rna8141, rna8141 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8141
Unique Name	rna8141
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1277
Alignment location	KK037247.1:663011..665105 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF599
Orig transcript id	gnl\|cribi\|Naga_100372g2.5024.mrna
Orig protein id	gnl\|cribi\|Naga_100372g2.5024
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:663011..665105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100372g2	gene7885	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8141	rna8141-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22556.1	cds8117	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:663011..665105+
coding sequence from alignment at KK037247.1:663011..665105+

mRNA sequence

>rna8141 ID=rna8141|Name=rna8141|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp
TGGGGAGGCCCACTAGTTCGACATCCTTAAATACCAAACGGCCCACACCA
TCGCGCTGCACACAATTCGATGCCCAGGGTACTTCCACGAGGCCTGTTTG
CTGGCGAGAAGGGATCAAACGTATTCTTTTGAGAGAGAGTACACGTAAAT
TAGAGAAACCGGGACAATTTTCTATCGGCAATCTGTCCCACAGCATTAGT
TGCCATGCCAGCGGCCATGGTTGCTTCTGCTGCCCCTCCCGCGGCCTCCT
CCTCAAGAGGAATCCATTTCGCTCCTCTACCTTCCACAACATCCTCGTCT
TCATCTCAATCGGACCTCAAGCCGAAGGATGCCTGCACTCATCCCTCTGC
GCCGGAGGAGGGAGAAGGGGAGATCATCGTAGCGCACATTCAAGATCCCT
CTTCTGAGGACGGCATGGTGACGAAACGCTTCCTGAAAGGAAAGCTGCTG
GGCAAGGGTGGCTTTGCCAAGTGTTACGGGGCCACGTGCTTGGAGACGCG
AACGGAGTACGCGTTGAAAATCGTCGTCAAGGCCTCCCTGGCGAAGAGTA
AAGCTCGACATAAGCAACTGCAAACCGAAATTCGCATCCACCGGACGCTA
GACCACGAGCACATCGTCAAGTTCCATCACTTCTTCGAGGACAAACACCA
TGCCTACATCCTCCTCGAGCTCTGCCACAACCACTCCATGTCCGACCTTA
TCCGGCGCCGAAAACGCCTCACAGAGGGGGAGGTTCAGTACTATCTCCTC
CAACTTCTTGAGGCACTTCGGCACCTCCACGCCAAAGGCGTCATTCATCG
AGACCTTAAGCTGGGAAACCTGTTTCTGGACAAGCACATGCGGATCAAGG
TTGGGGATCTGGGCCTGGCCGCCAAGCTCCTCAGCCGCGCAGACAGGAAA
AAGACCATGTGCGGCACCCCCAACTACATAGCTCCGGAGATTCTAGAATG
TTCCACCGGGCACTCCTTCCAGGTGGACATCTGGAGCCTGGGGGTCATCG
CCTATACCCTCCTCATCGGTCGCCCGCCGTTCGAATGCAAGGACGTGAAG
TCTACCTACCAACGCATTCTCGCCAACCGTTACAATTTTCCTGACGCCAT
TCCCATCTCAGACGCGGCCAAGGACTTAATTCGCTCCATGCTGCAGAGTC
AGCCGGAGAACCGCCCCTCGCTCGAGGCCCTCGGGCGCATGACCTTCCTT
GCCCAGGTACCCTCCTCCTTCCCTCTCCCCACCCTTCTTTACCTCTCTTT
CTCCCGCTTTGCCGCTCACAGATCCCT

protein sequence of rna8141

>rna8141-protein ID=rna8141-protein|Name=rna8141|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MTDPSVNNRGQTPPPLSFALHSPHRPNNGASHHQTSARHDDIFHHITGQE
LPAPSSSTLRLNKPLVRRKHREILVFIFPIVFALIPVVFIIFSSPHAGSR
ISFDLTTHVPPIICFIVIPMYHIYMFAYRGKGKASLPFFGNIRVHWVLEN
CNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLS
GCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRP
LRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGF
AYYVESTNAFLHAANHVIGETEGASVFNNDGAPEGLKEGGKEGGKEGGRE
GGKEGGKEGIPRCTSLAEQLYSDFPPPPPGDYGRVARGAEENDGREGGGG
AV

