EWM22544.1, cds8129 (CDS) Nannochloropsis gaditana

Overview
NameEWM22544.1
Unique Namecds8129
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:706700..706780 +
Alignment locationKK037247.1:706959..707103 +
Alignment locationKK037247.1:707277..707389 +
Alignment locationKK037247.1:707512..707850 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22544.1
ProductSmall-subunit processome, Utp11
Orig transcript idgnl|cribi|Naga_101367g1.988.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:706700..706780 +
KK037247.1supercontigKK037247.1:706959..707103 +
KK037247.1supercontigKK037247.1:707277..707389 +
KK037247.1supercontigKK037247.1:707512..707850 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0032040small-subunit processome
Vocabulary: INTERPRO
TermDefinition
IPR007144SSU_processome_Utp11
Homology
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|585103080|gb|EWM22544.1| (Small-subunit processome, Utp11 [Nannochloropsis gaditana])

HSP 1 Score: 452.21 bits (1162), Expect = 1.131e-160
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS 225
            MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS
Sbjct:    1 MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS 225          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|551678922|ref|XP_005842213.1| (hypothetical protein GUITHDRAFT_99014 [Guillardia theta CCMP2712] >gi|428186383|gb|EKX55233.1| hypothetical protein GUITHDRAFT_99014 [Guillardia theta CCMP2712])

HSP 1 Score: 163.31 bits (412), Expect = 8.394e-47
Identity = 85/145 (58.62%), Postives = 102/145 (70.34%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAA----NKHTVFVDTEVPPS 144
            +S RNA+ RKT+KER+QPAAR KFGLLEKHKDYVQRA D+ RK   L  LREKAAFRNPDEFYF M    TK GVH+V   + SL  D I LLK+QDM YV MK   + +K +KL+  LH L+  AA    NKHT+F+D++  P 
Sbjct:    2 SSFRNAVKRKTHKERAQPAARAKFGLLEKHKDYVQRARDFHRKQGQLKILREKAAFRNPDEFYFKMQSSSTKRGVHQV-NRDNSLDDDTIKLLKSQDMNYVKMKLQTEKRKLDKLEGDLHCLSAMAAIPKQNKHTIFLDSDEEPE 145          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|145347952|ref|XP_001418423.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144578652|gb|ABO96716.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 153.295 bits (386), Expect = 2.287e-42
Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
            +SLRNA+ RKT+KERSQ + RK+FGLLEK KDYV RA DY +K  A+ +L+ KAA+RNPDEFYFAM K +T +GVH  R  E +    + + ++KTQD++YV MK A++ KK EK++  LH +      KHTVFVDTE
Sbjct:    3 SSLRNAVKRKTHKERSQLSERKRFGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKAKTDDGVHVARSTEQNKYTEEELRVMKTQDVKYVQMKAAIEGKKVEKMKRNLHGIGVPVKRKHTVFVDTE 140          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|159470695|ref|XP_001693492.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158282995|gb|EDP08746.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 150.984 bits (380), Expect = 3.315e-42
Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = 0
Query:    5 SLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFL--TEEAANKHTVFVDT 139
            +L NAI RKT+KER+QPAARKK+GLLEKHKDYVQRA ++ +K K L +L+ KA  RNPDEFYFAM K +TK+GVH  R  +A+    + +AL+++QD++Y++MK   D  KA++L+  LHF+  T  +  +HTVFVD+
Sbjct:    3 ALANAIKRKTHKERAQPAARKKYGLLEKHKDYVQRARNFHKKEKTLQALKRKAEERNPDEFYFAMEKARTKDGVHEGRLTQANKYSQEELALMRSQDVKYLSMKATSDANKAQRLKESLHFIGVTNTSPQRHTVFVDS 140          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|693499488|emb|CEF98302.1| (Small-subunit processome, Utp11 [Ostreococcus tauri] >gi|1199293446|gb|OUS48530.1| small-subunit processome [Ostreococcus tauri])

HSP 1 Score: 152.91 bits (385), Expect = 3.834e-42
Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
            +SLRNA+ RKT+KER+QP+ RK++GLLEK KDYV RA DY +K  A+ +L+ KAA+RNPDEFYFAM K +T++GVH  R  E +    + + ++KTQD++YV +K  ++ K+ EKL+  LH +   A  KHTVFVDTE
Sbjct:    3 SSLRNAVKRKTHKERAQPSERKRYGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKTKTEDGVHVARTTEQNKYTEEELRVMKTQDVKYVQLKAGVEAKRVEKLKRNLHSIGAPAKRKHTVFVDTE 140          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|308804950|ref|XP_003079787.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 152.91 bits (385), Expect = 1.224e-41
Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
            +SLRNA+ RKT+KER+QP+ RK++GLLEK KDYV RA DY +K  A+ +L+ KAA+RNPDEFYFAM K +T++GVH  R  E +    + + ++KTQD++YV +K  ++ K+ EKL+  LH +   A  KHTVFVDTE
Sbjct:   59 SSLRNAVKRKTHKERAQPSERKRYGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKTKTEDGVHVARTTEQNKYTEEELRVMKTQDVKYVQLKAGVEAKRVEKLKRNLHSIGAPAKRKHTVFVDTE 196          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|325192525|emb|CCA26957.1| (U3 small nucleolar RNAassociated protein putative [Albugo laibachii Nc14])

HSP 1 Score: 149.828 bits (377), Expect = 3.396e-41
Identity = 75/138 (54.35%), Postives = 98/138 (71.01%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
            +SLRN + R+ +KER Q   RK+ GLLEKHKDYV RA DY  K K L S++ KAAFRNPDEFYF M   +T+EGVH      A  L  + + +LKTQD+ Y+ MKR++D+ KAEKL+ GLHF+   A N+HT++VDT+
Sbjct:    2 SSLRNVVKRREHKERGQLHERKRLGLLEKHKDYVLRARDYHNKQKRLRSMQLKAAFRNPDEFYFKMHSSRTEEGVHVSTNNHADQLSAEALQILKTQDLAYLQMKRSVDLSKAEKLRKGLHFVGAPAMNQHTIYVDTD 139          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|116781583|gb|ABK22165.1| (unknown [Picea sitchensis])

HSP 1 Score: 148.673 bits (374), Expect = 5.090e-41
Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFV-DTEVPPSLPPSLLPSSLP-FLPLALP 162
            +SLRNA+ R+T+KER+QPAAR KFGLLEKHKDYV RA DY +K + +  LREKAA RNPDEFYF M   +T +GVHR +        + + L+KTQD++YV  K   + KKAE+LQ+ LH +    +N+HT F  D E    L   +L S      P  LP
Sbjct:    2 SSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEKKAIFPAKLP 162          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|148907168|gb|ABR16727.1| (unknown [Picea sitchensis])

HSP 1 Score: 148.673 bits (374), Expect = 5.549e-41
Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFV-DTEVPPSLPPSLLPSSLP-FLPLALP 162
            +SLRNA+ R+T+KER+QPAAR KFGLLEKHKDYV RA DY +K + +  LREKAA RNPDEFYF M   +T +GVHR +        + + L+KTQD++YV  K   + KKAE+LQ+ LH +    +N+HT F  D E    L   +L S      P  LP
Sbjct:    2 SSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEEKAIFPAKLP 162          
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|1183494929|gb|ORZ18591.1| (small-subunit processome [Absidia repens])

HSP 1 Score: 148.673 bits (374), Expect = 1.070e-40
Identity = 76/143 (53.15%), Postives = 93/143 (65.03%), Query Frame = 0
Query:    5 SLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAA-------NKHTVFVDTE 140
            SLRN + R+ +KER Q A+R+K GLLEK KDY+QRA DY  K K L +LREKA FRNPDEFYF M   QTK GVH ++     LP + + L+K+QD  Y+  +R +  KK EKLQ  LHFL E          NKH VFVD+E
Sbjct:    4 SLRNVVQRRNHKERGQLASREKLGLLEKKKDYLQRARDYHGKQKRLKALREKALFRNPDEFYFKMINSQTKNGVH-IQKRNEELPDEMVQLMKSQDKNYIKFQRDVSKKKMEKLQESLHFLDEGEQDHTPTKRNKHVVFVDSE 145          
The following BLAST results are available for this feature:
BLAST of EWM22544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103080|gb|EWM22544.1|1.131e-160100.00Small-subunit processome, Utp11 [Nannochloropsis g... [more]
gi|551678922|ref|XP_005842213.1|8.394e-4758.62hypothetical protein GUITHDRAFT_99014 [Guillardia ... [more]
gi|145347952|ref|XP_001418423.1|2.287e-4255.07predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|159470695|ref|XP_001693492.1|3.315e-4254.35predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|693499488|emb|CEF98302.1|3.834e-4253.62Small-subunit processome, Utp11 [Ostreococcus taur... [more]
gi|308804950|ref|XP_003079787.1|1.224e-4153.62unnamed protein product [Ostreococcus tauri][more]
gi|325192525|emb|CCA26957.1|3.396e-4154.35U3 small nucleolar RNAassociated protein putative ... [more]
gi|116781583|gb|ABK22165.1|5.090e-4149.69unknown [Picea sitchensis][more]
gi|148907168|gb|ABR16727.1|5.549e-4149.69unknown [Picea sitchensis][more]
gi|1183494929|gb|ORZ18591.1|1.070e-4053.15small-subunit processome [Absidia repens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8153rna8153Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications