rna8143, rna8143 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8143
Unique Name	rna8143
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1227
Alignment location	KK037247.1:675964..678192 +

Link to JBrowse

Properties


Property Name	Value
Product	Armadillo-like helical
Orig transcript id	gnl\|cribi\|Naga_100730g1.7797.mrna
Orig protein id	gnl\|cribi\|Naga_100730g1.7797
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:675964..678192 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100730g1	gene7887	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8143	rna8143-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22552.1	cds8119	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:675964..678192+
coding sequence from alignment at KK037247.1:675964..678192+

mRNA sequence

>rna8143 ID=rna8143|Name=rna8143|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp
ATGCCGGACAAAGGACCGTGCAAGCTTTCCTTTGGTGTTTCTGTCAAATT
TTCTCCATTCTTTGACAATTCGAATTCCACACACGCCTCGTCGTCGGCGG
GCAGATTTATTTTCCTGCAGGATTTCGGGATGGGCCACGCCATGCACCGA
GGAAGACGCCTCAGCACTCTCCTTCACCTTAGTCTCGCCTGCAGCTGGAT
ATTCATCGTGAAGGCAGTCATGGTAGATAATATCATCGATCACGCTTCCT
CGAAAAATAACACGGGTGGCGGGCGTCGTTTAAATGTGTTTGGATGGCCT
GACCGCAGACATATCTCCGACCGGGACACTTGGCCTGGGCGTGTTGTGGG
CAAGTTGGAGTTCCCAGACAGGCAATACTGCACTGCCACATTAGTAGGCC
CCTCTCTCATTCTTACGGCACGGCACTGTTTCGCGAATCTTCTGGACGAA
ATGGTGGCCTCCCGGATGGATGGACGCTTCCTCCTGGGCTATTCAGGGGG
TACCGTCTTGGCCTCCGCAGGCCTCCTCCATGTCTGGTATGGTCTCGATC
CCACGTCGGACTGGGCGATCGCGCGCATCGACCAGCCCCTGGGAAGGACC
TTCGGGCACATGGTGCCGACGTCCGCCGCGGTCACAGACATGCTCCCATT
GGAAAAGCAGTTCAGCATGGTCGCTTTCTCCCGGGACAAATTCGAATACC
GGGCCGGGACGGACCCGGTGTGCTCCCTCTTGTCTTTCCGAAAACAGGCT
CGGCTGATGGTCACGACCTGTTCGGGGGAGGCTGGCGCCTCGGGCGCGGC
CATCGCGGACGACAAGGGCGTGATCTACGGTGTGTTTGTGGCGGCCATTG
AACATGACGACATGCCGCAGGTGAAGGTGCTGGGGGACTTCGACCCCCGC
TTCCCTAACTTCGCCACGCCCGCCGAAGAGGTCTACCCTACCTGGTCCTG
GCTCATCACCCAGCCCTGCCTTGGTAACGCGGTATTTCCTTCCTCTCCTT
CCCGTCTCATCGTGCGGCGGCAACGATGCTCGGCTTCCTTCCTGGCTCAT
CAGCTTGGTCGTTTTCACGTCACTGGTGACGTCATGTCCTTCCCCGCCGA
TCACCCAGTCCTGGTGACACCTGTGGTGACGCTTCCTTCCTGGCTCATCA
GCTTGGTCGTTGTCACGTCACTGGTGACGTCATGTCCTTCCCCGCCCATC
ACCCAGTCCTGGCGACGCCTGTGGTGA

protein sequence of rna8143

>rna8143-protein ID=rna8143-protein|Name=rna8143|organism=Nannochloropsis gaditana|type=polypeptide|length=688bp
MHENLLLFLHSSEVAPRSSSFLVIKLHRRPRKSNAYSYHPYHALRGRVLT
WSNYLSFKPNSRTFLYGLMHSLWHSGGRSPMSSAGKSTGAGDSNQGPSPP
PQKDRDPSIPPRKHALERPVVDAAPIPRTASSPHRVSAAGSCTSTPPSGS
PRPPRRTPQESTFLTKPTASSLQKRRSIVLTHTLSPGGTSAFKTSSTLPP
SPPTLGGHGPRVPIPGPSPHEVTPSVSITSTVLPSPTPHALKGSTKTASP
TAMPAVTNTPVRGHQLPPLPSSSPGALPSLASPSRSILSAPISARRAYHR
KIDQHLPAGTDSPSTSSSLGTSPNTSVAPGRRKPGPPRPHATPSSSSLSS
SSSTATTKLVVMSAAEKAMDGAPQGRVYQVQVRNTEDLPPSLHPALDLDL
VLETVKEGDAALHGGQRGEEERGHADWAREYECIDAIRRLALHPSLGPAL
LRPHLPLLLPFLLRSVHNLRSSMQRNALLCLRELFVPAGLGPAFPPFLEP
MCALLLRQLGHGDKKFIRVACEGVLAAAVGAEGGATVPFLLPALLPMVKA
KKAEEAAGSLLWIEQGLKEVLKEGGADGGREGGRAEGGEESTLTRALGAL
SLTSPTPPRPSTPPSSPLPPALPSLLPPPRGERTDAARPPPRVGPRLRQL
SFGDRQESGEEGADSPEQVLGQGGGRAGGREKGGKFRV

mRNA from alignment at KK037247.1:675964..678192+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8143 ID=rna8143|Name=rna8143|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp|location=Sequence derived from alignment at KK037247.1:675964..678192+ (Nannochloropsis gaditana)
ATGCACGAAAATCTCCTGCTATTCCTTCACTCATCGGAAGTGGCTCCTCG
TTCATCCAGCTTTCTGGTTATTAAGCTGCACCGAAGGCCTCGCAAGTCAA
ATGCATACTCATATCACCCATACCACGCCCTCCGGGGAAGGGTGTTGACA
TGGTCAAACTACCTATCGTTCAAGCCGAACTCACGTACCTTTCTCTATGG
TCTCATGCACAGTCTGTGGCATTCTGGTGGTCGGTCACCCATGTCAAGTG
CTGGTAAAAGCACCGGGGCAGGGGACAGCAACCAGgggccttctccccct
ccccaaaaaGACCGTGATCCCAGCATTCCCCCCCGCAAACACGCCCTCGA
GCGACCCGTGGTGGATGCCGCTCCTATCCCACgcacggcctcttcccctc
atcGCGTTTCAGCCGCCGGGAGCTGtacctccacccctccctccggctct
ccccggcctccgcgtCGTACCCCCCAAGAGAGCACGTTCCTGACAAAACC
CACCGCCAGTAGCCTTCAAAAACGACGAAGCATCGTCCTCACCCACACCC
TGTCCCCTGGTGGCACCAGTGCTTTCAAAACCAGCagcactctccctcct
tcccctcccacgctggGTGGCCATGGCCCACGTGTCCCCATCCCCGGACC
TTCCCCCCATGAAGTcacgccctccgtctccatcacctccaccgTCCTAC
CTTCTCCAACACCCCACGCCCTCAAGGGCTCGACAAAGACCGCTTCACCC
ACCGCCATGCCTGCCGTCACCAACACTCCTGTCCGCGGCCATCaactgcc
cccccttccttcctcatcacccgGAGCCTTaccttccctcgcctcccctt
cccgctccatcctctccgcGCCTATCTCAGCACGACGGGCGTACCATCGC
AAAATCGACCAGCACCTCCCTGCAGGGACAgactcgccctccacctcttc
ctccctcggcacCTCCCCCAACACCTCCGTCGCTCCCGGACGCCGGAAGC
CGGGGCCCCCGAGACCCCATGCaaccccatcctcctcctccctctcctcc
tcctcctccaccgccaccaccaaaCTGGTCGTCATGTCGGCGGCCGAGAA
AGCCATGGATGGCGCCCCCCAAGGGCGCGTCTACCAGGTCCAGGTTCGAA
ACACGGAggacctccccccctccctccaccccgccctcgacctcgacctc
gtcctggagacggtgaaggaaggggacgccGCTCTGCACGGGGGACAacg
cggggaggaagagaggggccaCGCGGACTGGGCACGGGAATACGAGTGCA
TCGACGCCATCCGCCggctcgccctccatccctccctcggccccgccctc
cttcgaccccacctccccctcctcctccccttcctgctccgGTCCGTGCA
CAACCTGCGTTCGAGCATGCAACGGAACGCCTTGCTCTGCCTCCGTGAGC
TCTTCGTCCCGGCCGGCCTCgggcccgccttcccccccttcctcgagcCC
ATGTGCGCCCTCCTACTCCGCCAGCTCGGTCATGGGGACAAGAAGTTCAT
CCGGGTAGCCTGCGAAGGGGTCCTGGCCGCCGCGGTAGgcgccgaaggag
gggcgaccgtgcctttcctccttcccgccctcctccccatggtCAAGGCC
AAGAAAGCGGAAGAAGCCGCAGGCAGCTTGCTTTGGATCGAGCAGGGGCT
GAAGGAggtcttgaaggagggaggggccgatggagggagggagggcgggc
gagcggaagggggggaggagtcgaCCCTGACGCGGGCCCTCGGTGCCCtg
tccctcacctcccctacccccccccgcccatcgacacctccttcctcccc
cctcccccccgccctcccttccctcctccctccaccgagAGGGGAGCGGA
CTGAcgctgcccgccctcctcctcgcgttGGCCCACGGCTACGACAGCTG
TCGTTTGGCGACAGGCAAGAAAGCGGCGAAGAGGGCGCTGATTCTCCTGA
GCAGGTCCttggacagggaggagggcgagcgggagggcgagaaaagggcg
ggaagtTCCGCGTTTGAAACAGCCTTGCGGGCCACCGGGGTTTCTCGGGC
AGTGGCGGAGGACATTTTGAAGCACACGTCCGGGGAAAAGTCCGAGGGAG
CCCTCTCCGCCGTCTCGacgcctgcttcctccccccgcgcctcCTCTCGG
GCCTCGCTTCAGGGCGGTCTTCCCTCCGC

Coding sequence (CDS) from alignment at KK037247.1:675964..678192+

>rna8143 ID=rna8143|Name=rna8143|organism=Nannochloropsis gaditana|type=CDS|length=2067bp|location=Sequence derived from alignment at KK037247.1:675964..678192+ (Nannochloropsis gaditana)
ATGCACGAAAATCTCCTGCTATTCCTTCACTCATCGGAAGTGGCTCCTCG
TTCATCCAGCTTTCTGGTTATTAAGCTGCACCGAAGGCCTCGCAAGTCAA
ATGCATACTCATATCACCCATACCACGCCCTCCGGGGAAGGGTGTTGACA
TGGTCAAACTACCTATCGTTCAAGCCGAACTCACGTACCTTTCTCTATGG
TCTCATGCACAGTCTGTGGCATTCTGGTGGTCGGTCACCCATGTCAAGTG
CTGGTAAAAGCACCGGGGCAGGGGACAGCAACCAGgggccttctccccct
ccccaaaaaGACCGTGATCCCAGCATTCCCCCCCGCAAACACGCCCTCGA
GCGACCCGTGGTGGATGCCGCTCCTATCCCACgcacggcctcttcccctc
atcGCGTTTCAGCCGCCGGGAGCTGtacctccacccctccctccggctct
ccccggcctccgcgtCGTACCCCCCAAGAGAGCACGTTCCTGACAAAACC
CACCGCCAGTAGCCTTCAAAAACGACGAAGCATCGTCCTCACCCACACCC
TGTCCCCTGGTGGCACCAGTGCTTTCAAAACCAGCagcactctccctcct
tcccctcccacgctggGTGGCCATGGCCCACGTGTCCCCATCCCCGGACC
TTCCCCCCATGAAGTcacgccctccgtctccatcacctccaccgTCCTAC
CTTCTCCAACACCCCACGCCCTCAAGGGCTCGACAAAGACCGCTTCACCC
ACCGCCATGCCTGCCGTCACCAACACTCCTGTCCGCGGCCATCaactgcc
cccccttccttcctcatcacccgGAGCCTTaccttccctcgcctcccctt
cccgctccatcctctccgcGCCTATCTCAGCACGACGGGCGTACCATCGC
AAAATCGACCAGCACCTCCCTGCAGGGACAgactcgccctccacctcttc
ctccctcggcacCTCCCCCAACACCTCCGTCGCTCCCGGACGCCGGAAGC
CGGGGCCCCCGAGACCCCATGCaaccccatcctcctcctccctctcctcc
tcctcctccaccgccaccaccaaaCTGGTCGTCATGTCGGCGGCCGAGAA
AGCCATGGATGGCGCCCCCCAAGGGCGCGTCTACCAGGTCCAGGTTCGAA
ACACGGAggacctccccccctccctccaccccgccctcgacctcgacctc
gtcctggagacggtgaaggaaggggacgccGCTCTGCACGGGGGACAacg
cggggaggaagagaggggccaCGCGGACTGGGCACGGGAATACGAGTGCA
TCGACGCCATCCGCCggctcgccctccatccctccctcggccccgccctc
cttcgaccccacctccccctcctcctccccttcctgctccgGTCCGTGCA
CAACCTGCGTTCGAGCATGCAACGGAACGCCTTGCTCTGCCTCCGTGAGC
TCTTCGTCCCGGCCGGCCTCgggcccgccttcccccccttcctcgagcCC
ATGTGCGCCCTCCTACTCCGCCAGCTCGGTCATGGGGACAAGAAGTTCAT
CCGGGTAGCCTGCGAAGGGGTCCTGGCCGCCGCGGTAGgcgccgaaggag
gggcgaccgtgcctttcctccttcccgccctcctccccatggtCAAGGCC
AAGAAAGCGGAAGAAGCCGCAGGCAGCTTGCTTTGGATCGAGCAGGGGCT
GAAGGAggtcttgaaggagggaggggccgatggagggagggagggcgggc
gagcggaagggggggaggagtcgaCCCTGACGCGGGCCCTCGGTGCCCtg
tccctcacctcccctacccccccccgcccatcgacacctccttcctcccc
cctcccccccgccctcccttccctcctccctccaccgagAGGGGAGCGGA
CTGAcgctgcccgccctcctcctcgcgttGGCCCACGGCTACGACAGCTG
TCGTTTGGCGACAGGCAAGAAAGCGGCGAAGAGGGCGCTGATTCTCCTGA
GCAGGTCCttggacagggaggagggcgagcgggagggcgagaaaagggcg
ggaagtTCCGCGTTTGA

Synonyms

Publications