rna8151, rna8151 (mRNA) Nannochloropsis gaditana

Overview
Namerna8151
Unique Namerna8151
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2215
Alignment locationKK037247.1:698532..700322 -

Link to JBrowse

Properties
Property NameValue
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_101704g1.10036.mrna
Orig protein idgnl|cribi|Naga_101704g1.10036
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:698532..700322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101704g1gene7895Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22546.1cds8127Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8151rna8151-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8151 ID=rna8151|Name=rna8151|organism=Nannochloropsis gaditana|type=mRNA|length=2215bp
GGGGGCCCCATGCCGGCGGACGAGGATGACTACGACAACCGGGGCGGGGG
CGGGAGGATGCGGTACGAAGCGACCTCCAACACCACCGTGGCCCCTGCCG
CTGTCTCCAGCGCCGCGCAGCCCCCCGCCTTGACCTCGGTCGAAGCCGCC
GCCGTCTACAAAGTCCGGGTACCGAGTTATACGGATCGGATCTGGCTCCA
CTCCCTCCCCGACGTGGCGAACGCCTTGTCCTTCCAATCCTACGAGTTGT
GCGATGCCTTGTGGGAAAGCGACCACCGGCCCGTCTCCGCCGTCCTCCAC
CTCGACCTCCGCCCCGCCCTCAACTTGCACCGCGCTTACCTCCAGGCGTA
CACGCCCCGCGCCCCTCTCTTACCCCTCCCTCCCCGGTCCCCGACGGCCA
TGATGAAGAATAAGGTCTCCTCCTTCTTCAACGGGACCAGCCACACGGGG
GGAATCGGCGGGAGCGACATGGTCAAGAAAGGCTTGCGGAGGAGCGAGGG
CAGCCAAGGAGGGAACCGGTCCACGCCCTCGAACCGGAGACTGGACGTGG
AAACAGCGGCCGCAGCGGCGGTAAAGGCCATCGCTGGCTACCCTACCACC
CAGCCATCCACCCCGTCCTCCGCGCCAGCCCTTCTCCAGCCGGCGCCAGC
CCAGGCCGGGGAGGGAGGGCACCCGGGGGTCCGGCATGGGCGGGGGCGGC
TTTTAAGCTCCCCTACACGCAGCGGAAAGTCGGGCGGTTGGCCGTGCTGT
TCCCCTTGCCCAGCGAGAACCAACTCGAGCATACGCACCGGACCTTGGAG
TACTTGGACGCGACCATCTGCCACGAATGGTCCACGTGGAGCCGAGAACG
GAAAGGGCTGTTGAAGAGCACGAGCCACCACGAATGGCGCCAGGCCACTT
CCGAGGAAGGGATCATGGTCTCGGCGGCTATCAAGATAGGTGGGTCCTTG
CACACCCTCCTGAAGCTCATCGACGTGAACGGGGGGGAGCTCGCCGAGGC
CGTGCTGGCCTTGCCCCGGCCGGGAGGAGGGGGGGGAGGGACCGGGGGAG
GGATGGGGGGCAAGGGGAGGAAGAAACGAGTGACGGCAAGCCTGACGAAA
CACACAGCTTACCGAGGGACCTTGTGCTGCGACGTCGAAGTGGTCAAGGT
GAAGATCCAGCGGGAAGCCTCGGAGGGAGGGAAGAAGGGAGGGAAGCGGG
GAAAGCGGGAGGAGAGTCTGCCTGCGACGGTGCCGCCCACCTCGGGGCCG
GGTACGCCCGTGAGGGAGGAAGGTGTGGCCGGGAAGAAGGGAAGGAAGAA
GGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGCGAAAAGGGGA
GCGGCTCGCGCTTCGACTGGGAGAGCGGGATGGTCGTCGAGGACGAAAAG
GCATGTGCGCCTCCCTCTGGTTTTTCCTCCCCTCCCCCGGTCCCTCTACC
GCTACCTCCTCCTCCCCTTCCTCCGTGCCCTCCATCGTCTCGAGTGGAGC
AGGTGTCGTCGCTTTCCCCTCCTTCATCGACTTCAGCTCCTCTTCCTCCT
CTTCCTCCTCCTCCTCCATCTCTGTCTCCTCTTCCCCCCCCTCTTCCTCC
TCCTTCTCCTCCTCCTCCTTTCTCTCACCCCAGTCCATCTTCTGCCTTCC
CTGCTGCTCTTCCCCCCCCTCGCCCTCCAAGTCCCGCACCCTTCCAACCC
CTTTCCTCTTCTCCCTCCCGCCCTCCTCCCTCTCCGCCCCCTCCTGCAGA
GCATGGAGGAGGGAAGACGTACTAAAAACAAAATGTCAGGAGACAGAAGG
GCAGAATCGACAAAATTTCCTTTCAAAGGCGCGGCGGCATGAAAACGGAA
GGCGAAAGACGAAGGTGTTTGAGGGAGGCGAAGGCAGGAGGGCTGCGAAA
CAACATAGTTAAAAGTAGGAACTTAAAGGAGTGGAGTGAAAAAGTAGGAT
TGTTCGGAAAAGAAGAAGGGATTATAAGAATCGAAGAGGAGTCGCTCCAT
CTGTTCTAAGGGACGGAAAGGGGAATAAATATCACCGACAGCTGCTCACT
CTTACTAAAGAATATACATACTTGTAAAGTGCACTCCTGTGGGCATGGCT
GATATTGCTGGAACGCAAGAAATTGATATTAAAGGTATTTTTCTTTAAGG
ATAAATGTAACAAGACGTCAGCATTAAAGATTCACGGCGAGGAGAGTAAT
GGCAAAAGCTACAAC
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protein sequence of rna8151

