EWM22556.1, cds8117 (CDS) Nannochloropsis gaditana

Overview
NameEWM22556.1
Unique Namecds8117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:663400..663966 +
Alignment locationKK037247.1:664153..664221 +
Alignment locationKK037247.1:664299..664428 +
Alignment locationKK037247.1:664584..664772 +
Alignment locationKK037247.1:664852..665105 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22556.1
ProductProtein of unknown function DUF599
Orig transcript idgnl|cribi|Naga_100372g2.5024.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:663400..663966 +
KK037247.1supercontigKK037247.1:664153..664221 +
KK037247.1supercontigKK037247.1:664299..664428 +
KK037247.1supercontigKK037247.1:664584..664772 +
KK037247.1supercontigKK037247.1:664852..665105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006747DUF599
Homology
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|585103101|gb|EWM22556.1| (Protein of unknown function DUF599 [Nannochloropsis gaditana])

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query:    1 MTDPSVNNRGQTPPPLSFALHSPHRPNNGASHHQTSARHDDIFHHITGQELPAPSSSTLRLNKPLVRRKHREILVFIFPIVFALIPVVFIIFSSPHAGSRISFDLTTHVPPIICFIVIPMYHIYMFAYRGKGKASLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVESTNAFLHAANHVIGETEGASVFNNDGAPEGLKEGGKEGGKEGGREGGKEGGKEGIPRCTSLAEQLYSDFPPPPPGDYGRVARGAEENDGREGGGGAV 402
            MTDPSVNNRGQTPPPLSFALHSPHRPNNGASHHQTSARHDDIFHHITGQELPAPSSSTLRLNKPLVRRKHREILVFIFPIVFALIPVVFIIFSSPHAGSRISFDLTTHVPPIICFIVIPMYHIYMFAYRGKGKASLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVESTNAFLHAANHVIGETEGASVFNNDGAPEGLKEGGKEGGKEGGREGGKEGGKEGIPRCTSLAEQLYSDFPPPPPGDYGRVARGAEENDGREGGGGAV
Sbjct:    1 MTDPSVNNRGQTPPPLSFALHSPHRPNNGASHHQTSARHDDIFHHITGQELPAPSSSTLRLNKPLVRRKHREILVFIFPIVFALIPVVFIIFSSPHAGSRISFDLTTHVPPIICFIVIPMYHIYMFAYRGKGKASLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVESTNAFLHAANHVIGETEGASVFNNDGAPEGLKEGGKEGGKEGGREGGKEGGKEGIPRCTSLAEQLYSDFPPPPPGDYGRVARGAEENDGREGGGGAV 402          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|299116659|emb|CBN74804.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.2117 bits (243), Expect = 4.199e-20
Identity = 55/197 (27.92%), Postives = 103/197 (52.28%), Query Frame = 0
Query:  105 LTTHVPPIICFIVIPMYHIYMFA--YRGKGKASLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLVAQ--LVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLY 297
            +T  V P +CF V   +  +     ++ +   +   F ++R  WV++N   G+ A +NT RD+ + +LF A  A L A+ +V +A  I+  C +   S    D L+++    L  L++  FFV       TR+ ++  F +N +++ G P+    +  V + A+ YY +G+R  + +IP+F+W+   W L+ +T +Y
Sbjct:   11 ITQVVIPAVCFAVCAAFQGWELWGPHKPELARARALFRDVRAGWVVDNYMKGQ-AAVNTTRDYIRAALFFANTAILLATFVVGYAGSIYTDCSDGDTSCSADDWLFVIKLGVLAALLMTIFFVFTQ---CTRYAVHFSFCINTRKIAGAPMPQSLMVKVFNHAHQYYSLGIRLYFGTIPVFAWIFTSWALLAVTPVY 203          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|299116654|emb|CBN74799.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.4261 bits (215), Expect = 5.762e-16
Identity = 57/199 (28.64%), Postives = 98/199 (49.25%), Query Frame = 0
Query:  104 DLTTHVPPIICFIVIPMYHIYMFAYRGKGKA-SLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLV---AQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYL 298
            +L   V P ICF V   +  + F       A +   F  +R  WV +    G  A  NT RD+ K ++F+A  A   A+  V +A  I+  C +        D L+++       VL+VNFF     +   TRF ++  F +N +E+ G P+    + +V   ++ Y+ +G+R  + +IP+F+W+  PW L+ +T +Y+
Sbjct:    9 NLQEVVIPAICFAVCAGFQTWEFLGSHDDPARARTLFKAVRAGWVKDQFMKGT-AACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTDCSDDDDDCTPEDWLFVIKLGCLSAVLLVNFFV----LTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYV 202          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|1176021934|gb|OQX27588.1| (hypothetical protein BWK80_04515 [Desulfobacteraceae bacterium IS3])

HSP 1 Score: 70.4774 bits (171), Expect = 2.575e-10
Identity = 58/198 (29.29%), Postives = 98/198 (49.49%), Query Frame = 0
Query:  116 IVIPMYHIYMF--AYRGKGKASLPFFGNIRVHWVLENCN-TGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCP----NQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLR-PEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVE 305
            +++ +YHI++F        K S+     +R  WV        ++  + TLR++   + FLA+ A      I+  A+    R P      +  G     L+L+ +L+VLIV  FF   +  ++ R+  +   M+NV  V   PL  PEAV + L+R  L+Y +G+R  Y +IP   WL GP  ++G TV+ +   Y ++
Sbjct:   29 LMLAVYHIHLFFQIRHSPLKTSVGLTNRLRSDWVRTMMQGRMDIVAVQTLRNWTMAASFLASTAIFINVGIMNTAFHT-ERVPEIAHTLNFMGSTCHRLWLI-KLLVLIVELFFAFFNFSLSVRYYNHASLMINVP-VEQDPLNTPEAVVATLNRGALHYMLGMRGYYLAIPFTLWLFGPTWMLGGTVIMIPVLYKLD 223          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|302818381|ref|XP_002990864.1| (hypothetical protein SELMODRAFT_272166 [Selaginella moellendorffii] >gi|300141425|gb|EFJ08137.1| hypothetical protein SELMODRAFT_272166 [Selaginella moellendorffii])

HSP 1 Score: 67.781 bits (164), Expect = 2.289e-9
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = 0
Query:  144 VHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFN-RCPNQSLSGC-----GPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVE 305
            VH ++++ +   +  + TLR+    S  +A+ A L +S +  F    ++ + P    S         D++ +  + V L+  F F  I  + + RF  +  F++N    G   + P+ VA+VL+R + +Y +G R  Y++ PL  WL GP  +V   ++ + F Y ++
Sbjct:   53 VHSIMKDNDKKNILAVQTLRNSIMASTLMASTAILLSSGLAAFLSSSYSVKRPLHGFSSTVTVLGAHDDITIATKFVALLACFLFSFICYMQSVRFTNHVGFLINTPVTGDSKITPDYVAAVLARGSNFYTVGTRGYYFAFPLLLWLFGPIPVVVACLVLVPFLYRLD 220          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|302785111|ref|XP_002974327.1| (hypothetical protein SELMODRAFT_228264 [Selaginella moellendorffii] >gi|300157925|gb|EFJ24549.1| hypothetical protein SELMODRAFT_228264 [Selaginella moellendorffii])

HSP 1 Score: 66.6254 bits (161), Expect = 5.375e-9
Identity = 43/168 (25.60%), Postives = 82/168 (48.81%), Query Frame = 0
Query:  144 VHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFN-RCPNQSLSGC-----GPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVE 305
            VH ++++ +   +  + TLR+    S  +A+ A L +S +  F    ++ + P    S         D++ +  + V L+  F F  I  + + RF  +  F++N        + P+ VA+VL+R + +Y +G R  Y++ PL  WL GP  +V   +L + F Y ++
Sbjct:   53 VHSIMKDNDKKNILAVQTLRNSIMASTLMASTAILLSSGLAAFLSSSYSVKRPLHGFSSTVTVLGAHDDITIATKFVALLACFLFSFICYMQSVRFTNHVGFLINTPVTSDSKITPDYVAAVLARGSNFYTVGTRGYYFAFPLLLWLFGPIPVVVACLLLVPFLYRLD 220          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|1084910240|gb|OGR30691.1| (hypothetical protein A2139_05365 [Desulfobacca sp. RBG_16_60_12])

HSP 1 Score: 65.0846 bits (157), Expect = 1.266e-8
Identity = 54/191 (28.27%), Postives = 103/191 (53.93%), Query Frame = 0
Query:  115 FIVIPMYHIYMF--AYRGKGKASLPFFGNIRVHWVLENC--NTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAY---QIFNRCPNQSLSGCGPDNLYL-VAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGP-WTLVGMTVL 296
            F+++ +YH++     YR     ++    ++R HWV E+      ++  + TLR++   + FLA+   L    +++ A    ++    P  SL+    ++  L + +L+VLIV+FFF+     ++ R++ +  FM+NV       + PE +  +L+R  ++Y +G+R  Y+S+ LF WL GP W L+G  V+
Sbjct:   16 FLILGIYHLHWLYLIYRKPMATAVGITNHLRGHWV-ESIMEERRDILAVQTLRNWTMAASFLASTGILICLGLLSVAASPEKMAEITP--SLNAVVQEHRVLWLFKLMVLIVDFFFIFFSFCLSIRYLNHVNFMINVPFNLAHKITPEYITGILNRGMMHYTMGMRGYYFSVLLFLWLFGPIWMLIGTVVM 203          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|739711012|ref|WP_037564866.1| (DUF599 domain-containing protein [Spirochaeta odontotermitis] >gi|699052585|gb|KGM38432.1| hypothetical protein JY97_16285 [Spirochaeta odontotermitis])

