rna8146, rna8146 (mRNA) Nannochloropsis gaditana

Overview
Namerna8146
Unique Namerna8146
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1437
Alignment locationKK037247.1:681585..683363 -

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Properties
Property NameValue
Productsmall nucleolar ribonucleoprotein complex subunit
Orig transcript idgnl|cribi|Naga_101173g2.3224.mrna
Orig protein idgnl|cribi|Naga_101173g2.3224
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:681585..683363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101173g2gene7890Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22550.1cds8122Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8146rna8146-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8146 ID=rna8146|Name=rna8146|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp
CACGCTGCCGACGTGCTGGCTGTGGCCTTCCGCCCGGACGGGAAGGAGCT
TTGCGTGGCCACTCTGAACGGGCTTTTGACGTGCTGGGACGTGGCGGAGG
GACACGAAATCCGGGTACTGGACGGCAAGCGGGACTTGCAGGGGGGGCGG
GGTCACTATGACAAGATTTCTGCCTCCGCCGCTGCCGCCGCCAAACATTT
TACCTCCCTTGCCTACACGGCTGATGGCTCGTGTCTCTTGGCGGGGGGGC
GGAGCAAGTTCCTGTGCATCTACCACCTGGAAACTAAGGCGCTCGTGCGG
AAATTTCAACTCAGCCACGACCGCTCCTTGGATGGGGTGGTGGACAAATT
GCATTCGGGCAAAGTGGGCTCGGACGGGCTGCCGTTGCTGGGGGAGGACG
CGGGAGAGGACTCGGGGGAGGACGGGGGGGAGGACGAGGCCTTGCCAGGA
GCCAAACGTGGAGTGGACGGCTCGAAACGAAGGCTCCGGGCCGAAGTCCG
GGTATCCTGCGTGCGCTTCTCCCCGACAGGCAGGGAATGGGCCGCCGCCA
CCCCGCAAGGTTTGTTGGTGTTCGGCTTGGAGGAAGACATGCAGTTCAAC
CCGATGGAATTGGACGTGGCTGCAACACCCGCAGCGGTCAGAGAGAAGAT
TCGGGAGGGACAGGTGGGCATGGCCTTGGTGATGGCAGGTCAACTGAACG
AAGAGAGCGTCCTGCTCGAGGCCCTTGACGCTGCCCCCCCCGGTTGGGAG
AATCTGCTCCTCCTCACCCAGGCCCTCCCTCCCTCCCTCGCTCCTCGCCT
CCTTGCCCTCGTGGCGAAGCACCTTCCCCGCTCGCCCCACCTCTCGTTCC
TGCTTTCTTTCTCCCTCGCGCTTCTGCACACCCACGGGAAGGTCTTGCGC
CAGGACCCGGCCAAGCACGCACCGCATCTGCGGGCAATGCAACGGGCGAT
TTTGAAATTTCAAGAAGACGTTGGGAAGCATGTGGATTCCTCCACGGCGT
TGCTGAACCTCTTGATGGCCGGGGAGGGCGGGAGGGAGGAATGGAAGGAG
GACGGGGAGGGAAAAACATAAGGGGGAAGAAGCGGTGGATGAAAAAAAAA
TGCGGGGAACTAGAGAAAATGGTTCGTACATATAGACAGGAAGTTGAGCT
AAGCATACAAATCCACATTTGAAAGCAACTTCGGGATTCCGGTCAGAAGA
CAATCTTGAAGTCTTTCCTCTCATCCTTCCTTCGCCCCCCCAATCATGCA
TAAGCTGAGGCTGCCTCGGTTCTCACCCTGAAAAGCTCCAGAGTTGCGCC
TGGTTTCCACCATGGGCTTACCCATCCATCGCCTTGTGCCATGTCCAACA
TTTTGGACCGGATCGAACCTCTCTCCTTCCCCCTCATGATCCATCCCGGG
CCTCGCACGCCCCCACACGACGCCGTCTCCCACCCCG
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protein sequence of rna8146

>rna8146-protein ID=rna8146-protein|Name=rna8146|organism=Nannochloropsis gaditana|type=polypeptide|length=511bp
MRFGYRPSRLLGAVHSGGNVVFSPDGNTLYSPVTNRVVVFDLIRHVSTML
PYEHAYPIRRVAVSPNGRFLLTVDTGGYLFLGHVSRGIILCRMRLKRPNK
VRDLVFSPDGQFFAVTQDRQFQVWRTPGAAREFAPFVLHRTFGSHGDEIL
SLAWAPCGQYLLTGSKDLTVRIWSLHPLPPAVFTPATLSGHRDRIVGAFF
SASGPVEARDPPLLSDGGAGSPPSLPPSLPPPSTPKGPDTVWTSPRSSPL
SSLRIYSIARDGFLYAWVIDPSTQTWKCHDRHAFQKSRRAHVVSVCYHAI
SSPLPAAAATAPSPGTALLVVGFSDGVFGLYDLPTGAVVHTLSVSSGQIG
TVALNLTGEWLALGCAPLGQLLVWEWQSETYVLKQQGHAQAVNAVAYSPD
GQVMATGGEDAKVKLWSTASGFSFVTFTAHDAPVTALAFLGSGQAVLSAS
LDGTVRAHDLLRYRNFRTLTTPAPTQLLSLAVDPSGEVVCAGSSEPFEVG
RGRRREGGWEG
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mRNA from alignment at KK037247.1:681585..683363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8146 ID=rna8146|Name=rna8146|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp|location=Sequence derived from alignment at KK037247.1:681585..683363- (Nannochloropsis gaditana)
ACCCGTTGAAGCACTGCCACCGTGGCCACACAACCGCACGTATGAAGGAG
ACATTTATGTTTTGAAATACACACAGACGTCTACAGGTTCGCAACAGCCC
GGCGAAAAAGGTTCATGAACGTGGAGACCGCATCCGCAAACTAAATATCT
TCGTCCTGCCCCCCAGGACCCCCAACACTACCGACCTCCTCCCGTCTATT
TCGTCTCTGCCTCCTTAGGGAAAAAAAGGAAACCCGTGCTGAAAGGATGC
GTTTCGGATACCGCCCGTCCCGTCTTTTGGGAGCGGTGCATTCCGGGGGA
AATGTTGTGTTTTCCCCGGACGGCAACACGTTGTACAGCCCGGTAACCAA
TCGCGTGGTTGTCTTCGACCTAATACGGCATGTGTCCACCATGCTCCCGT
ACGAGCACGCCTACCCCATCCGTCGCGTCGCAGTCTCCCCCAACGGACGT
TTCTTGCTCACGGTCGACACAGGCGGCTACCTTTTCCTTGGCCATGTGTC
GCGTGGCATAATCTTGTGTCGGATGCGACTCAAGCGTCCCAATAAGGTAC
GAGACCTGGTTTTCTCGCCGGATGGGCAGTTTTTCGCCGTCACCCAGGAC
CGTCAATTCCAAGTGTGGCGCACGCCGGGTGCAGCCCGGGAATTCGCTCC
TTTTGTGTTGCACCGGACGTTTGGGTCACATGGCGACGAGATATTGAGCC
TGGCTTGGGCCCCCTGTGGGCAGTATCTGCTTACTGGGTCCAAGGATTTG
ACCGTGAGAATTTGGAGCCTCCACCCTCTGCCTCCGGCGGTCTTCACGCC
CGCCACCCTATCGGGCCACCGGGATCGGATCGTCGGCGCCTTCTTTAGTG
CGTCTGGCCCCGTGGAAGCCCGGGACCCTCCCCTCCTGTCCGACGGAGGT
GCGGGCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCATCCACTCC
CAAAGGGCCCGACACCGTCTGGACCTCCCCCCGGTCCTCGCCCCTCTCCT
CCCTCCGCATCTACTCCATCGCCCGCGACGGCTTCCTCTACGCGTGGGTG
ATCGACCCCAGCACCCAGACCTGGAAATGCCACGACCGGCACGCCTTTCA
AAAATCCCGGCGGGCCCATGTGGTGTCTGTGTGTTACCATGCCATCTCCT
CCCCGCTCCCCGCCGCCGCCGCCACGGCCCCCTCCCCCGGCACCGCCCTC
CTGGTCGTGGGGTTCTCCGACGGCGTCTTCGGCCTCTACGACCTCCCGAC
CGGCGCCGTGGTCCACACCCTGTCCGTCTCATCGGGACAGATCGGAACGG
TCGCCCTGAATTTGACCGGGGAATGGCTGGCCTTGGGTTGTGCTCCCCTG