>rna8151-protein ID=rna8151-protein|Name=rna8151|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MEEGRRGSRYLNLNSNLNFMNGKGQVCKEGAGQGNGKKQEGRAAGGGGTG
EGIWEVEMGKEGGEERGGGTVGTSTCLTSMAKEFLGTASALAPKPAAGAA
TDVSGRGRTNGPGFVGHAGFSAAEKHRGDGDGTEEEEYRAKGRAPSLPAQ
ASLSTSSSLCLPAPGRRHARPPPLRAASSNALLSPALPPALPPPTPPLTA
SIFVSTYNCGSLPPSALSSSLPSPSFLHAWIPLHHHLYIIGVQELKGLQA
LKQLLHTHLGGPAAFQMYGQEISVVGNGTALAERLGAIALLVYARTEDVE
RGVFEMTAVPKAGGQQVLQGKNLLVCRAGNKGAVCLPFRYHQSTLVVAAA
HLPADGSRRSKVEKRNANLR
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mRNA from alignment at KK037247.1:698532..700322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8151 ID=rna8151|Name=rna8151|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp|location=Sequence derived from alignment at KK037247.1:698532..700322- (Nannochloropsis gaditana)
TCCCTCAGGTCTACCGGCGCGTGGTCATCACGCCCAAAAAAGGCTCCTCC
CACTCGGTCCGTCAGGCCGCCGCCCGCCTGCGCGTAGGCCGGAAGCTCAT
GCTTTACCTCCTCTGTTTCCTCGGCACCTGGACCTTCCCTATGATCAACC
GGACCGTGCAGATGGGCGGGCACACCAATCCTTTCCTCCTCTTCCTCCAC
GTACGTGTGTCGGGCCCGCACGCCCTCCCTCCCACCCTGGTCTTTTGGCT
CTTCGTGTACCTCCCCTCCCTCCCCCGCGACTCCCCTTGCCCTCCCTCCC
TCCCTCCTCCCCTCCCTCCCTCCCTTCCCATGCTTCCCAGGTTTCTCATC
TATTTCACCCCTTCTTGTCCCGCTAATGCGTACAGGTCATCTCCAAACCC
TCCATGGGCTTGTGGGACTCCCTCGTCTACGGGTCGGTAACCGCCGTTTT
GAGCAGCCGTTTAAAAATGGGAAAATACGGGCGAAAGAAGGGGGCAGGGC
CCTCCCTCGAGAGCGTGGACTTGGACCAGCCGGTGGAGGAAGAGGAGGGC
GGGGGGAGGGCGGGTTCAAGGGGGAAGTGGAAGGGAAGGACGTTGACGAG
GACGACATTGTCTGGTTGGACAAGGAGGAGGATGGCGGGGAGGAAGAGTG
GAAGGAGGCAGGCAGGAGGGAGAAGGCGATGGAGGAAGGGCGCCGGGGGA
GCAGGTATTTGAATTTGAATTCAAATTTGAATTTTATGAACGGGAAAGGA
CAGGTGTGCAAGGAAGGGGCTGGCCAGGGAAACGGGAAGAAGCAGGAAGG
GCGGGCCGCAGGTGGGGGAGGCACCGGAGAAGGAATCTGGGAAGTGGAGA
TGGGGAAGGAAGGCGGGGAAGAGAGGGGGGGCGGTACCGTGGGGACAAGC
ACCTGCTTGACCTCCATGGCGAAGGAGTTTCTCGGCACCGCAAGCGCCCT
GGCTCCGAAACCGGCGGCAGGGGCAGCCACAGACGTGTCGGGGAGAGGGA
GGACCAACGGCCCGGGCTTTGTCGGGCATGCCGGTTTCTCCGCCGCCGAA
AAGCACCGAGGAGACGGCGACGGCACCGAAGAAGAGGAGTACAGGGCCAA
AGGCCGTGCACCCTCCCTCCCGGCCCAGGCCTCCCTGTCCACCTCCTCCT
CCCTGTGCCTTCCCGCCCCCGGCCGTCGCCATGCGCGACCCCCACCTCTG
CGGGCTGCTTCCTCCAACGCCCTCCTGTCCCCCGCCCTCCCCCCCGCCCT
CCCGCCCCCCACCCCACCCCTCACGGCCAGCATCTTCGTTTCCACCTACA
ACTGCGGCTCCCTTCCCCCCTCTGCCCTTTCCTCGTCCCTTCCTTCCCCC
TCCTTCCTCCACGCCTGGATACCTCTCCACCACCACCTCTACATCATCGG
TGTTCAGGAATTGAAGGGTTTGCAAGCCCTTAAACAGCTTTTGCACACAC
ATTTGGGAGGTCCCGCCGCTTTCCAAATGTATGGACAGGAGATCAGTGTG
GTGGGAAACGGCACGGCGTTGGCCGAACGCTTGGGGGCGATCGCCCTCCT
GGTGTACGCCAGGACGGAGGACGTGGAACGCGGCGTCTTCGAAATGACAG
CGGTGCCCAAGGCGGGGGGGCAGCAGGTGTTGCAGGGGAAAAACCTTCTC
GTGTGCCGCGCGGGGAACAAGGGGGCGGTCTGCCTCCCCTTCCGCTACCA
TCAGTCCACTCTGGTCGTGGCTGCTGCCCACCTGCCCGCCGACGGCTCTC
GGCGGAGTAAGGTGGAGAAGCGGAACGCGAATCTGAGGTAG
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Coding sequence (CDS) from alignment at KK037247.1:698532..700322-

