTTGCT
GGAGAATGTGGTGTGTCGGGCCTGTGTGGTGCCTGACAGGCGGGACCGGG
CCAAGGGCGAGGGGGACGGCGCGGGAAGAACGAATCGCGGGAGGGGAGGA
AGGGAGGAGAAGGAGGTGTTGACGTCGACGGCATTGAACGTGCATGATGG
CTGCGTCAAGCTGTCGACAGATTTGTATTTGGGCGGTTATGCGTACGAGG
GAGGGAGGGAGGGGGGGCGGGAGGGAGGGAGGGAGGAAGAAGAGGAGGTG
CTGGCACGGACGCTGCGCGCGGCAGCACATTTGGTGGAGGAGGAGGGTGA
GGAAGGGAGGAATGGGCCGTGGAGAATGATGATGATGGAGTACCTTCCGG
AGACGATGGCCTCCCCCTGTAGCCCGCCCTCCCTCCCCGCCTCTGCCCCC
TCCTCCCTCCCTTCCCCGTCAATACCGGAGGACGTGTCGCCGCGCGTCCT
GCTCCGGATACGGCGCCGAGAAGGTGTGGGGAAAGGAAACGTGGAGGAGG
CAGGAGGCACGACCATTGTGGAACCGGGGGCCTTGGCGGACGGTCACTTC
GCGGTGGTGACGCTGGGTCGAGGCGGGAGGGAGGGAGGCCGGGAGGGAGG
GAGGGAGGGAGGGTGGATGGTGAGAAAGGTAGAGTTGGAGAGATTGCCGT
CATTTCGCGTAGGGGCGGGCGAGAATCAGGCCGCAGGGAAGGGCGTGGCA
TAAGGGGAGGGCGGGCGGGCGGGAGGAAAAATATGGCGCGAAAAGCGGGG
GGGGATGAGCGAAAAAATGGCGCGAAAAGTCAAGGCGGCCGGCCGCGGCT
CCGAGGGCGCGAGGAGTGAAGGATGTCGAGGCCCCCAAAGTGCTTGAGAG
GCGGGGATGTGGGGGCATTGCGGTGATAAATTGTACTCTATGACGCCCGG
GGGAAAAGGATGAAAATAAAGGAGAGGCATACGCCACCGAGTCGATGCGG
ATGACACCAAAGCCGTGGAGACGCATGTTGTCGAAGCCAGGGCACGGCCC
ATTTCAAGGCCGTCGACCACAGGCACGCCGTCCATCACTGGCGTCACTCT
CCCGAACCCTCGCTTCC

protein sequence of rna8153

>rna8153-protein ID=rna8153-protein|Name=rna8153|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKAL
ASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQD
MRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLL
PSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLL
SRRPPRPSLPPPRMLAFPSPPAIAS

mRNA from alignment at KK037247.1:706296..707995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8153 ID=rna8153|Name=rna8153|organism=Nannochloropsis gaditana|type=mRNA|length=1700bp|location=Sequence derived from alignment at KK037247.1:706296..707995+ (Nannochloropsis gaditana)
AACGATGGGAAACTAGTGCGAAGAGCACCTCTTGTTCAGGAACTTTTTCA
AACCGGTTACAGGTGGCTatcgttttttttcctgctttctATACGCACCA
GCACGGGGGGTTGGCTTGAGCAGGTTGTCCGAGTGGGAGGGGACTTTCAC
TGGACGTTATTTAAGACGCACACTTTCCTCATTCGTCTGGTTCTCATGTG
TCCATTTATTGTACAGTCTTTCAGGTGCTGGCTGGTCTTGGGACTGGGGA
CATCGCCTGGTGTTTGGCCCTAAAAGACAGCCGTATACCCCTCCTTACCC
TAGAAGCCGCTCGTGCACCCGGCCATCCCCCCCTGCACTTATTTTAgtgc
tccttctctcttggACCACCCATTGCTTACAAGCAGCTTACTGAATCTTA
CACCATGCCGTACGCCTCGCTTCGGAACGCGATTCCACGCAAAACCAACA
AGGAACGGAGCCAGCCTGCCGCCCGCAAGAAATTTGTGAGTATCTTCGTC
ATACCCAGTCCCAAAACTTTCCGCAAAGTGGCAAGGCAGGGCTGTCTGAC
CTTAAGTTGAGTGAAAATGACGTCAACGTATGCTTTTTCTTGACTTTtgt
ttcccttcttccatggGGGGGGCACCCACGCCGCTTTTTTGGGTGTGCTC
TCTTTCCGTCCAGGGCCTTTTGGAGAAGCACAAGGACTACGTCCAGCGCG
CGAATGACTACAAAAGGAAGACCAAAGCCTTGGCTTCGCttcgggagaag
gcggcgttCCGAAACCCCGACGAATTTTATTTCGCCATGACCAAGGGGCA
AACGAAAGGTAGGGCCACGAGAGAAGGCAATTTCCGATGCGAATATTTGG
AGGACATAGTCGGGAACGAAAGGGGCTCTCATTCGCAGACGGAGTGAAAG
CAGGATAGGCAAGCGGGAAACGCGGCGCAGACGGACGACTTCATTCCTCT
GGCTTCATAAATTTCTTTGTTTTCCATGCAGAGGGTGTCCATCGTGTCCG
ACCCGccgaggcctccctcccccacgaccaCATCGCGCTGTTGAAGACCC
AGGACATGCGCTACGTGAACATGAAGCGAGCACTGGACGTGAAGGTacgg
ggaagagagggaattCGTCGGGGCAAGGGTgtggaagggtggagggtggc
aggggagggagggaaagagggcgtcgCCTGACCGGGTTTCTTTCCCGCGT
CCCACCCACCTCACAGAAAGCGGAGAAGCTCCAAGCCGGCCTGCATTTTC
TCaccgaggaggcggccaacAAGCACACTGTCTTCGTGGACACGGaggtg
cctccctcccttcctccctcccttcttccttcctcccttccgttcCTCCC
ACTTGCTCTACCTCCCACCcggcttcttctttcttttcccgcttTGCAAA
CGACATACATTCATTTGGTGACTGATTCATTTTATCGTCATCCCACTTCT
CGGTGTTTtcatgtctccttcctcctttctcgaaGGCCGCCACGACcatc
gcttccccccccccgaatGCTAGCATTTCCTTCGCCCCCGGCCATTGCAT
CATAGGATAATTACAcacacatacacacacacacacataggcggaggcag
agacCTTTGACCCCGCCAAGCACTTCGGGACCGACCCCGCGCTCGTCACG
AGGGCCTTCAACAGACCGAAATTGGAGACGTTggaggtaggggggaggga

Coding sequence (CDS) from alignment at KK037247.1:706296..707995+

>rna8153 ID=rna8153|Name=rna8153|organism=Nannochloropsis gaditana|type=CDS|length=2712bp|location=Sequence derived from alignment at KK037247.1:706296..707995+ (Nannochloropsis gaditana)
ATGCCGTACGCCTCGCTTCGGAACGCGATTCCACGCAAAACCAACAAGGA
ACGGAGCCAGCCTGCCGCCCGCAAGAAATTTGGCCTTTTGGAGAAGCACA
AGGACTACGTCCAGCGCGCGAATGACTACAAAAGGAAGACCAAAGCCTTG
GCTTCGCttcgggagaaggcggcgttCCGAAACCCCGACGAATTTTATTT
CGCCATGACCAAGGGGCAAACGAAAGAGGGTGTCCATCGTGTCCGACCCG
ccgaggcctccctcccccacgaccaCATCGCGCTGTTGAAGACCCAGGAC
ATGCGCTACGTGAACATGAAGCGAGCACTGGACGTGAAGAAAGCGGAGAA
GCTCCAAGCCGGCCTGCATTTTCTCaccgaggaggcggccaacAAGCACA
CTGTCTTCGTGGACACGGaggtgcctccctcccttcctccctcccttctt
ccttcctcccttccgttcCTCCCACTTGCTCTACCTCCCACCcggcttct
tctttcttttcccgcttTGCAAACGACATACATTCATTTGGTGACTGATT
CATTTTATCGTCATCCCACTTCTCGGTGTTTtcatgtctccttcctcctt
tctcgaaGGCCGCCACGACcatcgcttccccccccccgaatGCTAGCATT
TCCTTCGCCCCCGGCCATTGCATCATAGATGCCGTACGCCTCGCTTCGGA
ACGCGATTCCACGCAAAACCAACAAGGAACGGAGCCAGCCTGCCGCCCGC
AAGAAATTTGGCCTTTTGGAGAAGCACAAGGACTACGTCCAGCGCGCGAA
TGACTACAAAAGGAAGACCAAAGCCTTGGCTTCGCttcgggagaaggcgg
cgttCCGAAACCCCGACGAATTTTATTTCGCCATGACCAAGGGGCAAACG
AAAGAGGGTGTCCATCGTGTCCGACCCGccgaggcctccctcccccacga
ccaCATCGCGCTGTTGAAGACCCAGGACATGCGCTACGTGAACATGAAGC
GAGCACTGGACGTGAAGAAAGCGGAGAAGCTCCAAGCCGGCCTGCATTTT
CTCaccgaggaggcggccaacAAGCACACTGTCTTCGTGGACACGGaggt
gcctccctcccttcctccctcccttcttccttcctcccttccgttcCTCC
CACTTGCTCTACCTCCCACCcggcttcttctttcttttcccgcttTGCAA
ACGACATACATTCATTTGGTGACTGATTCATTTTATCGTCATCCCACTTC
TCGGTGTTTtcatgtctccttcctcctttctcgaaGGCCGCCACGACcat
cgcttccccccccccgaatGCTAGCATTTCCTTCGCCCCCGGCCATTGCA
TCATAGATGCCGTACGCCTCGCTTCGGAACGCGATTCCACGCAAAACCAA
CAAGGAACGGAGCCAGCCTGCCGCCCGCAAGAAATTTGGCCTTTTGGAGA
AGCACAAGGACTACGTCCAGCGCGCGAATGACTACAAAAGGAAGACCAAA
GCCTTGGCTTCGCttcgggagaaggcggcgttCCGAAACCCCGACGAATT
TTATTTCGCCATGACCAAGGGGCAAACGAAAGAGGGTGTCCATCGTGTCC
GACCCGccgaggcctccctcccccacgaccaCATCGCGCTGTTGAAGACC
CAGGACATGCGCTACGTGAACATGAAGCGAGCACTGGACGTGAAGAAAGC
GGAGAAGCTCCAAGCCGGCCTGCATTTTCTCaccgaggaggcggccaacA
AGCACACTGTCTTCGTGGACACGGaggtgcctccctcccttcctccctcc
cttcttccttcctcccttccgttcCTCCCACTTGCTCTACCTCCCACCcg
gcttcttctttcttttcccgcttTGCAAACGACATACATTCATTTGGTGA
CTGATTCATTTTATCGTCATCCCACTTCTCGGTGTTTtcatgtctccttc
ctcctttctcgaaGGCCGCCACGACcatcgcttccccccccccgaatGCT
AGCATTTCCTTCGCCCCCGGCCATTGCATCATAGATGCCGTACGCCTCGC
TTCGGAACGCGATTCCACGCAAAACCAACAAGGAACGGAGCCAGCCTGCC
GCCCGCAAGAAATTTGGCCTTTTGGAGAAGCACAAGGACTACGTCCAGCG
CGCGAATGACTACAAAAGGAAGACCAAAGCCTTGGCTTCGCttcgggaga
aggcggcgttCCGAAACCCCGACGAATTTTATTTCGCCATGACCAAGGGG
CAAACGAAAGAGGGTGTCCATCGTGTCCGACCCGccgaggcctccctccc
ccacgaccaCATCGCGCTGTTGAAGACCCAGGACATGCGCTACGTGAACA
TGAAGCGAGCACTGGACGTGAAGAAAGCGGAGAAGCTCCAAGCCGGCCTG
CATTTTCTCaccgaggaggcggccaacAAGCACACTGTCTTCGTGGACAC
GGaggtgcctccctcccttcctccctcccttcttccttcctcccttccgt
tcCTCCCACTTGCTCTACCTCCCACCcggcttcttctttcttttcccgct
tTGCAAACGACATACATTCATTTGGTGACTGATTCATTTTATCGTCATCC
CACTTCTCGGTGTTTtcatgtctccttcctcctttctcgaaGGCCGCCAC
GACcatcgcttccccccccccgaatGCTAGCATTTCCTTCGCCCCCGGCC
ATTGCATCATAG

Synonyms

Publications