EWM29856.1, cds814 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|585112437|gb|EWM29856.1| (dna-directed rna polymerase iii subunit rpc8 [Nannochloropsis gaditana]) HSP 1 Score: 499.204 bits (1284), Expect = 1.266e-178 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG Sbjct: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|553189160|ref|XP_005854944.1| (DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526] >gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 447.588 bits (1150), Expect = 1.418e-158 Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0 Query: 26 LTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245 +TEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG Sbjct: 1 MTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 220
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|675188353|ref|XP_008903061.1| (DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >gi|566028080|gb|ETI50991.1| DNA-directed RNA polymerase [Phytophthora parasitica P1569] >gi|567965407|gb|ETK90878.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|567994122|gb|ETL44286.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568023392|gb|ETL97451.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568053794|gb|ETM50610.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568096496|gb|ETN11243.1| DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >gi|570331784|gb|ETO79732.1| DNA-directed RNA polymerase [Phytophthora parasitica P1976] >gi|570955629|gb|ETP20756.1| DNA-directed RNA polymerase [Phytophthora parasitica CJ01A1] >gi|570990819|gb|ETP48700.1| DNA-directed RNA polymerase [Phytophthora parasitica P10297]) HSP 1 Score: 208.764 bits (530), Expect = 3.595e-64 Identity = 108/246 (43.90%), Postives = 149/246 (60.57%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I V P F+ + +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C+E I++S+ F DI +PSY LQTPS FD E +WVW YS E ++ M++ E IRFRV ++NFT + G + A + EV G + Q + R RS ++ D S P P + +LGT +EDGLG+ +WW Sbjct: 1 MFALTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEVSAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|695371393|ref|XP_009514552.1| (hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae] >gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]) HSP 1 Score: 207.994 bits (528), Expect = 7.455e-64 Identity = 108/246 (43.90%), Postives = 149/246 (60.57%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I V P F+ + +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C+E I++S+ F DI +PSY LQTPS FD E +WVW YS E ++ M++ E IRFRV ++NFT + G + A + EV G + Q + R RS ++ D S P P + +LGT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEVSAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|635365262|emb|CCI46337.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 206.453 bits (524), Expect = 2.259e-63 Identity = 102/245 (41.63%), Postives = 147/245 (60.00%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I + P F+ + +VL EE+DRKY N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++ C+EN I+I++ F DI +PSY LQTPS FD E +WVW+++ + A ++ M+++E IRFRV +VNFT + G K ++ G L RR S + D S P P MQ+LGT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIAIHPMLFDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT-----DSAEKFHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTSE------------STEKKDKASLKRGNLDDKRRRLS---SVDLSDSDPTPSAMQILGTIDEDGLGLTSWW 225
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|301090703|ref|XP_002895556.1| (DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4] >gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4]) HSP 1 Score: 206.068 bits (523), Expect = 3.983e-63 Identity = 106/246 (43.09%), Postives = 148/246 (60.16%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I V P F+ + +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C+E I++S+ F DI +PSY LQTPS FD E +WVW YS E ++ M++ E IRFRV ++NFT + G + A + E+ G + Q + R RS ++ D S P P + +L T +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEISAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILATIDEDGLGLSSWW 226
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|953488381|emb|CEG47865.1| (dna-directed rna polymerase [Plasmopara halstedii]) HSP 1 Score: 205.682 bits (522), Expect = 5.521e-63 Identity = 107/247 (43.32%), Postives = 147/247 (59.51%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRR--PRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I V P F+ + +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C+E I++S+ F DI +PSY LQTPS FD E +WVW YS + ++ M++ E IRFRV ++NFT + G + K E E G G +RR R + + D S P P + +LGT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVEPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAHVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSDGQE-----KFFMDLHEEIRFRVTNINFTRVTKTAKG---------------IQATTTEATDKSEKEIGA-GDMRRSLARQRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 226
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|1214703732|gb|OWZ15698.1| (DNA-directed RNA polymerase III subunit RPC8 [Phytophthora megakarya]) HSP 1 Score: 202.986 bits (515), Expect = 5.191e-62 Identity = 105/246 (42.68%), Postives = 148/246 (60.16%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF L I D I V P F+ + +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FR++VFRPF+GEVL GR+ C+E I++S+ F DI +PSY LQTPS FD E +WVW YS E ++ M++ E IRFRV ++NFT + G T + ++ G + Q + R RS ++ D S P P + +LGT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDGDYTQVLIEEIDRKYANKVLTDVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTTERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQAT-------------TTEATEKAEKDINAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|325182910|emb|CCA17366.1| (DNAdirected RNA polymerase III subunit RPC8 putative [Albugo laibachii Nc14]) HSP 1 Score: 201.445 bits (511), Expect = 2.597e-61 Identity = 101/245 (41.22%), Postives = 149/245 (60.82%), Query Frame = 0 Query: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 MF LA I D I + P F+ + VL EE+D+K+ N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++ C+EN I+I++ F DI +PSY LQTPS FD E +WVW+++ E GE ++ M+++E +RFRV +VNFT + G + K ++GG + +R S D S P P MQ+LGT +EDGLG+ +WW Sbjct: 1 MFVLARISDVIAIHPMLFDGDYTRVLKEEIDKKFCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT--ESGE---KFHMDLNEEVRFRVTNVNFTQVHKTAKGMQATT------------IESTDKDGKSTLKGGNIDDRKRRLSSV---DLSDNDPTPSAMQILGTIDEDGLGLTSWW 225
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|635365261|emb|CCI46336.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 194.897 bits (494), Expect = 5.279e-59 Identity = 95/228 (41.67%), Postives = 139/228 (60.96%), Query Frame = 0 Query: 18 FNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244 F+ + +VL EE+DRKY N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++ C+EN I+I++ F DI +PSY LQTPS FD E +WVW+++ + A ++ M+++E IRFRV +VNFT + G K ++ G L RR S + D S P P MQ+LGT +EDGLG+ +WW Sbjct: 3 FDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT-----DSAEKFHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTSE------------STEKKDKASLKRGNLDDKRRRLS---SVDLSDSDPTPSAMQILGTIDEDGLGLTSWW 210 The following BLAST results are available for this feature:
BLAST of EWM29856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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