mRNA from alignment at KK037247.1:663011..665105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8141 ID=rna8141|Name=rna8141|organism=Nannochloropsis gaditana|type=mRNA|length=2095bp|location=Sequence derived from alignment at KK037247.1:663011..665105+ (Nannochloropsis gaditana)
TTGCTGCTCGGTTGATGGGAAGCCAGGGGTTTGGACAGGGCGATTTTGTT
CCAAGAACTGTTTGCCGTACGGGGTAACGGCACGATGACGCCATCTTAAG
CCTTATGCCATACGTCTACAAGACTCGTATGTCCAGAAAGGCTCCCCGCT
CGGAGGCTTTAGACCCGGCCACGGTAGTATTTGGTGCATGTAAATCGTGT
CAAGATGTTTTATTCAATATGTTTGTCGTGGCTCGCTCCTTTTCTTGGGT
TTGTATCTGACTACAAGTTTCGCAAGTGGTGGCTTTGTTTACGTGTTGCT
TTCTGCATGTCTCCTCAACTtaccccccgcctcttccattttcctccagT
TCCGTTCTCTTTCCTCACTCACACATCGACGAAGGTCAAATGACGGACCC
CTCTGTCAACAATCGGGGTCAaacaccacctcctctctcgtttGCCCTAC
ACTCTCCCCATCGACCAAACAACGGAGCTAGCCATCACCAGACCTCCGCC
CGTCATGATGACATCTTCCACCACATCACCGGCCAAGAGCTCCCTGCACC
TTCTAGTAGCACATTGAGGCTGAACAAGCCCCTTGTCAGACGGAAACACC
GGGAGATTCTGGTTTTCATCTTTCCCATCGTGTTCGCCCTCATTCCGGTA
GTCTtcatcatcttctcctccccgcatGCGGGATCCCGGATCTCCTTCGA
CCTCACCACCCATGTGCCTCCAATTATTTGCTTTATCGTCATCCCCATGT
ACCACATATATATGTTCGCGTATcgtggaaaagggaaggccTCGTTGCCC
TTCTTCGGCAATATTCGGGTGCATTGGGTTTTGGAAAATTGCAACACGGG
GGAGTTGGCTCCCCTGAACACCTTGCGCGATTTCGGAAAggtttctctct
tcctcgccgcGAATGCCACCCTGGCGGCGTCCATTATTGTCACCTTCGCA
TATCAGGTAggtgtggggaggggaggggagggagggagggagagaggggg
gaaaataaAAAAGGAGAACTCCAAAAAAACGAGGCAGCAAGAGCGTGCGA
TCAACAACGAACAGGCTCGAAGAAGGTTGTCAGTAAGACCCTCCGTCGCC
GCTACCTCCCGAcctcaccttctccctcgcctctccctccagatCTTTAA
CCGTTGCCCTAACCAGTCCCTCTCGGGCTGTGGACCGGACAACTTGTACC
TGGTCGCACAAGTGAGTCGAAGCAAAcgccctgcttctccttctcctccc
tctcactctccctccctccctccctccctccctcccagttGGTGGTCCTC
ATCGTCAACTTCTTCTTCGTAATCATCCACATGCTCATGGCCACCCGCTT
TATCATGAACTGTGAATTCATGCTGAACGTGAAGGAAGTGGGTGGACGGC
CCTTGAGGCCGGAGGCTGgtaggtgggagggagggagggtgggagggagg
gagcgagggagggagggagggaggcacggagGAAGTTGTAAGTctgtgcc
cccccctccccccgttccATACGTACATTCTTCCCTCGACAAACGCCACC
CGCGTCCGCACCCACCCCTCCAgtcgcctccgtcctctctcgGGCCAACC
TGTACTACGGCATTGGTCTCCGGCAGACTTACTACTCgattcccctcttc
tcctggcTGCTGGGGCCGTGGACCCTGGTGGGCATGACGGTCCTCTACCT
GGGCTTCGCCTACTACGTGGAGAGCACCAATGCCTTTCTGCACGCGGCCA
ACCATGTGAtcggtaggaagggagggcttcGGGGCGGGGATCTCGCGAgc
tggggaggaggaagctgacgTCGATACCGCGCCATTCACAGGAGAGACTG
AAGGAGCCTCTGTCTTCAACAACGACGGCGCGCCGGAGggattgaaggag
ggagggaaggaaggagggaaggaaggagggagggagggagggaaggaagg
agggaaggaaggcatcCCACGGTGTACGTCCTTGGCTGAACAACTGTACT
CtgactttccccctccccctccgggaGACTACGGGCGGGTGGCGagaggc
gcggaggagaatGACGgtcgagaaggcgggggcggggccgtgTAA

Coding sequence (CDS) from alignment at KK037247.1:663011..665105+

>rna8141 ID=rna8141|Name=rna8141|organism=Nannochloropsis gaditana|type=CDS|length=6045bp|location=Sequence derived from alignment at KK037247.1:663011..665105+ (Nannochloropsis gaditana)
ATGACGGACCCCTCTGTCAACAATCGGGGTCAaacaccacctcctctctc
gtttGCCCTACACTCTCCCCATCGACCAAACAACGGAGCTAGCCATCACC
AGACCTCCGCCCGTCATGATGACATCTTCCACCACATCACCGGCCAAGAG
CTCCCTGCACCTTCTAGTAGCACATTGAGGCTGAACAAGCCCCTTGTCAG
ACGGAAACACCGGGAGATTCTGGTTTTCATCTTTCCCATCGTGTTCGCCC
TCATTCCGGTAGTCTtcatcatcttctcctccccgcatGCGGGATCCCGG
ATCTCCTTCGACCTCACCACCCATGTGCCTCCAATTATTTGCTTTATCGT
CATCCCCATGTACCACATATATATGTTCGCGTATcgtggaaaagggaagg
ccTCGTTGCCCTTCTTCGGCAATATTCGGGTGCATTGGGTTTTGGAAAAT
TGCAACACGGGGGAGTTGGCTCCCCTGAACACCTTGCGCGATTTCGGAAA
ggtttctctcttcctcgccgcGAATGCCACCCTGGCGGCGTCCATTATTG
TCACCTTCGCATATCAGatCTTTAACCGTTGCCCTAACCAGTCCCTCTCG
GGCTGTGGACCGGACAACTTGTACCTGGTCGCACAAttGGTGGTCCTCAT
CGTCAACTTCTTCTTCGTAATCATCCACATGCTCATGGCCACCCGCTTTA
TCATGAACTGTGAATTCATGCTGAACGTGAAGGAAGTGGGTGGACGGCCC
TTGAGGCCGGAGGCTGtcgcctccgtcctctctcgGGCCAACCTGTACTA
CGGCATTGGTCTCCGGCAGACTTACTACTCgattcccctcttctcctggc
TGCTGGGGCCGTGGACCCTGGTGGGCATGACGGTCCTCTACCTGGGCTTC
GCCTACTACGTGGAGAGCACCAATGCCTTTCTGCACGCGGCCAACCATGT
GAtcgGAGAGACTGAAGGAGCCTCTGTCTTCAACAACGACGGCGCGCCGG
AGggattgaaggagggagggaaggaaggagggaaggaaggagggagggag
ggagggaaggaaggagggaaggaaggcatcCCACGGTGTACGTCCTTGGC
TGAACAACTGTACTCtgactttccccctccccctccgggaGACTACGGGC
GGGTGGCGagaggcgcggaggagaatGACGgtcgagaaggcgggggcggg
gccgtgTAAATGACGGACCCCTCTGTCAACAATCGGGGTCAaacaccacc
tcctctctcgtttGCCCTACACTCTCCCCATCGACCAAACAACGGAGCTA
GCCATCACCAGACCTCCGCCCGTCATGATGACATCTTCCACCACATCACC
GGCCAAGAGCTCCCTGCACCTTCTAGTAGCACATTGAGGCTGAACAAGCC
CCTTGTCAGACGGAAACACCGGGAGATTCTGGTTTTCATCTTTCCCATCG
TGTTCGCCCTCATTCCGGTAGTCTtcatcatcttctcctccccgcatGCG
GGATCCCGGATCTCCTTCGACCTCACCACCCATGTGCCTCCAATTATTTG
CTTTATCGTCATCCCCATGTACCACATATATATGTTCGCGTATcgtggaa
aagggaaggccTCGTTGCCCTTCTTCGGCAATATTCGGGTGCATTGGGTT
TTGGAAAATTGCAACACGGGGGAGTTGGCTCCCCTGAACACCTTGCGCGA
TTTCGGAAAggtttctctcttcctcgccgcGAATGCCACCCTGGCGGCGT
CCATTATTGTCACCTTCGCATATCAGatCTTTAACCGTTGCCCTAACCAG
TCCCTCTCGGGCTGTGGACCGGACAACTTGTACCTGGTCGCACAAttGGT
GGTCCTCATCGTCAACTTCTTCTTCGTAATCATCCACATGCTCATGGCCA
CCCGCTTTATCATGAACTGTGAATTCATGCTGAACGTGAAGGAAGTGGGT
GGACGGCCCTTGAGGCCGGAGGCTGtcgcctccgtcctctctcgGGCCAA
CCTGTACTACGGCATTGGTCTCCGGCAGACTTACTACTCgattcccctct
tctcctggcTGCTGGGGCCGTGGACCCTGGTGGGCATGACGGTCCTCTAC
CTGGGCTTCGCCTACTACGTGGAGAGCACCAATGCCTTTCTGCACGCGGC
CAACCATGTGAtcgGAGAGACTGAAGGAGCCTCTGTCTTCAACAACGACG
GCGCGCCGGAGggattgaaggagggagggaaggaaggagggaaggaagga
gggagggagggagggaaggaaggagggaaggaaggcatcCCACGGTGTAC
GTCCTTGGCTGAACAACTGTACTCtgactttccccctccccctccgggaG
ACTACGGGCGGGTGGCGagaggcgcggaggagaatGACGgtcgagaaggc
gggggcggggccgtgTAAATGACGGACCCCTCTGTCAACAATCGGGGTCA
aacaccacctcctctctcgtttGCCCTACACTCTCCCCATCGACCAAACA
ACGGAGCTAGCCATCACCAGACCTCCGCCCGTCATGATGACATCTTCCAC
CACATCACCGGCCAAGAGCTCCCTGCACCTTCTAGTAGCACATTGAGGCT
GAACAAGCCCCTTGTCAGACGGAAACACCGGGAGATTCTGGTTTTCATCT
TTCCCATCGTGTTCGCCCTCATTCCGGTAGTCTtcatcatcttctcctcc
ccgcatGCGGGATCCCGGATCTCCTTCGACCTCACCACCCATGTGCCTCC
AATTATTTGCTTTATCGTCATCCCCATGTACCACATATATATGTTCGCGT
ATcgtggaaaagggaaggccTCGTTGCCCTTCTTCGGCAATATTCGGGTG
CATTGGGTTTTGGAAAATTGCAACACGGGGGAGTTGGCTCCCCTGAACAC
CTTGCGCGATTTCGGAAAggtttctctcttcctcgccgcGAATGCCACCC
TGGCGGCGTCCATTATTGTCACCTTCGCATATCAGatCTTTAACCGTTGC
CCTAACCAGTCCCTCTCGGGCTGTGGACCGGACAACTTGTACCTGGTCGC
ACAAttGGTGGTCCTCATCGTCAACTTCTTCTTCGTAATCATCCACATGC
TCATGGCCACCCGCTTTATCATGAACTGTGAATTCATGCTGAACGTGAAG
GAAGTGGGTGGACGGCCCTTGAGGCCGGAGGCTGtcgcctccgtcctctc
tcgGGCCAACCTGTACTACGGCATTGGTCTCCGGCAGACTTACTACTCga
ttcccctcttctcctggcTGCTGGGGCCGTGGACCCTGGTGGGCATGACG
GTCCTCTACCTGGGCTTCGCCTACTACGTGGAGAGCACCAATGCCTTTCT
GCACGCGGCCAACCATGTGAtcgGAGAGACTGAAGGAGCCTCTGTCTTCA
ACAACGACGGCGCGCCGGAGggattgaaggagggagggaaggaaggaggg
aaggaaggagggagggagggagggaaggaaggagggaaggaaggcatcCC
ACGGTGTACGTCCTTGGCTGAACAACTGTACTCtgactttccccctcccc
ctccgggaGACTACGGGCGGGTGGCGagaggcgcggaggagaatGACGgt
cgagaaggcgggggcggggccgtgTAAATGACGGACCCCTCTGTCAACAA
TCGGGGTCAaacaccacctcctctctcgtttGCCCTACACTCTCCCCATC
GACCAAACAACGGAGCTAGCCATCACCAGACCTCCGCCCGTCATGATGAC
ATCTTCCACCACATCACCGGCCAAGAGCTCCCTGCACCTTCTAGTAGCAC
ATTGAGGCTGAACAAGCCCCTTGTCAGACGGAAACACCGGGAGATTCTGG
TTTTCATCTTTCCCATCGTGTTCGCCCTCATTCCGGTAGTCTtcatcatc
ttctcctccccgcatGCGGGATCCCGGATCTCCTTCGACCTCACCACCCA
TGTGCCTCCAATTATTTGCTTTATCGTCATCCCCATGTACCACATATATA
TGTTCGCGTATcgtggaaaagggaaggccTCGTTGCCCTTCTTCGGCAAT
ATTCGGGTGCATTGGGTTTTGGAAAATTGCAACACGGGGGAGTTGGCTCC
CCTGAACACCTTGCGCGATTTCGGAAAggtttctctcttcctcgccgcGA
ATGCCACCCTGGCGGCGTCCATTATTGTCACCTTCGCATATCAGatCTTT
AACCGTTGCCCTAACCAGTCCCTCTCGGGCTGTGGACCGGACAACTTGTA
CCTGGTCGCACAAttGGTGGTCCTCATCGTCAACTTCTTCTTCGTAATCA
TCCACATGCTCATGGCCACCCGCTTTATCATGAACTGTGAATTCATGCTG
AACGTGAAGGAAGTGGGTGGACGGCCCTTGAGGCCGGAGGCTGtcgcctc
cgtcctctctcgGGCCAACCTGTACTACGGCATTGGTCTCCGGCAGACTT
ACTACTCgattcccctcttctcctggcTGCTGGGGCCGTGGACCCTGGTG
GGCATGACGGTCCTCTACCTGGGCTTCGCCTACTACGTGGAGAGCACCAA
TGCCTTTCTGCACGCGGCCAACCATGTGAtcgGAGAGACTGAAGGAGCCT
CTGTCTTCAACAACGACGGCGCGCCGGAGggattgaaggagggagggaag
gaaggagggaaggaaggagggagggagggagggaaggaaggagggaagga
aggcatcCCACGGTGTACGTCCTTGGCTGAACAACTGTACTCtgactttc
cccctccccctccgggaGACTACGGGCGGGTGGCGagaggcgcggaggag
aatGACGgtcgagaaggcgggggcggggccgtgTAAATGACGGACCCCTC
TGTCAACAATCGGGGTCAaacaccacctcctctctcgtttGCCCTACACT
CTCCCCATCGACCAAACAACGGAGCTAGCCATCACCAGACCTCCGCCCGT
CATGATGACATCTTCCACCACATCACCGGCCAAGAGCTCCCTGCACCTTC
TAGTAGCACATTGAGGCTGAACAAGCCCCTTGTCAGACGGAAACACCGGG
AGATTCTGGTTTTCATCTTTCCCATCGTGTTCGCCCTCATTCCGGTAGTC
TtcatcatcttctcctccccgcatGCGGGATCCCGGATCTCCTTCGACCT
CACCACCCATGTGCCTCCAATTATTTGCTTTATCGTCATCCCCATGTACC
ACATATATATGTTCGCGTATcgtggaaaagggaaggccTCGTTGCCCTTC
TTCGGCAATATTCGGGTGCATTGGGTTTTGGAAAATTGCAACACGGGGGA
GTTGGCTCCCCTGAACACCTTGCGCGATTTCGGAAAggtttctctcttcc
tcgccgcGAATGCCACCCTGGCGGCGTCCATTATTGTCACCTTCGCATAT
CAGatCTTTAACCGTTGCCCTAACCAGTCCCTCTCGGGCTGTGGACCGGA
CAACTTGTACCTGGTCGCACAAttGGTGGTCCTCATCGTCAACTTCTTCT
TCGTAATCATCCACATGCTCATGGCCACCCGCTTTATCATGAACTGTGAA
TTCATGCTGAACGTGAAGGAAGTGGGTGGACGGCCCTTGAGGCCGGAGGC
TGtcgcctccgtcctctctcgGGCCAACCTGTACTACGGCATTGGTCTCC
GGCAGACTTACTACTCgattcccctcttctcctggcTGCTGGGGCCGTGG
ACCCTGGTGGGCATGACGGTCCTCTACCTGGGCTTCGCCTACTACGTGGA
GAGCACCAATGCCTTTCTGCACGCGGCCAACCATGTGAtcgGAGAGACTG
AAGGAGCCTCTGTCTTCAACAACGACGGCGCGCCGGAGggattgaaggag
ggagggaaggaaggagggaaggaaggagggagggagggagggaaggaagg
agggaaggaaggcatcCCACGGTGTACGTCCTTGGCTGAACAACTGTACT
CtgactttccccctccccctccgggaGACTACGGGCGGGTGGCGagaggc
gcggaggagaatGACGgtcgagaaggcgggggcggggccgtgTAA

Synonyms

Publications