rna814, rna814 (mRNA) Nannochloropsis gaditana

Overview
Namerna814
Unique Namerna814
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1917
Alignment locationCM002456.1:484366..485208 +

Link to JBrowse

Properties
Property NameValue
Productdna-directed rna polymerase iii subunit rpc8
Orig transcript idgnl|cribi|Naga_100017g5.354.mrna
Orig protein idgnl|cribi|Naga_100017g5.354
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:484366..485208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g5gene780Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna814rna814-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29856.1cds814Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna814 ID=rna814|Name=rna814|organism=Nannochloropsis gaditana|type=mRNA|length=1917bp
ATGCGGCGCGTGTTTCATGAAGGAACGACAGGGGGAGAGGGAATAGCCAG
CGCCTTGCCCAACACAGCCACCACCGCTTCGAGGGCCATTCATTTCCAGA
GTCGACTGCGTCTTGCATTCCGCACGACGCCGTCGATCTGTGCCCTTTTA
CTGGCTATGCCGCTTTTACTTTCTCCCCACTGGACGCGGTCGGTTTGCGT
CGTGAGTGCATTTCATTTAAGGCCATCAACGGCCTCCAAGGTCTCCCGTG
GAGTGGGCCGTTCTCGCGAAGTGCTACGTATGATGGGGGCCTTTGGAGGC
ATCTCCTCCCAGCCCTTTTCCACGCCAGCTATCCCGTCAAAGACAACGAG
TCGAAGCGGTGACGAGAACGCAGCTTGTGACCTGGCGGAATTTCGTCGAT
TGGGTTTGGGGGAGGAGACTCTCGAAGGCCTGCGGAAGCTGGGTATCAAG
GAACCCTCTGTGATTCAGCGCCTTGCAATTCCCGCCGCTTTGAAAGGGGA
CGACGTCGCATTTTCCGCTTCCACAGGCTCTGGGAAAACCCTGGCGTACC
TGCTTCCGATCATGCAGGAGCTCAAGTGGCAGGAGGCCGTGGAGGGGAAA
GAGCGACAGACCTGCCGTCCTCGCGCCCTCATTTTAGTGCCCACCCGCGA
GCTCGTCACGCAGGTTCTGGAGGTGATCAAGTCCCTCAGCCACGTCATAA
AGCTGAGCTCCTGTGGCTTGCACGGCGGAGAGGATTTCGGGGTGCAGCGC
CGGCGGCTGGGCGGGATGGTGGATTTGGTAGTAGCCTCGCCGGGTCGGTT
GCTGCAGCACTACGAGAAGGGCCACGTCTTCTTCTCCCAGGTGACGCACG
TCGTGGTGGACGAGATGGACACCATGCTCAAGGACGGCTTCGGCCCGGAC
TTGAAGCGGCTCATGGTGCCCCTGGAGGCCAAGAGCAAGCGCGAGAAGGT
CCAGTACTTGATGGCGACCGCCACCCTGACCCCGGCAGTCAAGCGACTGA
TGGCTGAGGAGGGAAACTTCCCCAAGACGCGCTTCCTTCAGTCCGAAGAC
GCGCACAAGTCCCTCCCGACCATGCGGCACATCATGCTCGACACCAAGGG
CGGCGACAAAGTGCAGCTACTCCTGGACGTGGTCAGTCAGGGGCGCCAAA
ACGGGGAGCGGGCCATGATCTTCTGCAACACCGTGCAGAGCTGCCGGGCG
GCCGAACACGCCTTGCGGGAGCTGGCCCTTCCATCCGCATGCTACCATGG
GGACATGCGCTCGGAGGAGCGCGCGGCTGCCCTGGAGAAGTTCAAATCGG
GCGAGGTCTCCTTCCTGGTCTGCACGGACATTGCGTCCAGGGGTCTGGAC
ATGCCCTTCGTCGAGCATGTGGTCATGTTCGACTTCCCCTTGAACCCCAT
CGAGTACCTGCATCGCTCGGGCCGCACGGCACGCATGGGGGCGAAAGGCA
AAGTGACGAGCCTGCTCACGAAACGAGACAAGGTGCTTGCCTCTGCGGTG
CAGACGGCTGTAGCGAAGGGCTTGCCGTTAGACTCCTTGTCAGCGCGGAA
GCGTGACTACGAGTCCGGTGGGAAGCTTTCTGGCTTGTCGTCTGGGAAAA
TGGGGGCGTCGCCATCGAGTAAGGGGAATCGGCATGCTAAATACGTGGCA
AACAGACAGAGGAGCGCGAGTGGGCGGGCCGGGAGCATCGAGGGGTCCCC
CGAGAAGGGGGCTCGAGGCGTGAGACGCGCACCATCAGCGCCATCGGGAG
CGCAAGGTCCCTCGAGAAGGCGGGGAAGGGGCGATTCGGCAGTAGCAGGG
GGGGAGGACGCAGACGTTAGGTGGTTGCATCCATGTCATACAGACGGAAT
ATCAACGAGTGTAACAAAAATTATTGGCATCATGTTGTCCTTGCTCTTGA
TTTTTTTAATTTGCTAG
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protein sequence of rna814

>rna814-protein ID=rna814-protein|Name=rna814|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYD
FVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKIS
LGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEF
IRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEG
GGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG
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mRNA from alignment at CM002456.1:484366..485208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna814 ID=rna814|Name=rna814|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002456.1:484366..485208+ (Nannochloropsis gaditana)
ATGTTTCAACTTGCTGTAATCCGCGACACTATAAAAGTTCCTCCGGCCTC
TTTCAATCGTAACCAGATCGAGGTGCGTTTTCAACTCACGATTTGTCCCT
TGCAACATCTGTCGTCTAACCTCCCTGTCTGGACACTCCACTTTACCATC
ATTCTTCCCCACGCCTAAAACCAACAGGTCTTGACAGAGGAAGTGGATCG
AAAGTATGCCAATCGTATCGTCATGAATGTCGGGCTAGGTGTATGTCTGT
ATGATTTCGTTGACATCGGTGACGCTTACCTTTACCCCTCGGATGGTGCG
GCTCACCACAGGGTCACGTTCCGTTTGATGGTGTTCAGACCTTTCATAGG
AGAGGTTCTGGTAGGAAGAGTCAAACAATGTAGCGAAAATGGCATCAAAA
TAAGTTTGGGATTTTTCGATGACATTTTTGTGCCATCTTATCTTTTGCAA
ACACCCTCCGAGTTCGACCCCAGAGAGAACGTGTGGGTCTGGTCCTACAG
CAGTGACGAACCTGGAGAGCCCGCTGTGCGCTACCCCATGGAAGTGGATG
AATTCATCCGCTTTCGCGTCCGGTCTGTGAACTTCACACATACCAAATAC
AGCGGCAGTGGTGGGAGTGGGGCGGTCGGGGGCCTCGGCAATGTGGCGAC
AGGGCCCGTAGGAACGGTAGGCAATCCTGTGAATCCGAAGGTagaggtag
agggaggggggttaGGGCAAGTTCGACGTCCGCGCAGCGACACGTTGACG
GGAGACGAAAGTGTCGGGGGCCCTTTGCCACCTATGCAGTTGCTGGGTAC
AACGAACGAGGATGGTCTGGGCATGCTGGCGTGGTGGGGATAG
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Coding sequence (CDS) from alignment at CM002456.1:484366..485208+

>rna814 ID=rna814|Name=rna814|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002456.1:484366..485208+ (Nannochloropsis gaditana)
ATGTTTCAACTTGCTGTAATCCGCGACACTATAAAAGTTCCTCCGGCCTC
TTTCAATCGTAACCAGATCGAGGTCTTGACAGAGGAAGTGGATCGAAAGT
ATGCCAATCGTATCGTCATGAATGTCGGGCTAGGTGTATGTCTGTATGAT
TTCGTTGACATCGGTGACGCTTACCTTTACCCCTCGGATGGTGCGGCTCA
CCACAGGGTCACGTTCCGTTTGATGGTGTTCAGACCTTTCATAGGAGAGG
TTCTGGTAGGAAGAGTCAAACAATGTAGCGAAAATGGCATCAAAATAAGT
TTGGGATTTTTCGATGACATTTTTGTGCCATCTTATCTTTTGCAAACACC
CTCCGAGTTCGACCCCAGAGAGAACGTGTGGGTCTGGTCCTACAGCAGTG
ACGAACCTGGAGAGCCCGCTGTGCGCTACCCCATGGAAGTGGATGAATTC
ATCCGCTTTCGCGTCCGGTCTGTGAACTTCACACATACCAAATACAGCGG
CAGTGGTGGGAGTGGGGCGGTCGGGGGCCTCGGCAATGTGGCGACAGGGC
CCGTAGGAACGGTAGGCAATCCTGTGAATCCGAAGGTagaggtagaggga
ggggggttaGGGCAAGTTCGACGTCCGCGCAGCGACACGTTGACGGGAGA
CGAAAGTGTCGGGGGCCCTTTGCCACCTATGCAGTTGCTGGGTACAACGA
ACGAGGATGGTCTGGGCATGCTGGCGTGGTGGGGATAGATGTTTCAACTT
GCTGTAATCCGCGACACTATAAAAGTTCCTCCGGCCTCTTTCAATCGTAA
CCAGATCGAGGTCTTGACAGAGGAAGTGGATCGAAAGTATGCCAATCGTA
TCGTCATGAATGTCGGGCTAGGTGTATGTCTGTATGATTTCGTTGACATC
GGTGACGCTTACCTTTACCCCTCGGATGGTGCGGCTCACCACAGGGTCAC
GTTCCGTTTGATGGTGTTCAGACCTTTCATAGGAGAGGTTCTGGTAGGAA
GAGTCAAACAATGTAGCGAAAATGGCATCAAAATAAGTTTGGGATTTTTC
GATGACATTTTTGTGCCATCTTATCTTTTGCAAACACCCTCCGAGTTCGA
CCCCAGAGAGAACGTGTGGGTCTGGTCCTACAGCAGTGACGAACCTGGAG
AGCCCGCTGTGCGCTACCCCATGGAAGTGGATGAATTCATCCGCTTTCGC
GTCCGGTCTGTGAACTTCACACATACCAAATACAGCGGCAGTGGTGGGAG
TGGGGCGGTCGGGGGCCTCGGCAATGTGGCGACAGGGCCCGTAGGAACGG
TAGGCAATCCTGTGAATCCGAAGGTagaggtagagggaggggggttaGGG
CAAGTTCGACGTCCGCGCAGCGACACGTTGACGGGAGACGAAAGTGTCGG
GGGCCCTTTGCCACCTATGCAGTTGCTGGGTACAACGAACGAGGATGGTC
TGGGCATGCTGGCGTGGTGGGGATAG
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Synonyms
Publications