rna8136, rna8136 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8136
Unique Name	rna8136
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1723
Alignment location	KK037247.1:649429..651632 +

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Properties


Property Name	Value
Product	Lipase, class 3
Orig transcript id	gnl\|cribi\|Naga_100529g6.9580.mrna
Orig protein id	gnl\|cribi\|Naga_100529g6.9580
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:649429..651632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100529g6	gene7878	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8136	rna8136-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22562.1	cds8112	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:649429..651632+
coding sequence from alignment at KK037247.1:649429..651632+

mRNA sequence

>rna8136 ID=rna8136|Name=rna8136|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp
TCAGTTTCTTAATGCACGGAAACCATTTTCCTGCCAAATGTTCGGCTTTA
GGTGTGCACAGGCTGGCGCCATAGTCTACATCTGTCATCTCCAGGCGCTC
GCTCAAGCCCGAGAAAGCTACGGCTTCACGTAGGAAACTATCGGTACACG
GTGCACTTTTTACGCCGTAAATGCGCAAATGACATTGATTCGATGCGTGC
ATGAAGTCGACAAGCATTCCTACCGATTTCCTTGTGGTCCTGAGGAAAGA
CAGGGACAGGTGAAATGGCGCCGGCAGGAAGATCCTTCCACGTGCGCTTG
TCGATCCACGCACTAGCCTTTCTCCTACTTTCCGCCCGCGGCGTTTTTGC
CTTCCTTCCGTCCTATCCGAGACCTCCTCTGGTACCGTCACCGTGTCGTA
CCCTTTTAGACCCCGGCCGCCGCAGCTTTTCGATACGCATGTCCGCGGCG
GTAGACAAATCACCGACCCGTCCTGAGCGTGTTTGGTCCACGCTCTTCGA
TCCGGAAAAGGCGGCTCGTTTGGGCGCTTTCTCATTTAGTGTGTATGGTG
ACCCCAACACCGCCCGGTACTATCGGGCCCATGACGGCACGGACATTGGC
TTCCCTTCTGACGACGTCGTTCACCGCAATTTCCAGCACATGCTCTCCGT
CCGCATCCAACGGGCCAGGGACCTGCCCACGGCCACCAATTTGGTGGAGA
AAGTGCTCCAGCGCTCCTTAGACCCTCAGCCAGTCGTCACCGTGGAAGTC
CTGTCCACCCACGGCTCCGACGTCGCTGTCACGCCTATCGCCGAGTCGAC
TCCCGGCCCCGCCGCCTCCGAGACGCCGGTCTATCTGTACGTGGAAGATG
TGGCCAACGCCTGCTTTCGCGTGGCCGTGCACGACCTTAAGAGTCTGGGG
GAGGACGCGCTCCTGGGCCAGGCAGAGATGCCCTTGGCTGAATTGTGCAA
GGACGGGGCATGGGAGGGATGGATCGATGTGATGGATTCTGAAGGAGCGT
CGCAAGGAAGCGTGGAGGTGGCGCTTCGACTGCTGCCGTTGGAGGGAGAG
GGGGCCAGCGACAAGGAGAAAGTGGCAGGGGGGGCGGGAAGGGAGAAGCA
GGAGGAAGGGAAAGAGGGAGGGAAGGGAAAAGAGCCGACGAAGGCTGTGG
TGGAGCTGGATTGGGACGTGCTGGCGTCTAAAATCCGAGGTGGGGAAGTA
GGGGGTATGGGGGCATACGCCCTGGCCGCCTTCTTGAGCAACCCGGAGAC
GGACACACAGGGGGCCATTTGGGAGAACCAGAAGGACAAGGAGCTCGTCA
TTTGTTTCCGAGGGACGGAGATCGGTTGGAAGGACCTGTTGACGGACGCC
ATGATCCTGCAGCAGCCCTTGGATGATACCCGGAGGGAGGACCCGCGCCG
CGTCCACGCGGGCTTTTTGCGGGCGTTTCGGGCGGTGAAAAATGCGGTGT
ACACGGCCTTGCATTTTGTTCGGCACGGGGACTTGGACGGGTGGAAAATC
GACGTCTGCGGGCATTCCCTGGGGGGGGCCTTGGCCACCTTGCTGGCCCA
TGATTTGGCGGAACGATACCCGGAGATGGCGGCGTCAGGGAGGTTGCAGA
TGTATTGCTACGGAAGCCCTCGGGTGGGAAACGCTGCGTTCTGCCAGGAC
TACGACGACAAGCTCGGAGATGCTTCCTTCCGCGTGGTGAACAACCAGGG
TCAGGCGGGGAGGGCGGGAGAGA

protein sequence of rna8136

>rna8136-protein ID=rna8136-protein|Name=rna8136|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MAPAGRSFHVRLSIHALAFLLLSARGVFAFLPSYPRPPLVPSPCRTLLDP
GRRSFSIRMSAAVDKSPTRPERVWSTLFDPEKAARLGAFSFSVYGDPNTA
RYYRAHDGTDIGFPSDDVVHRNFQHMLSVRIQRARDLPTATNLVEKVLQR
SLDPQPVVTVEVLSTHGSDVAVTPIAESTPGPAASETPVYLYVEDVANAC
FRVAVHDLKSLGEDALLGQAEMPLAELCKDGAWEGWIDVMDSEGASQGSV
EVALRLLPLEGEGASDKEKVAGGAGREKQEEGKEGGKGKEPTKAVVELDW
DVLASKIRGGEVGGMGAYALAAFLSNPETDTQGAIWENQKDKELVICFRG
TEIGWKDLLTDAMILQQPLDDTRREDPRRVHAGFLRAFRAVKNAVYTALH
FVRHGDLDGWKIDVCGHSLGGALATLLAHDLAERYPEMAASGRLQMYCYG
EWGGEEGRSCFFWPF

mRNA from alignment at KK037247.1:649429..651632+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8136 ID=rna8136|Name=rna8136|organism=Nannochloropsis gaditana|type=mRNA|length=2204bp|location=Sequence derived from alignment at KK037247.1:649429..651632+ (Nannochloropsis gaditana)
TCAGTTTCTTAATGCACGGAAACCATTTTCCTGCCAAATGTTCGGCTTTA
GGTGTGCACAGGCTGGCGCCATAGTCTACATCTGTCATCTCCAGGCGCTC
GCTCAAGCCCGAGAAAGCTACGGCTTCACGTAGGAAACTATCGGTACACG
GTGCACTTTTTACGCCGTAAATGCGCAAATGACATTGATTCGATGCGTGC
ATGAAGTCGACAAGCATTCCTACCGATTTCCTTGTGGTCCTGAGGTAATT
CATGCGACCATGGATTTGTTCTGATTCAACGCAGTTGCTGCAAACTTCAA
CGTCTCGTTTCCATCGTCCCGCACACGACACAGGAAAGACAGGGACAGGT
GAAATGGCGCCGGCAGGAAGATCCTTCCACGTGCGCTTGTCGATCCACGC
ACTAGCCTTTCTCCTACTTTCCGCCCGCGGCGtttttgccttccttccgt
cCTATCCGAGACCTCCTCTGGTACCGTCACCGTGTCGTACCCTTTTAGAC
CCCGGCCGCCGCAGCTTTTCGATACGCATGTCCGCGGCGGTAGACAAATC
ACCGACCCGTCCTGAGCGTGTTTGGTCCACGCTCTTCGATCCGGAAAAGG
CGGCTCGTTTGGGCGCTTTCTCGTACGTGCTATGGATCAGggctttctct
ctcctttttttATGCCGCACCATGAGCCATTCAGACAGTCTCcaccccac
ccccaccctaACCCTCGTTACAGATTTAGTGTGTATGGTGACCCCAACAC
CGCCCGGTACTATCGGGCCCATGACGGCACGGACATTGGCTTCCCTTCTG
ACGACGTCGTTCACCGCAATTTCCAGCACATGCTCTCCGTCCGCATCCAA
CGGGCCAGGGACCTGCCCACGGCCACCAATTTGGTGGAGAAAGTGCTCCA
GCGCTCCTTAGACCCTCAGCCAGTCGTCACCGTGGAAGTACGTACTCCAT
GAAGACGACAAGAAGTTTCGCCCCAGGCATTTCCGGTTCATAATGTTATG
ATGCCTCCAAACCCACCCTTTATGAAAGATCCCCCTGaaccaacctcccc
ccccctcgtgcgtccttccctccccttctcctacCCCTCCTAGGTCCTGT
CCACCCACGGCTCCGACGTCGCTGTCACGCCTATCGCCGAGTCGACTCCc
ggccccgccgcctccgagACGCCGGTCTATCTGTACGTGGAAGATGTGGC
CAACGCCTGCTTTCGCGTGGCCGTGCACGACCTTAAGAGtctgggggagg
acgcgctcCTGGGCCAGGCAGAGATGCCCTTGGCTGAATTGTGCAAGGAc
ggggcatgggagggatggatcgATGTGATGGATTCTGAAGGAGCGTCGCA
AGGAagcgtggaggtggcgctTCGACTGCTGCcgttggagggagaggggg
ccagcgacaaggagaaagtggcagggggggcgggaagggagaagcaggag
gaagggaaagagggagggaagggaaaagagccgACGAAGGCTGTGGTGGA
GCTGGATTGGGACGTGCTGGCGTCTAAAATCCGAGGTGGGGAAGTAGGGG
GTATGGGGGCAtacgccctggccgccttctTGAGCAACCCGGAGACGGAC
ACACAGGGGGCCATTTGGGAGAAccagaaggacaaggagctcGTCATTTG
TTTCCGAGGGACGGAGATCGGTTGGAAGGACCTGTTGACGGACGCCATGA
TCCTGCAGCAGCCCTTGGATGAtacccggagggaggacccgCGCCGCGTC
CACGCGGGCTTTTTGCGGGCGTTTCGGGCGGTGAAAAATGCGGTGTACAC
GGCCTTGCATTTTGTTCGGCACGGGGACTTGGACGGGTGGAAAATCGACG
TCTGCGGGCATTCCCTGGGGGGGGCCTTGGCCACCTTGCTGGCCCATGAT
TTGGCGGAACGATACCCGGAGATGGCGGCGTCAGGGAGGTTGCAGATGTA
TTGCTACGGtgagtggggaggggaggagggaaggtcatGCTTTTTTTGGC
CTTTTTGAATGGATATATCTGGGTACAGACTGCTCGTTGGCGGCGGGGTC
TCCTCGTGAGCTGCCgaggcgcttcctcccacctccgACGGCCTACAATA
TCAAGAAGTTTCGTATCATACCTCCCTGGCATAACTCCCGCGCGGCGCGT
GGTCATGAATGCATGCATGGtagcccttgtcctccttctcaccttccctc
cccc

