EWM29856.1, cds814 (CDS) Nannochloropsis gaditana

Overview
NameEWM29856.1
Unique Namecds814
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:484366..484437 +
Alignment locationCM002456.1:484543..485208 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29856.1
Productdna-directed rna polymerase iii subunit rpc8
Orig transcript idgnl|cribi|Naga_100017g5.354.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:484366..484437 +
CM002456.1supercontigCM002456.1:484543..485208 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR004519RNAP_E/RPC8
IPR012340NA-bd_OB-fold
IPR013238RNA_pol_III_Rbc25
IPR005576RNA_pol_Rpb7_N
Homology
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|585112437|gb|EWM29856.1| (dna-directed rna polymerase iii subunit rpc8 [Nannochloropsis gaditana])

HSP 1 Score: 499.204 bits (1284), Expect = 1.266e-178
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245
            MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG
Sbjct:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|553189160|ref|XP_005854944.1| (DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526] >gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 447.588 bits (1150), Expect = 1.418e-158
Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0
Query:   26 LTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245
            +TEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG
Sbjct:    1 MTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 220          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|675188353|ref|XP_008903061.1| (DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >gi|566028080|gb|ETI50991.1| DNA-directed RNA polymerase [Phytophthora parasitica P1569] >gi|567965407|gb|ETK90878.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|567994122|gb|ETL44286.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568023392|gb|ETL97451.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568053794|gb|ETM50610.1| DNA-directed RNA polymerase [Phytophthora parasitica] >gi|568096496|gb|ETN11243.1| DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >gi|570331784|gb|ETO79732.1| DNA-directed RNA polymerase [Phytophthora parasitica P1976] >gi|570955629|gb|ETP20756.1| DNA-directed RNA polymerase [Phytophthora parasitica CJ01A1] >gi|570990819|gb|ETP48700.1| DNA-directed RNA polymerase [Phytophthora parasitica P10297])

HSP 1 Score: 208.764 bits (530), Expect = 3.595e-64
Identity = 108/246 (43.90%), Postives = 149/246 (60.57%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I V P  F+ +  +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+  C+E  I++S+ F  DI +PSY LQTPS FD  E +WVW YS     E   ++ M++ E IRFRV ++NFT    +  G         + A             + EV  G + Q + R RS ++  D S   P P  + +LGT +EDGLG+ +WW
Sbjct:    1 MFALTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEVSAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|695371393|ref|XP_009514552.1| (hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae] >gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae])

HSP 1 Score: 207.994 bits (528), Expect = 7.455e-64
Identity = 108/246 (43.90%), Postives = 149/246 (60.57%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I V P  F+ +  +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+  C+E  I++S+ F  DI +PSY LQTPS FD  E +WVW YS     E   ++ M++ E IRFRV ++NFT    +  G         + A             + EV  G + Q + R RS ++  D S   P P  + +LGT +EDGLG+ +WW
Sbjct:    1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEVSAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|635365262|emb|CCI46337.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 206.453 bits (524), Expect = 2.259e-63
Identity = 102/245 (41.63%), Postives = 147/245 (60.00%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I + P  F+ +  +VL EE+DRKY N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++  C+EN I+I++ F  DI +PSY LQTPS FD  E +WVW+++     + A ++ M+++E IRFRV +VNFT    +  G                         K  ++ G L   RR  S   + D S   P P  MQ+LGT +EDGLG+ +WW
Sbjct:    1 MFVLTRISDVIAIHPMLFDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT-----DSAEKFHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTSE------------STEKKDKASLKRGNLDDKRRRLS---SVDLSDSDPTPSAMQILGTIDEDGLGLTSWW 225          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|301090703|ref|XP_002895556.1| (DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4] >gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4])

HSP 1 Score: 206.068 bits (523), Expect = 3.983e-63
Identity = 106/246 (43.09%), Postives = 148/246 (60.16%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I V P  F+ +  +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+  C+E  I++S+ F  DI +PSY LQTPS FD  E +WVW YS     E   ++ M++ E IRFRV ++NFT    +  G         + A             + E+  G + Q + R RS ++  D S   P P  + +L T +EDGLG+ +WW
Sbjct:    1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDKA-------------EKEISAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILATIDEDGLGLSSWW 226          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|953488381|emb|CEG47865.1| (dna-directed rna polymerase [Plasmopara halstedii])

HSP 1 Score: 205.682 bits (522), Expect = 5.521e-63
Identity = 107/247 (43.32%), Postives = 147/247 (59.51%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRR--PRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I V P  F+ +  +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+  C+E  I++S+ F  DI +PSY LQTPS FD  E +WVW YS  +      ++ M++ E IRFRV ++NFT    +  G               +         K E E G  G +RR   R  + + D S   P P  + +LGT +EDGLG+ +WW
Sbjct:    1 MFVLTRISDVIPVEPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAHVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSDGQE-----KFFMDLHEEIRFRVTNINFTRVTKTAKG---------------IQATTTEATDKSEKEIGA-GDMRRSLARQRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 226          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|1214703732|gb|OWZ15698.1| (DNA-directed RNA polymerase III subunit RPC8 [Phytophthora megakarya])

HSP 1 Score: 202.986 bits (515), Expect = 5.191e-62
Identity = 105/246 (42.68%), Postives = 148/246 (60.16%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQ-VRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF L  I D I V P  F+ +  +VL EE+DRKYAN+++ +VGL + LYDFV IGDA+++PSDG +H +V FR++VFRPF+GEVL GR+  C+E  I++S+ F  DI +PSY LQTPS FD  E +WVW YS     E   ++ M++ E IRFRV ++NFT    +  G                 T       + ++  G + Q + R RS ++  D S   P P  + +LGT +EDGLG+ +WW
Sbjct:    1 MFVLTRISDVIPVAPELFDGDYTQVLIEEIDRKYANKVLTDVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTTERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQAT-------------TTEATEKAEKDINAGDMRQSLARRRSSSV--DLSDNDPTPSAIHILGTIDEDGLGLSSWW 226          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|325182910|emb|CCA17366.1| (DNAdirected RNA polymerase III subunit RPC8 putative [Albugo laibachii Nc14])

HSP 1 Score: 201.445 bits (511), Expect = 2.597e-61
Identity = 101/245 (41.22%), Postives = 149/245 (60.82%), Query Frame = 0
Query:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            MF LA I D I + P  F+ +   VL EE+D+K+ N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++  C+EN I+I++ F  DI +PSY LQTPS FD  E +WVW+++  E GE   ++ M+++E +RFRV +VNFT    +  G                       + K  ++GG +   +R  S     D S   P P  MQ+LGT +EDGLG+ +WW
Sbjct:    1 MFVLARISDVIAIHPMLFDGDYTRVLKEEIDKKFCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT--ESGE---KFHMDLNEEVRFRVTNVNFTQVHKTAKGMQATT------------IESTDKDGKSTLKGGNIDDRKRRLSSV---DLSDNDPTPSAMQILGTIDEDGLGLTSWW 225          
BLAST of EWM29856.1 vs. NCBI_GenBank
Match: gi|635365261|emb|CCI46336.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 194.897 bits (494), Expect = 5.279e-59
Identity = 95/228 (41.67%), Postives = 139/228 (60.96%), Query Frame = 0
Query:   18 FNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLP-PMQLLGTTNEDGLGMLAWW 244
            F+ +  +VL EE+DRKY N+++ +VGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++  C+EN I+I++ F  DI +PSY LQTPS FD  E +WVW+++     + A ++ M+++E IRFRV +VNFT    +  G                         K  ++ G L   RR  S   + D S   P P  MQ+LGT +EDGLG+ +WW
Sbjct:    3 FDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT-----DSAEKFHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTSE------------STEKKDKASLKRGNLDDKRRRLS---SVDLSDSDPTPSAMQILGTIDEDGLGLTSWW 210          
The following BLAST results are available for this feature:
BLAST of EWM29856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112437|gb|EWM29856.1|1.266e-178100.00dna-directed rna polymerase iii subunit rpc8 [Nann... [more]
gi|553189160|ref|XP_005854944.1|1.418e-15899.55DNA-directed RNA polymerase III subunit RPC8 [Nann... [more]
gi|675188353|ref|XP_008903061.1|3.595e-6443.90DNA-directed RNA polymerase [Phytophthora parasiti... [more]
gi|695371393|ref|XP_009514552.1|7.455e-6443.90hypothetical protein PHYSODRAFT_538886 [Phytophtho... [more]
gi|635365262|emb|CCI46337.1|2.259e-6341.63unnamed protein product [Albugo candida][more]
gi|301090703|ref|XP_002895556.1|3.983e-6343.09DNA-directed RNA polymerase III subunit RPC8, puta... [more]
gi|953488381|emb|CEG47865.1|5.521e-6343.32dna-directed rna polymerase [Plasmopara halstedii][more]
gi|1214703732|gb|OWZ15698.1|5.191e-6242.68DNA-directed RNA polymerase III subunit RPC8 [Phyt... [more]
gi|325182910|emb|CCA17366.1|2.597e-6141.22DNAdirected RNA polymerase III subunit RPC8 putati... [more]
gi|635365261|emb|CCI46336.1|5.279e-5941.67unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna814rna814Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications