EWM22544.1, cds8129 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|585103080|gb|EWM22544.1| (Small-subunit processome, Utp11 [Nannochloropsis gaditana]) HSP 1 Score: 452.21 bits (1162), Expect = 1.131e-160 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query: 1 MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS 225
MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS
Sbjct: 1 MPYASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEVPPSLPPSLLPSSLPFLPLALPPTRLLLSFPALQTTYIHLVTDSFYRHPTSRCFHVSFLLSRRPPRPSLPPPRMLAFPSPPAIAS 225
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|551678922|ref|XP_005842213.1| (hypothetical protein GUITHDRAFT_99014 [Guillardia theta CCMP2712] >gi|428186383|gb|EKX55233.1| hypothetical protein GUITHDRAFT_99014 [Guillardia theta CCMP2712]) HSP 1 Score: 163.31 bits (412), Expect = 8.394e-47 Identity = 85/145 (58.62%), Postives = 102/145 (70.34%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAA----NKHTVFVDTEVPPS 144
+S RNA+ RKT+KER+QPAAR KFGLLEKHKDYVQRA D+ RK L LREKAAFRNPDEFYF M TK GVH+V + SL D I LLK+QDM YV MK + +K +KL+ LH L+ AA NKHT+F+D++ P
Sbjct: 2 SSFRNAVKRKTHKERAQPAARAKFGLLEKHKDYVQRARDFHRKQGQLKILREKAAFRNPDEFYFKMQSSSTKRGVHQV-NRDNSLDDDTIKLLKSQDMNYVKMKLQTEKRKLDKLEGDLHCLSAMAAIPKQNKHTIFLDSDEEPE 145
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|145347952|ref|XP_001418423.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144578652|gb|ABO96716.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 153.295 bits (386), Expect = 2.287e-42 Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
+SLRNA+ RKT+KERSQ + RK+FGLLEK KDYV RA DY +K A+ +L+ KAA+RNPDEFYFAM K +T +GVH R E + + + ++KTQD++YV MK A++ KK EK++ LH + KHTVFVDTE
Sbjct: 3 SSLRNAVKRKTHKERSQLSERKRFGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKAKTDDGVHVARSTEQNKYTEEELRVMKTQDVKYVQMKAAIEGKKVEKMKRNLHGIGVPVKRKHTVFVDTE 140
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|159470695|ref|XP_001693492.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158282995|gb|EDP08746.1| predicted protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 150.984 bits (380), Expect = 3.315e-42 Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = 0
Query: 5 SLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFL--TEEAANKHTVFVDT 139
+L NAI RKT+KER+QPAARKK+GLLEKHKDYVQRA ++ +K K L +L+ KA RNPDEFYFAM K +TK+GVH R +A+ + +AL+++QD++Y++MK D KA++L+ LHF+ T + +HTVFVD+
Sbjct: 3 ALANAIKRKTHKERAQPAARKKYGLLEKHKDYVQRARNFHKKEKTLQALKRKAEERNPDEFYFAMEKARTKDGVHEGRLTQANKYSQEELALMRSQDVKYLSMKATSDANKAQRLKESLHFIGVTNTSPQRHTVFVDS 140
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|693499488|emb|CEF98302.1| (Small-subunit processome, Utp11 [Ostreococcus tauri] >gi|1199293446|gb|OUS48530.1| small-subunit processome [Ostreococcus tauri]) HSP 1 Score: 152.91 bits (385), Expect = 3.834e-42 Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
+SLRNA+ RKT+KER+QP+ RK++GLLEK KDYV RA DY +K A+ +L+ KAA+RNPDEFYFAM K +T++GVH R E + + + ++KTQD++YV +K ++ K+ EKL+ LH + A KHTVFVDTE
Sbjct: 3 SSLRNAVKRKTHKERAQPSERKRYGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKTKTEDGVHVARTTEQNKYTEEELRVMKTQDVKYVQLKAGVEAKRVEKLKRNLHSIGAPAKRKHTVFVDTE 140
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|308804950|ref|XP_003079787.1| (unnamed protein product [Ostreococcus tauri]) HSP 1 Score: 152.91 bits (385), Expect = 1.224e-41 Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
+SLRNA+ RKT+KER+QP+ RK++GLLEK KDYV RA DY +K A+ +L+ KAA+RNPDEFYFAM K +T++GVH R E + + + ++KTQD++YV +K ++ K+ EKL+ LH + A KHTVFVDTE
Sbjct: 59 SSLRNAVKRKTHKERAQPSERKRYGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKTKTEDGVHVARTTEQNKYTEEELRVMKTQDVKYVQLKAGVEAKRVEKLKRNLHSIGAPAKRKHTVFVDTE 196
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|325192525|emb|CCA26957.1| (U3 small nucleolar RNAassociated protein putative [Albugo laibachii Nc14]) HSP 1 Score: 149.828 bits (377), Expect = 3.396e-41 Identity = 75/138 (54.35%), Postives = 98/138 (71.01%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEAS-LPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTE 140
+SLRN + R+ +KER Q RK+ GLLEKHKDYV RA DY K K L S++ KAAFRNPDEFYF M +T+EGVH A L + + +LKTQD+ Y+ MKR++D+ KAEKL+ GLHF+ A N+HT++VDT+
Sbjct: 2 SSLRNVVKRREHKERGQLHERKRLGLLEKHKDYVLRARDYHNKQKRLRSMQLKAAFRNPDEFYFKMHSSRTEEGVHVSTNNHADQLSAEALQILKTQDLAYLQMKRSVDLSKAEKLRKGLHFVGAPAMNQHTIYVDTD 139
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|116781583|gb|ABK22165.1| (unknown [Picea sitchensis]) HSP 1 Score: 148.673 bits (374), Expect = 5.090e-41 Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFV-DTEVPPSLPPSLLPSSLP-FLPLALP 162
+SLRNA+ R+T+KER+QPAAR KFGLLEKHKDYV RA DY +K + + LREKAA RNPDEFYF M +T +GVHR + + + L+KTQD++YV K + KKAE+LQ+ LH + +N+HT F D E L +L S P LP
Sbjct: 2 SSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEKKAIFPAKLP 162
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|148907168|gb|ABR16727.1| (unknown [Picea sitchensis]) HSP 1 Score: 148.673 bits (374), Expect = 5.549e-41 Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAANKHTVFV-DTEVPPSLPPSLLPSSLP-FLPLALP 162
+SLRNA+ R+T+KER+QPAAR KFGLLEKHKDYV RA DY +K + + LREKAA RNPDEFYF M +T +GVHR + + + L+KTQD++YV K + KKAE+LQ+ LH + +N+HT F D E L +L S P LP
Sbjct: 2 SSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEEKAIFPAKLP 162
BLAST of EWM22544.1 vs. NCBI_GenBank
Match: gi|1183494929|gb|ORZ18591.1| (small-subunit processome [Absidia repens]) HSP 1 Score: 148.673 bits (374), Expect = 1.070e-40 Identity = 76/143 (53.15%), Postives = 93/143 (65.03%), Query Frame = 0
Query: 5 SLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKTKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVNMKRALDVKKAEKLQAGLHFLTEEAA-------NKHTVFVDTE 140
SLRN + R+ +KER Q A+R+K GLLEK KDY+QRA DY K K L +LREKA FRNPDEFYF M QTK GVH ++ LP + + L+K+QD Y+ +R + KK EKLQ LHFL E NKH VFVD+E
Sbjct: 4 SLRNVVQRRNHKERGQLASREKLGLLEKKKDYLQRARDYHGKQKRLKALREKALFRNPDEFYFKMINSQTKNGVH-IQKRNEELPDEMVQLMKSQDKNYIKFQRDVSKKKMEKLQESLHFLDEGEQDHTPTKRNKHVVFVDSE 145 The following BLAST results are available for this feature:
BLAST of EWM22544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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