>rna8151 ID=rna8151|Name=rna8151|organism=Nannochloropsis gaditana|type=CDS|length=1113bp|location=Sequence derived from alignment at KK037247.1:698532..700322- (Nannochloropsis gaditana)
ATGGAGGAAGGGCGCCGGGGGAGCAGGTATTTGAATTTGAATTCAAATTT
GAATTTTATGAACGGGAAAGGACAGGTGTGCAAGGAAGGGGCTGGCCAGG
GAAACGGGAAGAAGCAGGAAGGGCGGGCCGCAGGTGGGGGAGGCACCGGA
GAAGGAATCTGGGAAGTGGAGATGGGGAAGGAAGGCGGGGAAGAGAGGGG
GGGCGGTACCGTGGGGACAAGCACCTGCTTGACCTCCATGGCGAAGGAGT
TTCTCGGCACCGCAAGCGCCCTGGCTCCGAAACCGGCGGCAGGGGCAGCC
ACAGACGTGTCGGGGAGAGGGAGGACCAACGGCCCGGGCTTTGTCGGGCA
TGCCGGTTTCTCCGCCGCCGAAAAGCACCGAGGAGACGGCGACGGCACCG
AAGAAGAGGAGTACAGGGCCAAAGGCCGTGCACCCTCCCTCCCGGCCCAG
GCCTCCCTGTCCACCTCCTCCTCCCTGTGCCTTCCCGCCCCCGGCCGTCG
CCATGCGCGACCCCCACCTCTGCGGGCTGCTTCCTCCAACGCCCTCCTGT
CCCCCGCCCTCCCCCCCGCCCTCCCGCCCCCCACCCCACCCCTCACGGCC
AGCATCTTCGTTTCCACCTACAACTGCGGCTCCCTTCCCCCCTCTGCCCT
TTCCTCGTCCCTTCCTTCCCCCTCCTTCCTCCACGCCTGGATACCTCTCC
ACCACCACCTCTACATCATCGGTGTTCAGGAATTGAAGGGTTTGCAAGCC
CTTAAACAGCTTTTGCACACACATTTGGGAGGTCCCGCCGCTTTCCAAAT
GTATGGACAGGAGATCAGTGTGGTGGGAAACGGCACGGCGTTGGCCGAAC
GCTTGGGGGCGATCGCCCTCCTGGTGTACGCCAGGACGGAGGACGTGGAA
CGCGGCGTCTTCGAAATGACAGCGGTGCCCAAGGCGGGGGGGCAGCAGGT
GTTGCAGGGGAAAAACCTTCTCGTGTGCCGCGCGGGGAACAAGGGGGCGG
TCTGCCTCCCCTTCCGCTACCATCAGTCCACTCTGGTCGTGGCTGCTGCC
CACCTGCCCGCCGACGGCTCTCGGCGGAGTAAGGTGGAGAAGCGGAACGC
GAATCTGAGGTAG
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Synonyms
Publications