HSP 1 Score: 63.929 bits (154), Expect = 2.942e-8
Identity = 54/200 (27.00%), Postives = 99/200 (49.50%), Query Frame = 0
Query:  112 IICFIVIPMYHIYM-FAYRGKGKASLPFFGN-IRVHWVLE-NCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQ--IFNRCPNQ-SLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVE 305
            +I    I  Y +++ F  R K   ++    N +R  WV     +  ++  + TLR+    + FLA+ A L +  ++  A +  +F       +L+G   D L+++ +L++L V FF    +  +  R+  +  FM+N+ E G      + VA VL+   L+Y +G+R  Y S+PL  W+ GP  ++  T + LG  Y ++
Sbjct:    8 LISLASIIAYQVHLVFMVRRKPLTTMVGITNRVRCKWVQSVMADRHDILAVQTLRNQMMAATFLASTAILISLGLLGAAIRPGLFGEISQALNLTGARADTLWML-KLMILAVLFFSAFFNFTLTIRYYNHTGFMINLAESGEAVASVKGVAEVLNLGALHYTLGMRGYYLSVPLVLWIFGPLCMLAGTAVLLGVLYRLD 206          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|1082828490|gb|OGB42800.1| (hypothetical protein A2461_07920 [Burkholderiales bacterium RIFOXYC2_FULL_59_8])

HSP 1 Score: 63.5438 bits (153), Expect = 4.960e-8
Identity = 52/198 (26.26%), Postives = 93/198 (46.97%), Query Frame = 0
Query:  113 ICFIVIPMYHIYM---------FAYRGKGKASLPFFGNIRVHWVLENCN--TGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQ---IFNRCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGR-PLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTV 295
            +  +++ +Y++++         F   G  K +       R  WVL        ++  + TLR+F   +  +A+ ATL     +T + Q   I       ++ G     L+++ +++ L+V+F       +MA R + +  FM+N  E      L PEAVA  L+RA   + IG+R  ++++PL  WL GP  LV  T+
Sbjct:   19 LSMMIVALYYLWLGRQVRRDPTFTIHGVNKLA-------RTLWVLHVMRHPAKDVMAVQTLRNFIMGASLMASTATLLIIGTLTLSGQAESISRTWHVLNVGGAHAAELWII-KVICLLVDFIVAFFAFVMAVRLVNHVVFMINTPEPDAHHNLAPEAVARRLNRAGNLFAIGMRAFFFAVPLMFWLFGPAFLVVATI 208          
BLAST of EWM22556.1 vs. NCBI_GenBank
Match: gi|302790103|ref|XP_002976819.1| (hypothetical protein SELMODRAFT_105772 [Selaginella moellendorffii] >gi|300155297|gb|EFJ21929.1| hypothetical protein SELMODRAFT_105772 [Selaginella moellendorffii])

HSP 1 Score: 63.5438 bits (153), Expect = 6.443e-8
Identity = 51/212 (24.06%), Postives = 99/212 (46.70%), Query Frame = 0
Query:  113 ICFIVIPMYHIYM-FAYRGKGKASLPFFGNI-RVHWV---LENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFN-RCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPL-RPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVESTNAFLHAANHV 317
            +  ++I  YHI++ +  R     ++    NI +  WV   +++ +   +  + TLR+    S  +A+ A L  S +  F    ++ + P +S      D+  +  + + L+  F F  +  + + RF+ N  +++NV    G PL  PE V  VL R   +Y IG R  Y + PL  W+ GP  ++  ++  +   Y+++ +   + A   V
Sbjct:    9 VAILIIVAYHIFLLYKIRKDPLQTVIGINNIAKRAWVRSIMKDMDKKNILAVQTLRNSIMASTLMASTAILLTSGVAAFLSSNYSVKRPLESAVYGARDDFSIAVKFLSLLACFLFSFLCYMQSIRFVNNVNYLINVPPSYGSPLITPEFVGDVLVRGFAFYSIGTRAFYVAFPLLLWIYGPIPVLLCSIALVPVLYHLDVSGDVVGAVRDV 220          
The following BLAST results are available for this feature:
BLAST of EWM22556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103101|gb|EWM22556.1|0.000e+0100.00Protein of unknown function DUF599 [Nannochloropsi... [more]
gi|299116659|emb|CBN74804.1|4.199e-2027.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|299116654|emb|CBN74799.1|5.762e-1628.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|1176021934|gb|OQX27588.1|2.575e-1029.29hypothetical protein BWK80_04515 [Desulfobacterace... [more]
gi|302818381|ref|XP_002990864.1|2.289e-925.60hypothetical protein SELMODRAFT_272166 [Selaginell... [more]
gi|302785111|ref|XP_002974327.1|5.375e-925.60hypothetical protein SELMODRAFT_228264 [Selaginell... [more]
gi|1084910240|gb|OGR30691.1|1.266e-828.27hypothetical protein A2139_05365 [Desulfobacca sp.... [more]
gi|739711012|ref|WP_037564866.1|2.942e-827.00DUF599 domain-containing protein [Spirochaeta odon... [more]
gi|1082828490|gb|OGB42800.1|4.960e-826.26hypothetical protein A2461_07920 [Burkholderiales ... [more]
gi|302790103|ref|XP_002976819.1|6.443e-824.06hypothetical protein SELMODRAFT_105772 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8141rna8141Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications