EWM22548.1, cds8124 (CDS) Nannochloropsis gaditana

Overview
NameEWM22548.1
Unique Namecds8124
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:685134..685474 +
Alignment locationKK037247.1:685605..685911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22548.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100378g3.10076.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:685134..685474 +
KK037247.1supercontigKK037247.1:685605..685911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM22548.1 vs. NCBI_GenBank
Match: gi|585103088|gb|EWM22548.1| (hypothetical protein Naga_100378g3 [Nannochloropsis gaditana])

HSP 1 Score: 434.876 bits (1117), Expect = 3.647e-154
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MAQVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGDKYVPVL 215
            MAQVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGDKYVPVL
Sbjct:    1 MAQVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGDKYVPVL 215          
BLAST of EWM22548.1 vs. NCBI_GenBank
Match: gi|1210512558|dbj|GAX28415.1| (hypothetical protein FisN_4Hh394 [Fistulifera solaris])

HSP 1 Score: 75.0998 bits (183), Expect = 2.949e-12
Identity = 56/207 (27.05%), Postives = 95/207 (45.89%), Query Frame = 0
Query:    3 QVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGD 209
            + E+L + GRVFLQ+G   EAR+ ++ A     +  +   S  + + Q      +P  P                + + +  GLL  +EG++ +A   F+      R R+          +  +  SS       L P P  +    +PED L   AI N+++ +L+  N+H AI ++E+ IREDP + +TE + LNL   Y+L  +
Sbjct:  352 RCEILSQQGRVFLQLGATNEARQIFDMA-----RDAATHGSVAEETMQVMRHSLVPFVP----------------AHMSLNDGLLKFSEGQYNEALECFRHCVDLIRQRI---------EMKSAVASSNSFDMKALIPMPTGA----APEDALYSEAINNMSLCALYTCNLHEAILLMESLIREDPIKFLTERVCLNLCILYELSNE 524          
BLAST of EWM22548.1 vs. NCBI_GenBank
Match: gi|1210521978|dbj|GAX19413.1| (hypothetical protein FisN_4Lh394 [Fistulifera solaris])

HSP 1 Score: 74.7146 bits (182), Expect = 4.611e-12
Identity = 52/207 (25.12%), Postives = 95/207 (45.89%), Query Frame = 0
Query:    3 QVEVLQRIGRVFLQVGNVQEARRFWNHAEILVLKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGD 209
            + E+L + GR+FLQ+G   EAR+ ++ A     +  +  +S  + + Q      +P  P                + + +  GLL  +EG++ +A   F+        R+          +  +  S   +    L P P  +    +PE+ L   AI N+++ +L+  N+H AI ++E+ IREDP + +TE + LNL   Y+L  +
Sbjct:  352 RCEILSQQGRIFLQLGATHEARQIFDMA-----RDAATHVSVTEETVQLMRHSIVPFIP----------------AHISLNNGLLKFSEGQYNEALECFRHCVDLISQRI---------EMKSAVASLNSSEVKVLIPMPTGA----APEEALYSEAINNMSLCALYTCNLHEAILLMESLIREDPTKFLTERVCLNLCILYELSNE 524          
The following BLAST results are available for this feature:
BLAST of EWM22548.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103088|gb|EWM22548.1|3.647e-154100.00hypothetical protein Naga_100378g3 [Nannochloropsi... [more]
gi|1210512558|dbj|GAX28415.1|2.949e-1227.05hypothetical protein FisN_4Hh394 [Fistulifera sola... [more]
gi|1210521978|dbj|GAX19413.1|4.611e-1225.12hypothetical protein FisN_4Lh394 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8148rna8148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications