rna8148, rna8148 (mRNA) Nannochloropsis gaditana

Overview
Namerna8148
Unique Namerna8148
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1414
Alignment locationKK037247.1:685009..686728 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100378g3.10076.mrna
Orig protein idgnl|cribi|Naga_100378g3.10076
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:685009..686728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100378g3gene7892Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8148rna8148-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22548.1cds8124Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8148 ID=rna8148|Name=rna8148|organism=Nannochloropsis gaditana|type=mRNA|length=1414bp
CATTTCTTTTCCCAGATACATCAGCTTCCATACCCACATACATGAGTGGG
TATCAAGGGAAGGAAAAAGAGCGGCGGAGGGTGGAAGAGGAACCTCCCAC
TAGCGGCATCGACGGAGGAGATGTTTCCACCCTTTTGTACGTCTCGCGCG
CAATGTCTCCACCCCTTCCGCTTTCAACATAATGTATGCATCAAACACTC
ACGCCAAAACCCCATTTGCGCTGCACCGCACAGTCCTCCCTTCTCCCCTC
CTCCCCTTCCCCCTCCGCCCAGAGGCTTTGTGCAAGCGACGTCCGCTTCA
CGCGATCCTCTATCTCCTGTCCTCGCAACCCCTCCCCCGCCTCCTGTGAA
GCCCACGTATGCCGTTCCACCGCCTCCGCCCCCCCCGTTGAGCTCGTCGA
GCCCTTCGCTTGTATTCCACGACCCTTTATCATCAGTCTTGGCCCCTCCA
GCACGCTCTTTCCCCTCCCCTCCTCCTCCCCCTCCTCCTCCCCCCTCTGT
CTTTCCACCTCCTCGTCCACCACCACCCCCTCGACCATGGCAGCAGTATC
CTCCACCTCCACCTCCAGGGCGCCCCTCCTCTTCTTCAGTGGTGCACAGC
ACCCAAGAAATAACCCAACAAAGGCAGCAATTATCCTCCCCTACGTCCTC
TTCCCCAGCCCCTGACTTCTCCTTCCCTCCCCCCCTTCGCGATCCGCAAT
CTCCATCGTCTTACTCCTCCCTTCCTTCTTCATCCTCGCCGTCATCACAT
CAAAGCCCACCTCAATGGCCGCTATCGCATGCTCCTCCTCCCCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCGC
CTTCCCACTCCCGCACGTCCACCTTTCCTAGACCCCCGTCTCCCCTCTTC
TCCGCCGCTCCTTCCCCGTCTTCCCCTCCCTCCATCCGCATCAGTCACCT
CACCGACCACTTCCTCGCCGAGAGCAGCGGCGTCCTCCCTCATCCCGAAG
GTTTTCGCTCCCGCCGAGGCTTGGTCGCACTCTGTCGGATGCGGGCCTGG
AAGACAGTTTTGGAGGTGACGGACCGATTGACGGGAGGGGAAGGGGAGAA
CGGGAGGGAGGGCGGGGAGGAGGAAGAGGTGGAAAGCATGATGGACGTGG
TCACCTCCTCCTTCTTGGCTTTGCGAGGCTTGGGGAGGAGGCAGGCGGTG
AAGGCAAGATTGGAAAGGATGAGGGGAGAGGCGCCACTCCCTTTCCTTCT
CCTGGCCGCGGACGCCTGGGTCTGGCTGGGAGAGGAGGAGAAGGCGTGCG
ATGTCTTGTACCGGATGCAGCGCCGAGTCCAACAAGAGCTGCTGGGAGGG
AAGACAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGCGGGCTTCGGGGA
ACCGACGCGGGGGG
back to top

protein sequence of rna8148

>rna8148-protein ID=rna8148-protein|Name=rna8148|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MAQVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQ
GHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRN
FQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPS
PEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNL
SYFYDLVGDKYVPVL
back to top

mRNA from alignment at KK037247.1:685009..686728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8148 ID=rna8148|Name=rna8148|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp|location=Sequence derived from alignment at KK037247.1:685009..686728+ (Nannochloropsis gaditana)
GAAACGCTCTCACCTGTCTGGACGGCATCCGTCGGTCGCTCTCCCGggcc
gtggaaggggaggaagggagggaaggagggaaagagggagggaaggaggg
cgaggaagagagacTGTGTCTGCACATGGCACAGGTGGAAGTCTTGCAGC
GGATCGGCCGGGTCTTCTTGCAGGTGGGCAACGTCCAGGAAGCTCGGCGT
TTTTGGAACCACGCGGAGATTTTGGTGCTCAAAGCCAAGAGCTGCGCCCT
TAGCGCGCAGCAGTTCTCCTCCCAGGGCCATGAGGAGCAAGCAatgcctg
ccttccctcccccccgacctccctcccgccctccctactTCCTCGGTTGG
GCCGAGTCCCAGGTGGGCATGGGGAAAGGGCTCTTAGCCGTGGCAGAAGG
CCGGTGGGAGGACGCGCAAAGAAACTTCCAGAAGGTCGCGGCGGCTGAGA
GGACCCGATTACTCGAGTGAGTGGGGCGTAGGGAGTGGGGAAGAGGCATA
AAAGCCGGAAGGAACttcaggaggggaggcagagggtaCATTTTCTCTCC
ACGCAGACTTACATCCGGGTCGGTTTTCCCAATACGTCCGTGACAGAGAC
CCCTTCGTTTTCGACCCagcgctctctccctcccccggttCCTCGGGCCC
CAccgcgcctcccttcctctccccctcgccttggccgtccctcctccttc
cctccccagagGAcaacctccttcttcccgccatCATCAACCTAGCAGTC
CTCTCCTTGCATCGTGGCAACGTGCACGCGGCCATCCACATATTGGAAAA
CTTCATCCGGGAAGACCCTCCCCGGAACATGACCGAGAACCTGGTGCTCA
ACCTCTCCTATTTCTACGACCTGGTCGGCGATAAGTACGTGCCCGTCCTT
TGatattttccctcttctgccctcccttcccgcccccccccctggggGCT
TCCTCGTGTGGCGTATGTCTGTTTGGAAAGAGAATCAACGAAGAATttag
ggaggaggtgcgtctttcctttttcaattTTCTCGCTATCAAGCCTCTGA
ATTCCGCtttggaaaggaaaaacATGTACGAAACAAATCTTTGTGCGAAG
TAAGAGTTAAAGGCTTGTATTTTTCTCCCctacccttcttccctctctga
ACAGAGCGAGCCGCGACGAAAAAATGAAAGTGCTTGAGGCTGTGGCCCGC
CGCTTTCGATTGGACGACATCGAGGCACGATTTTTCAGCTAGGTGTctgg
gtggagagggggctCCTGAAGAGAAATTCTTCGAAAGAATTGCGGGAGAC
AGCTGTTCAGCATCTGTTGCCTCGCACGCCCGATAGATTTTGCATGTTTT
GGATAGCCAGAGTAACTCGGTTCTGATAAGAGAATTTCCGTCTCATATTT
GACAGAGTTTGGCAAACGCTGGAGTTCTTGTTGTTTTTCTTTCATCTTTG
TCAGAATTCTCTCCCAATATGCAAGTCCTATATGCAGACCTTTCTCTCAA
TAAATTACTCGTGACCTTGAACAGTGGGGCTTCTTCCATTGCATTGGTCA
TTCTGGCAGCGAGGCTTCTCGTATTCCATGTTCATTTGGAAGACAGCATA
AGGGTTGCTCATGCGCACGTTTCATCGAAAGGCAATTATAGGTTTGTGAC
CGATATGTAAAGAGGGACGAACCCGATGCCACCTTCGTTTCTCGCATTAA
AATGTAAATCTGTGGTTGAT
back to top

Coding sequence (CDS) from alignment at KK037247.1:685009..686728+

>rna8148 ID=rna8148|Name=rna8148|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037247.1:685009..686728+ (Nannochloropsis gaditana)
ATGGCACAGGTGGAAGTCTTGCAGCGGATCGGCCGGGTCTTCTTGCAGGT
GGGCAACGTCCAGGAAGCTCGGCGTTTTTGGAACCACGCGGAGATTTTGG
TGCTCAAAGCCAAGAGCTGCGCCCTTAGCGCGCAGCAGTTCTCCTCCCAG
GGCCATGAGGAGCAAGCAatgcctgccttccctcccccccgacctccctc
ccgccctccctactTCCTCGGTTGGGCCGAGTCCCAGGTGGGCATGGGGA
AAGGGCTCTTAGCCGTGGCAGAAGGCCGGTGGGAGGACGCGCAAAGAAAC
TTCCAGAAGGTCGCGGCGGCTGAGAGGACCCGATTACTCGAAGACCCCTT
CGTTTTCGACCCagcgctctctccctcccccggttCCTCGGGCCCCAccg
cgcctcccttcctctccccctcgccttggccgtccctcctccttccctcc
ccagagGAcaacctccttcttcccgccatCATCAACCTAGCAGTCCTCTC
CTTGCATCGTGGCAACGTGCACGCGGCCATCCACATATTGGAAAACTTCA
TCCGGGAAGACCCTCCCCGGAACATGACCGAGAACCTGGTGCTCAACCTC
TCCTATTTCTACGACCTGGTCGGCGATAAGTACGTGCCCGTCCTTTGaAT
GGCACAGGTGGAAGTCTTGCAGCGGATCGGCCGGGTCTTCTTGCAGGTGG
GCAACGTCCAGGAAGCTCGGCGTTTTTGGAACCACGCGGAGATTTTGGTG
CTCAAAGCCAAGAGCTGCGCCCTTAGCGCGCAGCAGTTCTCCTCCCAGGG
CCATGAGGAGCAAGCAatgcctgccttccctcccccccgacctccctccc
gccctccctactTCCTCGGTTGGGCCGAGTCCCAGGTGGGCATGGGGAAA
GGGCTCTTAGCCGTGGCAGAAGGCCGGTGGGAGGACGCGCAAAGAAACTT
CCAGAAGGTCGCGGCGGCTGAGAGGACCCGATTACTCGAAGACCCCTTCG
TTTTCGACCCagcgctctctccctcccccggttCCTCGGGCCCCAccgcg
cctcccttcctctccccctcgccttggccgtccctcctccttccctcccc
agagGAcaacctccttcttcccgccatCATCAACCTAGCAGTCCTCTCCT
TGCATCGTGGCAACGTGCACGCGGCCATCCACATATTGGAAAACTTCATC
CGGGAAGACCCTCCCCGGAACATGACCGAGAACCTGGTGCTCAACCTCTC
CTATTTCTACGACCTGGTCGGCGATAAGTACGTGCCCGTCCTTTGa
back to top
Synonyms
Publications