Coding sequence (CDS) from alignment at KK037247.1:649429..651632+

>rna8136 ID=rna8136|Name=rna8136|organism=Nannochloropsis gaditana|type=CDS|length=4194bp|location=Sequence derived from alignment at KK037247.1:649429..651632+ (Nannochloropsis gaditana)
ATGGCGCCGGCAGGAAGATCCTTCCACGTGCGCTTGTCGATCCACGCACT
AGCCTTTCTCCTACTTTCCGCCCGCGGCGtttttgccttccttccgtcCT
ATCCGAGACCTCCTCTGGTACCGTCACCGTGTCGTACCCTTTTAGACCCC
GGCCGCCGCAGCTTTTCGATACGCATGTCCGCGGCGGTAGACAAATCACC
GACCCGTCCTGAGCGTGTTTGGTCCACGCTCTTCGATCCGGAAAAGGCGG
CTCGTTTGGGCGCTTTCTCATTTAGTGTGTATGGTGACCCCAACACCGCC
CGGTACTATCGGGCCCATGACGGCACGGACATTGGCTTCCCTTCTGACGA
CGTCGTTCACCGCAATTTCCAGCACATGCTCTCCGTCCGCATCCAACGGG
CCAGGGACCTGCCCACGGCCACCAATTTGGTGGAGAAAGTGCTCCAGCGC
TCCTTAGACCCTCAGCCAGTCGTCACCGTGGAAGTCCTGTCCACCCACGG
CTCCGACGTCGCTGTCACGCCTATCGCCGAGTCGACTCCcggccccgccg
cctccgagACGCCGGTCTATCTGTACGTGGAAGATGTGGCCAACGCCTGC
TTTCGCGTGGCCGTGCACGACCTTAAGAGtctgggggaggacgcgctcCT
GGGCCAGGCAGAGATGCCCTTGGCTGAATTGTGCAAGGAcggggcatggg
agggatggatcgATGTGATGGATTCTGAAGGAGCGTCGCAAGGAagcgtg
gaggtggcgctTCGACTGCTGCcgttggagggagagggggccagcgacaa
ggagaaagtggcagggggggcgggaagggagaagcaggaggaagggaaag
agggagggaagggaaaagagccgACGAAGGCTGTGGTGGAGCTGGATTGG
GACGTGCTGGCGTCTAAAATCCGAGGTGGGGAAGTAGGGGGTATGGGGGC
AtacgccctggccgccttctTGAGCAACCCGGAGACGGACACACAGGGGG
CCATTTGGGAGAAccagaaggacaaggagctcGTCATTTGTTTCCGAGGG
ACGGAGATCGGTTGGAAGGACCTGTTGACGGACGCCATGATCCTGCAGCA
GCCCTTGGATGAtacccggagggaggacccgCGCCGCGTCCACGCGGGCT
TTTTGCGGGCGTTTCGGGCGGTGAAAAATGCGGTGTACACGGCCTTGCAT
TTTGTTCGGCACGGGGACTTGGACGGGTGGAAAATCGACGTCTGCGGGCA
TTCCCTGGGGGGGGCCTTGGCCACCTTGCTGGCCCATGATTTGGCGGAAC
GATACCCGGAGATGGCGGCGTCAGGGAGGTTGCAGATGTATTGCTACGGt
gagtggggaggggaggagggaaggtcatGCTTTTTTTGGCCTTTTTGAAT
GGCGCCGGCAGGAAGATCCTTCCACGTGCGCTTGTCGATCCACGCACTAG
CCTTTCTCCTACTTTCCGCCCGCGGCGtttttgccttccttccgtcCTAT
CCGAGACCTCCTCTGGTACCGTCACCGTGTCGTACCCTTTTAGACCCCGG
CCGCCGCAGCTTTTCGATACGCATGTCCGCGGCGGTAGACAAATCACCGA
CCCGTCCTGAGCGTGTTTGGTCCACGCTCTTCGATCCGGAAAAGGCGGCT
CGTTTGGGCGCTTTCTCATTTAGTGTGTATGGTGACCCCAACACCGCCCG
GTACTATCGGGCCCATGACGGCACGGACATTGGCTTCCCTTCTGACGACG
TCGTTCACCGCAATTTCCAGCACATGCTCTCCGTCCGCATCCAACGGGCC
AGGGACCTGCCCACGGCCACCAATTTGGTGGAGAAAGTGCTCCAGCGCTC
CTTAGACCCTCAGCCAGTCGTCACCGTGGAAGTCCTGTCCACCCACGGCT
CCGACGTCGCTGTCACGCCTATCGCCGAGTCGACTCCcggccccgccgcc
tccgagACGCCGGTCTATCTGTACGTGGAAGATGTGGCCAACGCCTGCTT
TCGCGTGGCCGTGCACGACCTTAAGAGtctgggggaggacgcgctcCTGG
GCCAGGCAGAGATGCCCTTGGCTGAATTGTGCAAGGAcggggcatgggag
ggatggatcgATGTGATGGATTCTGAAGGAGCGTCGCAAGGAagcgtgga
ggtggcgctTCGACTGCTGCcgttggagggagagggggccagcgacaagg
agaaagtggcagggggggcgggaagggagaagcaggaggaagggaaagag
ggagggaagggaaaagagccgACGAAGGCTGTGGTGGAGCTGGATTGGGA
CGTGCTGGCGTCTAAAATCCGAGGTGGGGAAGTAGGGGGTATGGGGGCAt
acgccctggccgccttctTGAGCAACCCGGAGACGGACACACAGGGGGCC
ATTTGGGAGAAccagaaggacaaggagctcGTCATTTGTTTCCGAGGGAC
GGAGATCGGTTGGAAGGACCTGTTGACGGACGCCATGATCCTGCAGCAGC
CCTTGGATGAtacccggagggaggacccgCGCCGCGTCCACGCGGGCTTT
TTGCGGGCGTTTCGGGCGGTGAAAAATGCGGTGTACACGGCCTTGCATTT
TGTTCGGCACGGGGACTTGGACGGGTGGAAAATCGACGTCTGCGGGCATT
CCCTGGGGGGGGCCTTGGCCACCTTGCTGGCCCATGATTTGGCGGAACGA
TACCCGGAGATGGCGGCGTCAGGGAGGTTGCAGATGTATTGCTACGGtga
gtggggaggggaggagggaaggtcatGCTTTTTTTGGCCTTTTTGAATGG
CGCCGGCAGGAAGATCCTTCCACGTGCGCTTGTCGATCCACGCACTAGCC
TTTCTCCTACTTTCCGCCCGCGGCGtttttgccttccttccgtcCTATCC
GAGACCTCCTCTGGTACCGTCACCGTGTCGTACCCTTTTAGACCCCGGCC
GCCGCAGCTTTTCGATACGCATGTCCGCGGCGGTAGACAAATCACCGACC
CGTCCTGAGCGTGTTTGGTCCACGCTCTTCGATCCGGAAAAGGCGGCTCG
TTTGGGCGCTTTCTCATTTAGTGTGTATGGTGACCCCAACACCGCCCGGT
ACTATCGGGCCCATGACGGCACGGACATTGGCTTCCCTTCTGACGACGTC
GTTCACCGCAATTTCCAGCACATGCTCTCCGTCCGCATCCAACGGGCCAG
GGACCTGCCCACGGCCACCAATTTGGTGGAGAAAGTGCTCCAGCGCTCCT
TAGACCCTCAGCCAGTCGTCACCGTGGAAGTCCTGTCCACCCACGGCTCC
GACGTCGCTGTCACGCCTATCGCCGAGTCGACTCCcggccccgccgcctc
cgagACGCCGGTCTATCTGTACGTGGAAGATGTGGCCAACGCCTGCTTTC
GCGTGGCCGTGCACGACCTTAAGAGtctgggggaggacgcgctcCTGGGC
CAGGCAGAGATGCCCTTGGCTGAATTGTGCAAGGAcggggcatgggaggg
atggatcgATGTGATGGATTCTGAAGGAGCGTCGCAAGGAagcgtggagg
tggcgctTCGACTGCTGCcgttggagggagagggggccagcgacaaggag
aaagtggcagggggggcgggaagggagaagcaggaggaagggaaagaggg
agggaagggaaaagagccgACGAAGGCTGTGGTGGAGCTGGATTGGGACG
TGCTGGCGTCTAAAATCCGAGGTGGGGAAGTAGGGGGTATGGGGGCAtac
gccctggccgccttctTGAGCAACCCGGAGACGGACACACAGGGGGCCAT
TTGGGAGAAccagaaggacaaggagctcGTCATTTGTTTCCGAGGGACGG
AGATCGGTTGGAAGGACCTGTTGACGGACGCCATGATCCTGCAGCAGCCC
TTGGATGAtacccggagggaggacccgCGCCGCGTCCACGCGGGCTTTTT
GCGGGCGTTTCGGGCGGTGAAAAATGCGGTGTACACGGCCTTGCATTTTG
TTCGGCACGGGGACTTGGACGGGTGGAAAATCGACGTCTGCGGGCATTCC
CTGGGGGGGGCCTTGGCCACCTTGCTGGCCCATGATTTGGCGGAACGATA
CCCGGAGATGGCGGCGTCAGGGAGGTTGCAGATGTATTGCTACGGtgagt
ggggaggggaggagggaaggtcatGCTTTTTTTGGCCTTTTTGA

Synonyms

Publications