GGCCAGCTGTTGGTGTGGGAGTGGCAGTCGGAGACCTACGTGTTGAAGCA
ACAAGGACACGCTCAGGCGGTGAACGCGGTCGCCTACTCCCCCGACGGAC
AAGTGATGGCCACGGGGGGGGAGGACGCCAAAGTCAAGCTCTGGTCGACT
GCCTCTGGCTTCAGTTTCGTCACCTTCACGGCCCATGACGCCCCTGTCAC
TGCTCTGGCCTTCCTGGGCTCGGGGCAGGCGGTCTTGTCGGCCTCCTTGG
ACGGCACGGTTCGGGCGCACGATTTGTTGCGGTACCGGAACTTTCGCACG
TTGACCACCCCCGCCCCGACCCAACTCCTCTCCTTGGCCGTCGATCCCAG
CGGGGAGGTGGTTTGTGCGGGGTCGAGCGAGCCGTTTGAGGTGGGGAGGG
GCCGAAGGAGGGAGGGAGGGTGGGAGGGA
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Coding sequence (CDS) from alignment at KK037247.1:681585..683363-

>rna8146 ID=rna8146|Name=rna8146|organism=Nannochloropsis gaditana|type=CDS|length=1533bp|location=Sequence derived from alignment at KK037247.1:681585..683363- (Nannochloropsis gaditana)
ATGCGTTTCGGATACCGCCCGTCCCGTCTTTTGGGAGCGGTGCATTCCGG
GGGAAATGTTGTGTTTTCCCCGGACGGCAACACGTTGTACAGCCCGGTAA
CCAATCGCGTGGTTGTCTTCGACCTAATACGGCATGTGTCCACCATGCTC
CCGTACGAGCACGCCTACCCCATCCGTCGCGTCGCAGTCTCCCCCAACGG
ACGTTTCTTGCTCACGGTCGACACAGGCGGCTACCTTTTCCTTGGCCATG
TGTCGCGTGGCATAATCTTGTGTCGGATGCGACTCAAGCGTCCCAATAAG
GTACGAGACCTGGTTTTCTCGCCGGATGGGCAGTTTTTCGCCGTCACCCA
GGACCGTCAATTCCAAGTGTGGCGCACGCCGGGTGCAGCCCGGGAATTCG
CTCCTTTTGTGTTGCACCGGACGTTTGGGTCACATGGCGACGAGATATTG
AGCCTGGCTTGGGCCCCCTGTGGGCAGTATCTGCTTACTGGGTCCAAGGA
TTTGACCGTGAGAATTTGGAGCCTCCACCCTCTGCCTCCGGCGGTCTTCA
CGCCCGCCACCCTATCGGGCCACCGGGATCGGATCGTCGGCGCCTTCTTT
AGTGCGTCTGGCCCCGTGGAAGCCCGGGACCCTCCCCTCCTGTCCGACGG
AGGTGCGGGCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCATCCA
CTCCCAAAGGGCCCGACACCGTCTGGACCTCCCCCCGGTCCTCGCCCCTC
TCCTCCCTCCGCATCTACTCCATCGCCCGCGACGGCTTCCTCTACGCGTG
GGTGATCGACCCCAGCACCCAGACCTGGAAATGCCACGACCGGCACGCCT
TTCAAAAATCCCGGCGGGCCCATGTGGTGTCTGTGTGTTACCATGCCATC
TCCTCCCCGCTCCCCGCCGCCGCCGCCACGGCCCCCTCCCCCGGCACCGC
CCTCCTGGTCGTGGGGTTCTCCGACGGCGTCTTCGGCCTCTACGACCTCC
CGACCGGCGCCGTGGTCCACACCCTGTCCGTCTCATCGGGACAGATCGGA
ACGGTCGCCCTGAATTTGACCGGGGAATGGCTGGCCTTGGGTTGTGCTCC
CCTGGGCCAGCTGTTGGTGTGGGAGTGGCAGTCGGAGACCTACGTGTTGA
AGCAACAAGGACACGCTCAGGCGGTGAACGCGGTCGCCTACTCCCCCGAC
GGACAAGTGATGGCCACGGGGGGGGAGGACGCCAAAGTCAAGCTCTGGTC
GACTGCCTCTGGCTTCAGTTTCGTCACCTTCACGGCCCATGACGCCCCTG
TCACTGCTCTGGCCTTCCTGGGCTCGGGGCAGGCGGTCTTGTCGGCCTCC
TTGGACGGCACGGTTCGGGCGCACGATTTGTTGCGGTACCGGAACTTTCG
CACGTTGACCACCCCCGCCCCGACCCAACTCCTCTCCTTGGCCGTCGATC
CCAGCGGGGAGGTGGTTTGTGCGGGGTCGAGCGAGCCGTTTGAGGTGGGG
AGGGGCCGAAGGAGGGAGGGAGGGTGGGAGGGA
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Synonyms
Publications